BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At3g11140.f
(402 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM26710.1| AT4g02720/T10P11_1 [Arabidopsis thaliana]|gi... 40 0.009
pir||T01077 hypothetical protein T10P11.1 - Arabidopsis tha... 40 0.009
pir||H70168 hypothetical protein BB0553 - Lyme disease spir... 38 0.033
gb|AAH45992.1| Similar to RIKEN cDNA 2610015J01 gene [Danio... 35 0.16
gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein,... 35 0.21
>gb|AAM26710.1| AT4g02720/T10P11_1 [Arabidopsis
thaliana]|gi|18700163|gb|AAL77693.1| AT4g02720/T10P11_1
[Arabidopsis thaliana]|gi|22328253|ref|NP_192181.2|
unknown protein; protein id: At4g02720.1, supported by
cDNA: gi_18700162, supported by cDNA: gi_20857301
[Arabidopsis thaliana]
Length = 422
Score = 39.7 bits (91), Expect = 0.009
Identities = 27/102 (26%), Positives = 49/102 (47%), Gaps = 6/102 (5%)
Frame = +1
Query: 34 RSRRENPGPESDPRKGRDRQRPSDARETKEDLKSQPDLRQVKEKVRNDEIAIQSESL--- 204
+ R+++ S KG + SD+ T+ED K Q D E V+N E+ + E L
Sbjct: 211 KRRKKSSDSSSKRSKGEKTKSGSDSDGTEEDSKMQVD-----ETVKNTELELDEEELKKF 265
Query: 205 ---VEYKERNQRRDDVLQVPELYDVLLPKLRVRIVFGSSFKP 321
+E K+++ D+ + ++ + LPK I +G + +P
Sbjct: 266 KEMIELKKKSSAVDEEEEEGDVGPMPLPKAEGHISYGGALRP 307
>pir||T01077 hypothetical protein T10P11.1 - Arabidopsis
thaliana|gi|7269757|emb|CAB77757.1| predicted protein of
unknown function [Arabidopsis
thaliana]|gi|4263520|gb|AAD15346.1| predicted protein of
unknown function [Arabidopsis
thaliana]|gi|2262136|gb|AAC78251.1|AAC78251 predicted
protein of unknown function [Arabidopsis thaliana]
Length = 420
Score = 39.7 bits (91), Expect = 0.009
Identities = 27/102 (26%), Positives = 49/102 (47%), Gaps = 6/102 (5%)
Frame = +1
Query: 34 RSRRENPGPESDPRKGRDRQRPSDARETKEDLKSQPDLRQVKEKVRNDEIAIQSESL--- 204
+ R+++ S KG + SD+ T+ED K Q D E V+N E+ + E L
Sbjct: 209 KRRKKSSDSSSKRSKGEKTKSGSDSDGTEEDSKMQVD-----ETVKNTELELDEEELKKF 263
Query: 205 ---VEYKERNQRRDDVLQVPELYDVLLPKLRVRIVFGSSFKP 321
+E K+++ D+ + ++ + LPK I +G + +P
Sbjct: 264 KEMIELKKKSSAVDEEEEEGDVGPMPLPKAEGHISYGGALRP 305
>pir||H70168 hypothetical protein BB0553 - Lyme disease
spirochete|gi|2688482|gb|AAC66928.1| B. burgdorferi
predicted coding region BB0553 [Borrelia
burgdorferi]|gi|15594898|ref|NP_212687.1| B. burgdorferi
predicted coding region BB0553 [Borrelia burgdorferi]
Length = 497
Score = 37.7 bits (86), Expect = 0.033
Identities = 23/84 (27%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Frame = +1
Query: 67 DPRKGRDRQRPSDARETKEDLK--SQPDLRQVKE----KVRNDEIAIQSESLVEYKERNQ 228
DP+KG+D + P + R+ K K + DL+ V E K++N E +++++ + N+
Sbjct: 69 DPKKGKDLKLPENIRDKKLPQKRMDENDLKSVIENYENKIKNIEKLLKTKNQKTSENENK 128
Query: 229 RRDDVLQVPELYDVLLPKLRVRIV 300
+ + + + + Y++L KL+ IV
Sbjct: 129 KIESIEKKAKKYEILTNKLKNEIV 152
>gb|AAH45992.1| Similar to RIKEN cDNA 2610015J01 gene [Danio rerio]
Length = 731
Score = 35.4 bits (80), Expect = 0.16
Identities = 23/70 (32%), Positives = 36/70 (50%), Gaps = 2/70 (2%)
Frame = +1
Query: 34 RSRRENPGPESDPRKGRDRQRPSD-ARETKEDLKSQPDLRQVKEKVRNDEIAIQSE-SLV 207
RSR + G + RDR+R D R+ +ED + + R+++ K+R E A Q
Sbjct: 349 RSRDRSEGRSRSREQSRDRERDKDKKRDREEDEEEAYERRKLERKLREKEAAYQERLKNW 408
Query: 208 EYKERNQRRD 237
E +ER + RD
Sbjct: 409 ELRERKKARD 418
>gb|AAM13243.1| putative U5 small nuclear ribonucleoprotein, an RNA helicase
[Arabidopsis thaliana]|gi|1707017|gb|AAC69128.1|
putative U5 small nuclear ribonucleoprotein, an RNA
helicase [Arabidopsis
thaliana]|gi|17473908|gb|AAL38370.1| putative U5 small
nuclear ribonucleoprotein, an RNA helicase [Arabidopsis
thaliana]|gi|15226155|ref|NP_180929.1| U5 small nuclear
ribonucleoprotein, putative; protein id: At2g33730.1,
supported by cDNA: gi_17473907, supported by cDNA:
gi_20259791 [Arabidopsis
thaliana]|gi|25408302|pir||H84748 hypothetical protein
At2g33730 [imported] - Arabidopsis thaliana
Length = 733
Score = 35.0 bits (79), Expect = 0.21
Identities = 19/77 (24%), Positives = 38/77 (48%)
Frame = +1
Query: 34 RSRRENPGPESDPRKGRDRQRPSDARETKEDLKSQPDLRQVKEKVRNDEIAIQSESLVEY 213
R R + + D + RDR+R D + + +PD R+ +EK R +E+ + ++ VE
Sbjct: 92 RDRGRDRDRDRDRDRDRDRERERDRERDRRERDREPD-RRNREKEREEEVKAREKARVEK 150
Query: 214 KERNQRRDDVLQVPELY 264
++ ++ + E Y
Sbjct: 151 LVEREKEKELDAIKEQY 167
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 109
effective length of database: 284,607,740
effective search space used: 6830585760
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)