BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At2g31090.f
         (63 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||D84716  hypothetical protein At2g31090 [imported] - Ara...    50   1e-05
gb|AAM61072.1|  unknown [Arabidopsis thaliana]|gi|20197329|g...    48   5e-05

>pir||D84716 hypothetical protein At2g31090 [imported] - Arabidopsis thaliana
          Length = 20

 Score = 50.1 bits (118), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +1

Query: 1  MHMSMLLVCDCTSGDRNWFD 60
          MHMSMLLVCDCTSGDRNWFD
Sbjct: 1  MHMSMLLVCDCTSGDRNWFD 20



>gb|AAM61072.1| unknown [Arabidopsis thaliana]|gi|20197329|gb|AAC63841.2|
          expressed protein [Arabidopsis
          thaliana]|gi|18402553|ref|NP_565714.1| expressed
          protein; protein id: At2g31090.1, supported by cDNA:
          10986. [Arabidopsis thaliana]
          Length = 75

 Score = 47.8 bits (112), Expect = 5e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +2

Query: 2  CICPCCLCVTVLVEIAIGLI 61
          CICPCCLCVTVLVEIAIGLI
Sbjct: 40 CICPCCLCVTVLVEIAIGLI 59



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 0
effective length of database: 431,508,457
effective search space used: 10356202968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)