BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At2g25990.f
(60 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02624 hypothetical protein At2g25990 [imported] - Ara... 43 0.002
ref|NP_197088.1| Zinc finger protein CONSTANS; protein id: ... 39 0.023
>pir||T02624 hypothetical protein At2g25990 [imported] - Arabidopsis
thaliana|gi|3413713|gb|AAC31236.1| unknown protein
[Arabidopsis thaliana]|gi|15225234|ref|NP_180169.1|
unknown protein; protein id: At2g25990.1 [Arabidopsis
thaliana]
Length = 19
Score = 42.7 bits (99), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 1 MAGSQREKLKPRTKGSTRC 57
MAGSQREKLKPRTKGSTRC
Sbjct: 1 MAGSQREKLKPRTKGSTRC 19
>ref|NP_197088.1| Zinc finger protein CONSTANS; protein id: At5g15840.1, supported by
cDNA: 2588. [Arabidopsis
thaliana]|gi|21554622|gb|AAM63636.1| CONSTANS
[Arabidopsis thaliana]|gi|17433022|sp|Q39057|CONS_ARATH
Zinc finger protein CONSTANS|gi|1076301|pir||A56133
constans protein - Arabidopsis
thaliana|gi|9755629|emb|CAC01783.1| CONSTANS
[Arabidopsis thaliana]|gi|1161514|emb|CAA64407.1|
CONSTANS protein [Arabidopsis
thaliana]|gi|25054874|gb|AAN71925.1| putative CONSTANS
protein [Arabidopsis thaliana]
Length = 373
Score = 38.9 bits (89), Expect = 0.023
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3
Query: 3 GRFAKREIETEDQGFNTML 59
GRFAKREIE E+QGFNTML
Sbjct: 343 GRFAKREIEAEEQGFNTML 361
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 0
effective length of database: 431,508,457
effective search space used: 10356202968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)