BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g16800.f
(5820 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173124.1| hypothetical protein; protein id: At1g1680... 3698 0.0
gb|AAG09081.1|AC026237_2 Similar to tRNA-splicing endonucle... 2876 0.0
gb|AAB63976.1| SEN1 [Saccharomyces cerevisiae] 328 5e-88
gb|AAB67502.1| Sen1p [Saccharomyces cerevisiae]|gi|6323462|... 328 5e-88
gb|AAL31652.1|AC079179_7 Putative DNA2-NAM7 helicase family... 327 2e-87
>ref|NP_173124.1| hypothetical protein; protein id: At1g16800.1 [Arabidopsis thaliana]
Length = 1939
Score = 3698 bits (9589), Expect = 0.0
Identities = 1872/1939 (96%), Positives = 1872/1939 (96%)
Frame = +1
Query: 1 MLSKVSPSGELLNRWRRIXXXXXXXXXXXPSAVRRLNQRKEQWFTDAFTLLISLPKDTHI 180
MLSKVSPSGELLNRWRRI PSAVRRLNQRKEQWFTDAFTLLISLPKDTHI
Sbjct: 1 MLSKVSPSGELLNRWRRIEEDEEENDDSDPSAVRRLNQRKEQWFTDAFTLLISLPKDTHI 60
Query: 181 WCGHGDIMGPLIETFYNYFKDDRVDSPLKVLWKRISEEMRLCAQCICQHHQTQEMYEKEY 360
WCGHGDIMGPLIETFYNYFKDDRVDSPLKVLWKRISEEMRLCAQCICQHHQTQEMYEKEY
Sbjct: 61 WCGHGDIMGPLIETFYNYFKDDRVDSPLKVLWKRISEEMRLCAQCICQHHQTQEMYEKEY 120
Query: 361 ECSSVGPLLVVLRKLDEERVTRHLQEINLKIEKGTYDPDHHHAEVVSVMYEVLMFPFFFD 540
ECSSVGPLLVVLRKLDEERVTRHLQEINLKIEKGTYDPDHHHAEVVSVMYEVLMFPFFFD
Sbjct: 121 ECSSVGPLLVVLRKLDEERVTRHLQEINLKIEKGTYDPDHHHAEVVSVMYEVLMFPFFFD 180
Query: 541 DMSLCTEFEKFIESIDNIHELAFAENQEFPVSNPVRAPPAIAQEIHWNSGDGGTAFRVSG 720
DMSLCTEFEKFIESIDNIHELAFAENQEFPVSNPVRAPPAIAQEIHWNSGDGGTAFRVSG
Sbjct: 181 DMSLCTEFEKFIESIDNIHELAFAENQEFPVSNPVRAPPAIAQEIHWNSGDGGTAFRVSG 240
Query: 721 TETKDISRPLIYMAWDDITVPVSSNFSLLARRIGHKIALLIVLRGYKMNPPCPPFECAHM 900
TETKDISRPLIYMAWDDITVPVSSNFSLLARRIGHKIALLIVLRGYKMNPPCPPFECAHM
Sbjct: 241 TETKDISRPLIYMAWDDITVPVSSNFSLLARRIGHKIALLIVLRGYKMNPPCPPFECAHM 300
Query: 901 WGPSLVSSYKDSSLHISLRQPAIDLVQAILVSDATALLASLLRNNTGKFMGYEIQYDDDD 1080
WGPSLVSSYKDSSLHISLRQPAIDLVQAILVSDATALLASLLRNNTGKFMGYEIQYDDDD
Sbjct: 301 WGPSLVSSYKDSSLHISLRQPAIDLVQAILVSDATALLASLLRNNTGKFMGYEIQYDDDD 360
Query: 1081 MESEKNDEMTVDIETWLSSSAVEIKGTLGWKVATGSDDGGPGKESKNSVTVSKMCXXXXX 1260
MESEKNDEMTVDIETWLSSSAVEIKGTLGWKVATGSDDGGPGKESKNSVTVSKMC
Sbjct: 361 MESEKNDEMTVDIETWLSSSAVEIKGTLGWKVATGSDDGGPGKESKNSVTVSKMCLTLIR 420
Query: 1261 XXXXXXXCYLVQIGDECRKQWTWVPEMGETFILSLSDPDDNVRQFGKSMLEHVSNTRGPF 1440
CYLVQIGDECRKQWTWVPEMGETFILSLSDPDDNVRQFGKSMLEHVSNTRGPF
Sbjct: 421 TLKRLTTCYLVQIGDECRKQWTWVPEMGETFILSLSDPDDNVRQFGKSMLEHVSNTRGPF 480
Query: 1441 ELCPSKLSDPAPFFLFIVQVAEGRGGGHYRRSEEFRRGMTCVRLLEILPVVLGKLRVSRE 1620
ELCPSKLSDPAPFFLFIVQVAEGRGGGHYRRSEEFRRGMTCVRLLEILPVVLGKLRVSRE
Sbjct: 481 ELCPSKLSDPAPFFLFIVQVAEGRGGGHYRRSEEFRRGMTCVRLLEILPVVLGKLRVSRE 540
Query: 1621 ESCDTRGTLKDASDLKWLPDLIDWGRSQLKVVVAYWKRALVALLDILQGSNSDACSSAVQ 1800
ESCDTRGTLKDASDLKWLPDLIDWGRSQLKVVVAYWKRALVALLDILQGSNSDACSSAVQ
Sbjct: 541 ESCDTRGTLKDASDLKWLPDLIDWGRSQLKVVVAYWKRALVALLDILQGSNSDACSSAVQ 600
Query: 1801 AIRHVLSSGDTIDNALTLLNSDDVDIEQLAEQISRLVPKANEYQILKPVDVVGKLQDNMM 1980
AIRHVLSSGDTIDNALTLLNSDDVDIEQLAEQISRLVPKANEYQILKPVDVVGKLQDNMM
Sbjct: 601 AIRHVLSSGDTIDNALTLLNSDDVDIEQLAEQISRLVPKANEYQILKPVDVVGKLQDNMM 660
Query: 1981 DLTVDETEKESLKNLPSLHKSHQPDINKTLLPIKNXXXXXXXXXXXXXXXXXKLSALVLS 2160
DLTVDETEKESLKNLPSLHKSHQPDINKTLLPIKN KLSALVLS
Sbjct: 661 DLTVDETEKESLKNLPSLHKSHQPDINKTLLPIKNISQISSLKKSTSSIDASKLSALVLS 720
Query: 2161 ERDVTVSSSNIVRDLPTTNAEPSKAAGMSREAEKRQNVEDPVSSGIRPNLKKATDELGPR 2340
ERDVTVSSSNIVRDLPTTNAEPSKAAGMSREAEKRQNVEDPVSSGIRPNLKKATDELGPR
Sbjct: 721 ERDVTVSSSNIVRDLPTTNAEPSKAAGMSREAEKRQNVEDPVSSGIRPNLKKATDELGPR 780
Query: 2341 GTSKEAQKSAISNAKGMDLRKVVNETEVDPLDLALKSLKRQSLPLAKSGPIVPKRQVIQL 2520
GTSKEAQKSAISNAKGMDLRKVVNETEVDPLDLALKSLKRQSLPLAKSGPIVPKRQVIQL
Sbjct: 781 GTSKEAQKSAISNAKGMDLRKVVNETEVDPLDLALKSLKRQSLPLAKSGPIVPKRQVIQL 840
Query: 2521 CAPVNKKSDRWQRQEAGFKRFRPPKLEDWFRKILQMDYYAIVGLASTKKDESQNVGKFRE 2700
CAPVNKKSDRWQRQEAGFKRFRPPKLEDWFRKILQMDYYAIVGLASTKKDESQNVGKFRE
Sbjct: 841 CAPVNKKSDRWQRQEAGFKRFRPPKLEDWFRKILQMDYYAIVGLASTKKDESQNVGKFRE 900
Query: 2701 VPVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQEISSLEEIYYGVISVLSIERVDDFHFVR 2880
VPVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQEISSLEEIYYGVISVLSIERVDDFHFVR
Sbjct: 901 VPVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQEISSLEEIYYGVISVLSIERVDDFHFVR 960
Query: 2881 FMQDENDGSNSKSFSENDLVLFTKEHPENSNVGVNMMGKVEGREWDDKKRTSILNVRLYL 3060
FMQDENDGSNSKSFSENDLVLFTKEHPENSNVGVNMMGKVEGREWDDKKRTSILNVRLYL
Sbjct: 961 FMQDENDGSNSKSFSENDLVLFTKEHPENSNVGVNMMGKVEGREWDDKKRTSILNVRLYL 1020
Query: 3061 QNASSRLNQARRNLLERSQWHASRILNITSQIREFQALSCIKDIPVLPLILSPMNDSNYD 3240
QNASSRLNQARRNLLERSQWHASRILNITSQIREFQALSCIKDIPVLPLILSPMNDSNYD
Sbjct: 1021 QNASSRLNQARRNLLERSQWHASRILNITSQIREFQALSCIKDIPVLPLILSPMNDSNYD 1080
Query: 3241 SEVKRSDLRSLPHSLQQILKSSFNESQLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRT 3420
SEVKRSDLRSLPHSLQQILKSSFNESQLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRT
Sbjct: 1081 SEVKRSDLRSLPHSLQQILKSSFNESQLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRT 1140
Query: 3421 IVAIISGLLASASHKTSDRGNSEPGHSSSTSRQGMNPSVAVARAWQDAALAKQLNDNSET 3600
IVAIISGLLASASHKTSDRGNSEPGHSSSTSRQGMNPSVAVARAWQDAALAKQLNDNSET
Sbjct: 1141 IVAIISGLLASASHKTSDRGNSEPGHSSSTSRQGMNPSVAVARAWQDAALAKQLNDNSET 1200
Query: 3601 NRKIAEKNGRGRVLICAQSNAAVDELVSRISSLGIYGRDGKMFKPYLVRVGNAKTVHSNS 3780
NRKIAEKNGRGRVLICAQSNAAVDELVSRISSLGIYGRDGKMFKPYLVRVGNAKTVHSNS
Sbjct: 1201 NRKIAEKNGRGRVLICAQSNAAVDELVSRISSLGIYGRDGKMFKPYLVRVGNAKTVHSNS 1260
Query: 3781 MPFFLDTLVDQRLAEERMRINESKSNKGADSSALLRSNLEKVVDQITHFEAKRANINQES 3960
MPFFLDTLVDQRLAEERMRINESKSNKGADSSALLRSNLEKVVDQITHFEAKRANINQES
Sbjct: 1261 MPFFLDTLVDQRLAEERMRINESKSNKGADSSALLRSNLEKVVDQITHFEAKRANINQES 1320
Query: 3961 LDAKDKPENEHHNKDDDGKLMSDAELGIRLRRLYEQKRKIYKDLSAVQAQERKANYEMRT 4140
LDAKDKPENEHHNKDDDGKLMSDAELGIRLRRLYEQKRKIYKDLSAVQAQERKANYEMRT
Sbjct: 1321 LDAKDKPENEHHNKDDDGKLMSDAELGIRLRRLYEQKRKIYKDLSAVQAQERKANYEMRT 1380
Query: 4141 LKQKLRKSILKEAQIVVTTLSGCGGDLYSVCAESLAAHKFGSPSEDNLFDAVVIDEAAQA 4320
LKQKLRKSILKEAQIVVTTLSGCGGDLYSVCAESLAAHKFGSPSEDNLFDAVVIDEAAQA
Sbjct: 1381 LKQKLRKSILKEAQIVVTTLSGCGGDLYSVCAESLAAHKFGSPSEDNLFDAVVIDEAAQA 1440
Query: 4321 LEPATLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKFLYECSMFERLQRAGYPILML 4500
LEPATLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKFLYECSMFERLQRAGYPILML
Sbjct: 1441 LEPATLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKFLYECSMFERLQRAGYPILML 1500
Query: 4501 TQQYRMHPEICRFPSMHFYDNKLLNGVDMSSKSAPFHENHHLGPYVFYDIVDGQEHRSGD 4680
TQQYRMHPEICRFPSMHFYDNKLLNGVDMSSKSAPFHENHHLGPYVFYDIVDGQEHRSGD
Sbjct: 1501 TQQYRMHPEICRFPSMHFYDNKLLNGVDMSSKSAPFHENHHLGPYVFYDIVDGQEHRSGD 1560
Query: 4681 SSSVCNEQEAEAAVQLLRFFKKRYPSEFVAGRIGIITPYKRQLAVLRSRFTGAFGAQVTA 4860
SSSVCNEQEAEAAVQLLRFFKKRYPSEFVAGRIGIITPYKRQLAVLRSRFTGAFGAQVTA
Sbjct: 1561 SSSVCNEQEAEAAVQLLRFFKKRYPSEFVAGRIGIITPYKRQLAVLRSRFTGAFGAQVTA 1620
Query: 4861 DMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWV 5040
DMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWV
Sbjct: 1621 DMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWV 1680
Query: 5041 LGNTRTLQRDHNWGALVKDAKEREVIIPVKRPYNYMFGENVMEQNHSENLPKNFPKPDKQ 5220
LGNTRTLQRDHNWGALVKDAKEREVIIPVKRPYNYMFGENVMEQNHSENLPKNFPKPDKQ
Sbjct: 1681 LGNTRTLQRDHNWGALVKDAKEREVIIPVKRPYNYMFGENVMEQNHSENLPKNFPKPDKQ 1740
Query: 5221 HSRRKEQRAETSSDRKLRKTDGDVVPISSKGSESKHTRRNAKEEASSQREKLVASCEKVT 5400
HSRRKEQRAETSSDRKLRKTDGDVVPISSKGSESKHTRRNAKEEASSQREKLVASCEKVT
Sbjct: 1741 HSRRKEQRAETSSDRKLRKTDGDVVPISSKGSESKHTRRNAKEEASSQREKLVASCEKVT 1800
Query: 5401 SEETLRRSHEKKEKMKGREKSSNPEITXXXXXXXXXXXXXXXXXXXXXXXXXXXRANPTD 5580
SEETLRRSHEKKEKMKGREKSSNPEIT RANPTD
Sbjct: 1801 SEETLRRSHEKKEKMKGREKSSNPEITDANSSKNENSNEWKKSKKASSKLDSSKRANPTD 1860
Query: 5581 KIGQQDRQINKGNASNQGGVEDMISKRKQQREAVAAILNSSLIPSHKPKPPKRPLSPGST 5760
KIGQQDRQINKGNASNQGGVEDMISKRKQQREAVAAILNSSLIPSHKPKPPKRPLSPGST
Sbjct: 1861 KIGQQDRQINKGNASNQGGVEDMISKRKQQREAVAAILNSSLIPSHKPKPPKRPLSPGST 1920
Query: 5761 AGSHTRPPKAIKESTKNNS 5817
AGSHTRPPKAIKESTKNNS
Sbjct: 1921 AGSHTRPPKAIKESTKNNS 1939
>gb|AAG09081.1|AC026237_2 Similar to tRNA-splicing endonuclease positive effector SEN1
[Arabidopsis thaliana]|gi|25518059|pir||D86303 F17F16.1
protein - Arabidopsis thaliana
Length = 2142
Score = 2876 bits (7455), Expect = 0.0
Identities = 1485/1592 (93%), Positives = 1488/1592 (93%), Gaps = 20/1592 (1%)
Frame = +1
Query: 1081 MESEKNDEMTVDIETWLSSSAVEIKGTLGWKVATGSDDGGPGKESKNSVTVSKMCXXXXX 1260
+ESEKNDEMTVDIETWLSSSAVEIKGTLGWKVATGSDDGGPGKESKNSVTVSKMC
Sbjct: 437 VESEKNDEMTVDIETWLSSSAVEIKGTLGWKVATGSDDGGPGKESKNSVTVSKMCLTLIR 496
Query: 1261 XXXXXXXCYLVQIGDECRKQWTWVPEMGETFILSLSDPDDNVRQFGKSMLEHVSNTRGPF 1440
CYLVQIGDECRKQWTWVPEMGETFILSLSDPDDNVRQFGKSMLEHVSNTRG
Sbjct: 497 TLKRLTTCYLVQIGDECRKQWTWVPEMGETFILSLSDPDDNVRQFGKSMLEHVSNTRGLS 556
Query: 1441 ELCPSK-LSDPAPFFLF-------------------IVQVAEGRGGGHYRRSEEFRRGMT 1560
C K L LF I V + GG R+ MT
Sbjct: 557 --CGLKFLCSQTSHLLFVSSGVRHVLQQLLKEEEVAITDVVKSSAGGFLRQPNFNALPMT 614
Query: 1561 CVRLLEILPVVLGKLRVSREESCDTRGTLKDASDLKWLPDLIDWGRSQLKVVVAYWKRAL 1740
CVRLLEILPVVLGKLRVSREESCDTRGTLKDASDLKWLPDLIDWGRSQLKVVVAYWKRAL
Sbjct: 615 CVRLLEILPVVLGKLRVSREESCDTRGTLKDASDLKWLPDLIDWGRSQLKVVVAYWKRAL 674
Query: 1741 VALLDILQGSNSDACSSAVQAIRHVLSSGDTIDNALTLLNSDDVDIEQLAEQISRLVPKA 1920
VALLDILQGSNSDACSSAVQAIRHVLSSGDTIDNALTLLNSDDVDIEQLAEQISRLVPKA
Sbjct: 675 VALLDILQGSNSDACSSAVQAIRHVLSSGDTIDNALTLLNSDDVDIEQLAEQISRLVPKA 734
Query: 1921 NEYQILKPVDVVGKLQDNMMDLTVDETEKESLKNLPSLHKSHQPDINKTLLPIKNXXXXX 2100
NEYQILKPVDVVGKLQDNMMDLTVDETEKESLKNLPSLHKSHQPDINKTLLPIKN
Sbjct: 735 NEYQILKPVDVVGKLQDNMMDLTVDETEKESLKNLPSLHKSHQPDINKTLLPIKNISQIS 794
Query: 2101 XXXXXXXXXXXXKLSALVLSERDVTVSSSNIVRDLPTTNAEPSKAAGMSREAEKRQNVED 2280
KLSALVLSERDVTVSSSNIVRDLPTTNAEPSKAAGMSREAEKRQNVED
Sbjct: 795 SLKKSTSSIDASKLSALVLSERDVTVSSSNIVRDLPTTNAEPSKAAGMSREAEKRQNVED 854
Query: 2281 PVSSGIRPNLKKATDELGPRGTSKEAQKSAISNAKGMDLRKVVNETEVDPLDLALKSLKR 2460
PVSSGIRPNLKKATDELGPRGTSKEAQKSAISNAKGMDLRKVVNETEVDPLDLALKSLKR
Sbjct: 855 PVSSGIRPNLKKATDELGPRGTSKEAQKSAISNAKGMDLRKVVNETEVDPLDLALKSLKR 914
Query: 2461 QSLPLAKSGPIVPKRQVIQLCAPVNKKSDRWQRQEAGFKRFRPPKLEDWFRKILQMDYYA 2640
QSLPLAKSGPIVPKRQVIQLCAPVNKKSDRWQRQEAGFKRFRPPKLEDWFRKILQMDYYA
Sbjct: 915 QSLPLAKSGPIVPKRQVIQLCAPVNKKSDRWQRQEAGFKRFRPPKLEDWFRKILQMDYYA 974
Query: 2641 IVGLASTKKDESQNVGKFREVPVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQEISSLEEI 2820
IVGLASTKKDESQNVGKFREVPVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQEISSLEEI
Sbjct: 975 IVGLASTKKDESQNVGKFREVPVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQEISSLEEI 1034
Query: 2821 YYGVISVLSIERVDDFHFVRFMQDENDGSNSKSFSENDLVLFTKEHPENSNVGVNMMGKV 3000
YYGVISVLSIERVDDFHFVRFMQDENDGSNSKSFSENDLVLFTKEHPENSNVGVNMMGKV
Sbjct: 1035 YYGVISVLSIERVDDFHFVRFMQDENDGSNSKSFSENDLVLFTKEHPENSNVGVNMMGKV 1094
Query: 3001 EGREWDDKKRTSILNVRLYLQNASSRLNQARRNLLERSQWHASRILNITSQIREFQALSC 3180
EGREWDDKKRTSILNVRLYLQNASSRLNQARRNLLERSQWHASRILNITSQIREFQALSC
Sbjct: 1095 EGREWDDKKRTSILNVRLYLQNASSRLNQARRNLLERSQWHASRILNITSQIREFQALSC 1154
Query: 3181 IKDIPVLPLILSPMNDSNYDSEVKRSDLRSLPHSLQQILKSSFNESQLQAISVAIGSSNL 3360
IKDIPVLPLILSPMNDSNYDSEVKRSDLRSLPHSLQQILKSSFNESQLQAISVAIGSSNL
Sbjct: 1155 IKDIPVLPLILSPMNDSNYDSEVKRSDLRSLPHSLQQILKSSFNESQLQAISVAIGSSNL 1214
Query: 3361 MKAFDISLIQGPPGTGKTRTIVAIISGLLASASHKTSDRGNSEPGHSSSTSRQGMNPSVA 3540
MKAFDISLIQGPPGTGKTRTIVAIISGLLASASHKTSDRGNSEPGHSSSTSRQGMNPSVA
Sbjct: 1215 MKAFDISLIQGPPGTGKTRTIVAIISGLLASASHKTSDRGNSEPGHSSSTSRQGMNPSVA 1274
Query: 3541 VARAWQDAALAKQLNDNSETNRKIAEKNGRGRVLICAQSNAAVDELVSRISSLGIYGRDG 3720
VARAWQDAALAKQLNDNSETNRKIAEKNGRGRVLICAQSNAAVDELVSRISSLGIYGRDG
Sbjct: 1275 VARAWQDAALAKQLNDNSETNRKIAEKNGRGRVLICAQSNAAVDELVSRISSLGIYGRDG 1334
Query: 3721 KMFKPYLVRVGNAKTVHSNSMPFFLDTLVDQRLAEERMRINESKSNKGADSSALLRSNLE 3900
KMFKPYLVRVGNAKTVHSNSMPFFLDTLVDQRLAEERMRINESKSNKGADSSALLRSNLE
Sbjct: 1335 KMFKPYLVRVGNAKTVHSNSMPFFLDTLVDQRLAEERMRINESKSNKGADSSALLRSNLE 1394
Query: 3901 KVVDQITHFEAKRANINQESLDAKDKPENEHHNKDDDGKLMSDAELGIRLRRLYEQKRKI 4080
KVVDQITHFEAKRANINQESLDAKDKPENEHHNKDDDGKLMSDAELGIRLRRLYEQKRKI
Sbjct: 1395 KVVDQITHFEAKRANINQESLDAKDKPENEHHNKDDDGKLMSDAELGIRLRRLYEQKRKI 1454
Query: 4081 YKDLSAVQAQERKANYEMRTLKQKLRKSILKEAQIVVTTLSGCGGDLYSVCAESLAAHKF 4260
YKDLSAVQAQERKANYEMRTLKQKLRKSILKEAQIVVTTLSGCGGDLYSVCAESLAAHKF
Sbjct: 1455 YKDLSAVQAQERKANYEMRTLKQKLRKSILKEAQIVVTTLSGCGGDLYSVCAESLAAHKF 1514
Query: 4261 GSPSEDNLFDAVVIDEAAQALEPATLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKF 4440
GSPSEDNLFDAVVIDEAAQALEPATLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKF
Sbjct: 1515 GSPSEDNLFDAVVIDEAAQALEPATLIPLQLLKSRGTKCIMVGDPKQLPATVLSNVASKF 1574
Query: 4441 LYECSMFERLQRAGYPILMLTQQYRMHPEICRFPSMHFYDNKLLNGVDMSSKSAPFHENH 4620
LYECSMFERLQRAGYPILMLTQQYRMHPEICRFPSMHFYDNKLLNGVDMSSKSAPFHENH
Sbjct: 1575 LYECSMFERLQRAGYPILMLTQQYRMHPEICRFPSMHFYDNKLLNGVDMSSKSAPFHENH 1634
Query: 4621 HLGPYVFYDIVDGQEHRSGDSSSVCNEQEAEAAVQLLRFFKKRYPSEFVAGRIGIITPYK 4800
HLGPYVFYDIVDGQEHRSGDSSSVCNEQEAEAAVQLLRFFKKRYPSEFVAGRIGIITPYK
Sbjct: 1635 HLGPYVFYDIVDGQEHRSGDSSSVCNEQEAEAAVQLLRFFKKRYPSEFVAGRIGIITPYK 1694
Query: 4801 RQLAVLRSRFTGAFGAQVTADMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGF 4980
RQLAVLRSRFTGAFGAQVTADMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGF
Sbjct: 1695 RQLAVLRSRFTGAFGAQVTADMEMNTVDGFQGKEVDILVLSTVRATHSAPDGVNQSRIGF 1754
Query: 4981 VADVRRMNVALTRAKLSLWVLGNTRTLQRDHNWGALVKDAKEREVIIPVKRPYNYMFGEN 5160
VADVRRMNVALTRAKLSLWVLGNTRTLQRDHNWGALVKDAKEREVIIPVKRPYNYMFGEN
Sbjct: 1755 VADVRRMNVALTRAKLSLWVLGNTRTLQRDHNWGALVKDAKEREVIIPVKRPYNYMFGEN 1814
Query: 5161 VMEQNHSENLPKNFPKPDKQHSRRKEQRAETSSDRKLRKTDGDVVPISSKGSESKHTRRN 5340
VMEQNHSENLPKNFPKPDKQHSRRKEQRAETSSDRKLRKTDGDVVPISSKGSESKHTRRN
Sbjct: 1815 VMEQNHSENLPKNFPKPDKQHSRRKEQRAETSSDRKLRKTDGDVVPISSKGSESKHTRRN 1874
Query: 5341 AKEEASSQREKLVASCEKVTSEETLRRSHEKKEKMKGREKSSNPEITXXXXXXXXXXXXX 5520
AKEEASSQREKLVASCEKVTSEETLRRSHEKKEKMKGREKSSNPEIT
Sbjct: 1875 AKEEASSQREKLVASCEKVTSEETLRRSHEKKEKMKGREKSSNPEITDANSSKNENSNEW 1934
Query: 5521 XXXXXXXXXXXXXXRANPTDKIGQQDRQINKGNASNQGGVEDMISKRKQQREAVAAILNS 5700
RANPTDKIGQQDRQINKGNASNQGGVEDMISKRKQQREAVAAILNS
Sbjct: 1935 KKSKKASSKLDSSKRANPTDKIGQQDRQINKGNASNQGGVEDMISKRKQQREAVAAILNS 1994
Query: 5701 SLIPSHKPKPPKRPLSPGSTAGSHTRPPKAIK 5796
SLIPSHKPKPPKRPLSPGSTAGSHTRPPKAIK
Sbjct: 1995 SLIPSHKPKPPKRPLSPGSTAGSHTRPPKAIK 2026
Score = 600 bits (1547), Expect = e-170
Identities = 309/368 (83%), Positives = 314/368 (84%), Gaps = 8/368 (2%)
Frame = +1
Query: 1 MLSKVSPSGELLNRWRRIXXXXXXXXXXXPSAVRRLNQRKEQWFTDAFTLLISLPKDTHI 180
MLSKVSPSGELLNRWRRI PSAVRRLNQRKEQWFTDAFTLLISLPKDTHI
Sbjct: 1 MLSKVSPSGELLNRWRRIEEDEEENDDSDPSAVRRLNQRKEQWFTDAFTLLISLPKDTHI 60
Query: 181 WCGHGDIMGPLIETFYNYFKDDRVDSPLKVLWKRISEEMRLCAQCICQHHQTQEMYEKEY 360
WCGHGDIMGPLIETFYNYFKDDRVDSPLKVLWKRISEEMRLCAQCICQHHQTQEMYEKEY
Sbjct: 61 WCGHGDIMGPLIETFYNYFKDDRVDSPLKVLWKRISEEMRLCAQCICQHHQTQEMYEKEY 120
Query: 361 ECSSVGPLLVVLRKLDEERVTRHLQEINLKIEKGTYDPDHHHAEVVSVMYEVLMFPFFFD 540
ECSSVGPLLVVLRKLDEERVTRHLQEINLKIEKGTYDPDHHHAEVVSVMYEVLMFPFFFD
Sbjct: 121 ECSSVGPLLVVLRKLDEERVTRHLQEINLKIEKGTYDPDHHHAEVVSVMYEVLMFPFFFD 180
Query: 541 DMSLCTEFEKFIESIDNIHELAFAENQEFPVSNPVRAPPAIAQEIHWNSGDGGTAFRVSG 720
DMSLCTEFEKFIESIDNIHELAFAENQEFPVSNPVRAPPAIAQEIHWNSGDGGTAFRVSG
Sbjct: 181 DMSLCTEFEKFIESIDNIHELAFAENQEFPVSNPVRAPPAIAQEIHWNSGDGGTAFRVSG 240
Query: 721 TETKDISRPLIYMAWDDITVPVSSNFSLLARRIGHKIALLIVLRGYKMNPPCPPFECA-- 894
TETKDISRPLIYMAWDDITV V + I + VL ++ P F A
Sbjct: 241 TETKDISRPLIYMAWDDITVRVKGPAFEEGILEPYPIFVDTVLN--HISGDSPEFSLAVN 298
Query: 895 ------HMWGPSLVSSYKDSSLHISLRQPAIDLVQAILVSDATALLASLLRNNTGKFMGY 1056
G SL + DSSLHISLRQPAIDLVQAILVSDATALLASLLRNNTGKFMGY
Sbjct: 299 CLKELFKTLGMSLEALRDDSSLHISLRQPAIDLVQAILVSDATALLASLLRNNTGKFMGY 358
Query: 1057 EIQYDDDD 1080
EIQYDDDD
Sbjct: 359 EIQYDDDD 366
>gb|AAB63976.1| SEN1 [Saccharomyces cerevisiae]
Length = 2112
Score = 328 bits (842), Expect = 5e-88
Identities = 270/976 (27%), Positives = 450/976 (45%), Gaps = 32/976 (3%)
Frame = +1
Query: 2617 ILQMDYYAIVGLASTKKDESQNVGKFREVPVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQ 2796
ILQ DY +++ + + +G + +V F SP Y ++ +PL+L E S+Q
Sbjct: 1001 ILQWDY-----TRNSEYPDDEPIGNYSDVKDFFNSPADYQKVMKPLLLLE-------SWQ 1048
Query: 2797 EI-SSLEEIYYGVISVLSIER--VDDFHFVRFMQDENDGSNSKSFSENDLVLFT---KEH 2958
+ SS + Y S++ R V DF+ V + SE+DL++
Sbjct: 1049 GLCSSRDREDYKPFSIIVGNRTAVSDFYDV-YASVAKQVIQDCGISESDLIVMAYLPDFR 1107
Query: 2959 PENSNVGVNMMGKVEGREWDDKKRTSILNVRLYLQNASSRLN---QARRN------LLER 3111
P+ ++ ++ + T + VR ++ + RN L R
Sbjct: 1108 PDK---------RLSSDDFKKAQHTCLAKVRTLKNTKGGNVDVTLRIHRNHSFSKFLTLR 1158
Query: 3112 SQWHASRILNITSQIREFQALSCIKDIPVLPLILS--PMNDSNYDSEVKRSDLRSLPHSL 3285
S+ + +++ +T+ RE+ L ++ ++ IL P N D+ +
Sbjct: 1159 SEIYCVKVMQMTTIEREYSTLEGLEYYDLVGQILQAKPSPPVNVDAA-----------EI 1207
Query: 3286 QQILKS-SFNESQLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRTIVAIISGLLASASH 3462
+ + KS N SQ +AI ++ SLIQGPPGTGKT+TI+ II L++ +
Sbjct: 1208 ETVKKSYKLNTSQAEAIVNSVSKEGF------SLIQGPPGTGKTKTILGIIGYFLSTKNA 1261
Query: 3463 KTSDRGNSEPGHSSSTSRQGMNPSVAVARAWQDAALAKQLNDNSETNRKIAEKNGRGRVL 3642
+S+ + L NS ++ +K ++L
Sbjct: 1262 SSSN------------------------------VIKVPLEKNSSNTEQLLKKQ---KIL 1288
Query: 3643 ICAQSNAAVDELVSRISSLGIYGRDGKMFKPYLVRVGNAKTVHSNSMPFFLDTLVDQRLA 3822
ICA SNAAVDE+ R+ S G+Y + G FKP LVRVG + V+ L+ LVD+R+
Sbjct: 1289 ICAPSNAAVDEICLRLKS-GVYDKQGHQFKPQLVRVGRSDVVNVAIKDLTLEELVDKRIG 1347
Query: 3823 EERMRINESKSNKGADSSALLRSNLEKVVDQITHFEAKRANINQESLDAKDKPENEHHNK 4002
E I E K N + + + K ++E N
Sbjct: 1348 ERNYEIRTDPE-----------------------LERKFNNAVTKRRELRGKLDSESGNP 1384
Query: 4003 DDDGKLMSDAELGIRLRRLYEQKRKIYKDLSAVQAQERKANYEMRTL-KQKLRKSILKEA 4179
+ ++L +++R L + ++ +D ++ ++ NY R L ++ + IL +
Sbjct: 1385 ESPMSTEDISKLQLKIRELSKIINELGRDRDEMR-EKNSVNYRNRDLDRRNAQAHILAVS 1443
Query: 4180 QIVVTTLSGCGGDLYSVCAESLAAHKFGSPSEDNLFDAVVIDEAAQALEPATLIPLQLLK 4359
I+ +TLSG D+ + FD V+IDEA Q E +++IPL+
Sbjct: 1444 DIICSTLSGSAHDVLATMGIK--------------FDTVIIDEACQCTELSSIIPLRY-- 1487
Query: 4360 SRGTKCIMVGDPKQLPATVLSNVASKFLYECSMFERLQRAGYPILMLTQQYRMHPEICRF 4539
G +CIMVGDP QLP TVLS AS F Y S+F R+++ P L L QYRMHP I +F
Sbjct: 1488 -GGKRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEKNSSPYL-LDVQYRMHPSISKF 1545
Query: 4540 PSMHFYDNKLLNGVDMSS-KSAPFHENHHLGPYVFYDIVDGQEHRSGDSSSVCNEQEAEA 4716
PS FY +L +G M P+H+ L PY F+DI+ G++ ++ + S N +E
Sbjct: 1546 PSSEFYQGRLKDGPGMDILNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRV 1605
Query: 4717 AVQLLRFFKKRYPSEF-VAGRIGIITPYKRQLAVLRSRFTGAFGAQVTADMEMNTVDGFQ 4893
A++L+ + +++ ++ G+IGII+PY+ Q+ +R F FG + ++ NT+DGFQ
Sbjct: 1606 AIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQ 1665
Query: 4894 GKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWVLGNTRTLQRDH 5073
G+E +I+++S VRA + +S +GF+ D RRMNVALTRAK S+WVLG+ R+L +
Sbjct: 1666 GQEKEIILISCVRADDT------KSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSK 1719
Query: 5074 NWGALVKDAKEREVIIPVKRPYNYMFGENVMEQNHSENLPKNF--PKPDKQHSRRK---- 5235
W L++DAK+R + G N ++++ + F P P +Q K
Sbjct: 1720 LWRDLIEDAKDRSCLAYA------CSGFLDPRNNRAQSILRKFNVPVPSEQEDDYKLPME 1773
Query: 5236 -----EQRAETSSDRKLRKTDGDVVPISSKGSESKHTRRNAKEEASSQREKLVASCEKVT 5400
+++ D K R+ + +G E+ + K+E +++K A +K
Sbjct: 1774 YITQGPDEVKSNKDTKKRR-------VVDEGEEADKAVKKKKKEKKKEKKKSKADDKKKN 1826
Query: 5401 SEETLRRSHEKKEKMK 5448
+++ S K K
Sbjct: 1827 NKKAESPSTSSGTKKK 1842
>gb|AAB67502.1| Sen1p [Saccharomyces cerevisiae]|gi|6323462|ref|NP_013534.1|
component of a nuclear-localized tRNA splicing complex;
Sen1p [Saccharomyces
cerevisiae]|gi|3123282|sp|Q00416|SEN1_YEAST TRNA-SPLICING
ENDONUCLEASE POSITIVE EFFECTOR|gi|1078364|pir||S53416
SEN1 protein - yeast (Saccharomyces cerevisiae)
Length = 2231
Score = 328 bits (842), Expect = 5e-88
Identities = 270/976 (27%), Positives = 450/976 (45%), Gaps = 32/976 (3%)
Frame = +1
Query: 2617 ILQMDYYAIVGLASTKKDESQNVGKFREVPVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQ 2796
ILQ DY +++ + + +G + +V F SP Y ++ +PL+L E S+Q
Sbjct: 1120 ILQWDY-----TRNSEYPDDEPIGNYSDVKDFFNSPADYQKVMKPLLLLE-------SWQ 1167
Query: 2797 EI-SSLEEIYYGVISVLSIER--VDDFHFVRFMQDENDGSNSKSFSENDLVLFT---KEH 2958
+ SS + Y S++ R V DF+ V + SE+DL++
Sbjct: 1168 GLCSSRDREDYKPFSIIVGNRTAVSDFYDV-YASVAKQVIQDCGISESDLIVMAYLPDFR 1226
Query: 2959 PENSNVGVNMMGKVEGREWDDKKRTSILNVRLYLQNASSRLN---QARRN------LLER 3111
P+ ++ ++ + T + VR ++ + RN L R
Sbjct: 1227 PDK---------RLSSDDFKKAQHTCLAKVRTLKNTKGGNVDVTLRIHRNHSFSKFLTLR 1277
Query: 3112 SQWHASRILNITSQIREFQALSCIKDIPVLPLILS--PMNDSNYDSEVKRSDLRSLPHSL 3285
S+ + +++ +T+ RE+ L ++ ++ IL P N D+ +
Sbjct: 1278 SEIYCVKVMQMTTIEREYSTLEGLEYYDLVGQILQAKPSPPVNVDAA-----------EI 1326
Query: 3286 QQILKS-SFNESQLQAISVAIGSSNLMKAFDISLIQGPPGTGKTRTIVAIISGLLASASH 3462
+ + KS N SQ +AI ++ SLIQGPPGTGKT+TI+ II L++ +
Sbjct: 1327 ETVKKSYKLNTSQAEAIVNSVSKEGF------SLIQGPPGTGKTKTILGIIGYFLSTKNA 1380
Query: 3463 KTSDRGNSEPGHSSSTSRQGMNPSVAVARAWQDAALAKQLNDNSETNRKIAEKNGRGRVL 3642
+S+ + L NS ++ +K ++L
Sbjct: 1381 SSSN------------------------------VIKVPLEKNSSNTEQLLKKQ---KIL 1407
Query: 3643 ICAQSNAAVDELVSRISSLGIYGRDGKMFKPYLVRVGNAKTVHSNSMPFFLDTLVDQRLA 3822
ICA SNAAVDE+ R+ S G+Y + G FKP LVRVG + V+ L+ LVD+R+
Sbjct: 1408 ICAPSNAAVDEICLRLKS-GVYDKQGHQFKPQLVRVGRSDVVNVAIKDLTLEELVDKRIG 1466
Query: 3823 EERMRINESKSNKGADSSALLRSNLEKVVDQITHFEAKRANINQESLDAKDKPENEHHNK 4002
E I E K N + + + K ++E N
Sbjct: 1467 ERNYEIRTDPE-----------------------LERKFNNAVTKRRELRGKLDSESGNP 1503
Query: 4003 DDDGKLMSDAELGIRLRRLYEQKRKIYKDLSAVQAQERKANYEMRTL-KQKLRKSILKEA 4179
+ ++L +++R L + ++ +D ++ ++ NY R L ++ + IL +
Sbjct: 1504 ESPMSTEDISKLQLKIRELSKIINELGRDRDEMR-EKNSVNYRNRDLDRRNAQAHILAVS 1562
Query: 4180 QIVVTTLSGCGGDLYSVCAESLAAHKFGSPSEDNLFDAVVIDEAAQALEPATLIPLQLLK 4359
I+ +TLSG D+ + FD V+IDEA Q E +++IPL+
Sbjct: 1563 DIICSTLSGSAHDVLATMGIK--------------FDTVIIDEACQCTELSSIIPLRY-- 1606
Query: 4360 SRGTKCIMVGDPKQLPATVLSNVASKFLYECSMFERLQRAGYPILMLTQQYRMHPEICRF 4539
G +CIMVGDP QLP TVLS AS F Y S+F R+++ P L L QYRMHP I +F
Sbjct: 1607 -GGKRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEKNSSPYL-LDVQYRMHPSISKF 1664
Query: 4540 PSMHFYDNKLLNGVDMSS-KSAPFHENHHLGPYVFYDIVDGQEHRSGDSSSVCNEQEAEA 4716
PS FY +L +G M P+H+ L PY F+DI+ G++ ++ + S N +E
Sbjct: 1665 PSSEFYQGRLKDGPGMDILNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNMEEIRV 1724
Query: 4717 AVQLLRFFKKRYPSEF-VAGRIGIITPYKRQLAVLRSRFTGAFGAQVTADMEMNTVDGFQ 4893
A++L+ + +++ ++ G+IGII+PY+ Q+ +R F FG + ++ NT+DGFQ
Sbjct: 1725 AIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNTIDGFQ 1784
Query: 4894 GKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWVLGNTRTLQRDH 5073
G+E +I+++S VRA + +S +GF+ D RRMNVALTRAK S+WVLG+ R+L +
Sbjct: 1785 GQEKEIILISCVRADDT------KSSVGFLKDFRRMNVALTRAKTSIWVLGHQRSLAKSK 1838
Query: 5074 NWGALVKDAKEREVIIPVKRPYNYMFGENVMEQNHSENLPKNF--PKPDKQHSRRK---- 5235
W L++DAK+R + G N ++++ + F P P +Q K
Sbjct: 1839 LWRDLIEDAKDRSCLAYA------CSGFLDPRNNRAQSILRKFNVPVPSEQEDDYKLPME 1892
Query: 5236 -----EQRAETSSDRKLRKTDGDVVPISSKGSESKHTRRNAKEEASSQREKLVASCEKVT 5400
+++ D K R+ + +G E+ + K+E +++K A +K
Sbjct: 1893 YITQGPDEVKSNKDTKKRR-------VVDEGEEADKAVKKKKKEKKKEKKKSKADDKKKN 1945
Query: 5401 SEETLRRSHEKKEKMK 5448
+++ S K K
Sbjct: 1946 NKKAESPSTSSGTKKK 1961
>gb|AAL31652.1|AC079179_7 Putative DNA2-NAM7 helicase family protein [Oryza sativa]
Length = 1468
Score = 327 bits (837), Expect = 2e-87
Identities = 288/978 (29%), Positives = 453/978 (45%), Gaps = 67/978 (6%)
Frame = +1
Query: 2527 PVNKKSDRWQRQE-AGFKRFRPPKLEDWFRKILQMDYYAIVGLASTKKDESQNVGKFREV 2703
PVNK+S ++Q A +++ +E R++ S K + + + V
Sbjct: 406 PVNKRSLVSKKQTPANNMQYQDTSVERLIREV-----------TSDKFWHNPEEAELQCV 454
Query: 2704 PVRFGSPEQYIQIFQPLVLEEFKAQLQSSFQE-ISSLEEIYYGVISVLSIER-------- 2856
P F S E+YI++F+PL+ EE +AQL SS++E + S+ + ++ V ++ER
Sbjct: 455 PKSFESAEEYIRVFEPLLFEECRAQLYSSYEESLESVSRDAHVMVRVKTVERRERGWYDV 514
Query: 2857 -VDDFHFVRFMQDEND---------GSNSKSFSENDLVLFTKEHPENSNVGVNMMGKVEG 3006
V H ++ E + GS S+S N + + E E S G ++G V
Sbjct: 515 VVLPMHEYKWTFKEGEVAVLSFPRPGSASQSSRSNRRNVGSNEDTE-SECG-RLVGTVRR 572
Query: 3007 REWDDKKRTSILNVRLYLQNA--SSRLNQARRNLLERSQWHASRILNITSQIREFQALSC 3180
D + + YL ++ SS R L RS W+ + + ++ + RE+ AL
Sbjct: 573 HTPIDTRDPIGAIIHFYLGDSFDSSSETNVLRKLQPRSTWYLTSLGSLATTQREYVALHA 632
Query: 3181 IKDIPVLP----LILSPMNDSNYDSEVKRSDLRSLPHSLQQILKSSFNESQLQAIS---- 3336
+ + V L SP + Y+ + P+ L +FN QL AI
Sbjct: 633 FRRLNVQMQNAILQPSPEHFPKYEEQPPAMPDCFTPNFADH-LHRTFNGPQLSAIHWAAM 691
Query: 3337 -VAIGSSN----LMKAFDISLIQGPPGTGKTRTIVAIIS--GLLASASHKTSDRGNSEPG 3495
A G+SN + + +L+QGPPGTGKT T+ +++ L+ + + P
Sbjct: 692 HTAAGTSNGAVKKQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYAALLKKLAPE 751
Query: 3496 HSSSTSRQGMNPSVAVARAWQDAALAKQLNDNSETNRKIAEKNGRGRVLICAQSNAAVDE 3675
S N S VA D L + T K+ K R+L+CA SNAA DE
Sbjct: 752 SYKQVSGNTSNSSETVAAGSIDEVLQSMDQNLFRTLPKLCPKP---RMLVCAPSNAATDE 808
Query: 3676 LVSRISSLGIYGRDGKMFKPYLVRVGNAKTVHSNSMPFFLDTLVDQRLAEERMRINESKS 3855
L++R+ G + K+++P + RVG V S S Q ++ ER
Sbjct: 809 LLARVLDRGFIDGEMKVYRPDVARVG----VDSQSR-------AAQAVSVERR------- 850
Query: 3856 NKGADSSALLRSNLEKVVDQITHFEAKRANINQE--------SLDAKDKPENEHHNKDDD 4011
+ LL ++V+ + + + ++QE ++ A D D
Sbjct: 851 -----TDQLLMKGRDEVIGWLQQLKCREQQLSQEIALLQRELTMVAAAGRSQGSVGVDPD 905
Query: 4012 GKLMSDAELGIRLRRL---YEQKRKIYKDLSAVQAQERK----ANYEMRTLKQKLRKSIL 4170
D L++L E + K+ ++S + E + +N+ M + L S
Sbjct: 906 VLAQRDRSRDFLLQKLAASVESRDKVLVEMSRLLILESRFRVGSNFNMEDARASLEASFA 965
Query: 4171 KEAQIVVTTLSGCGGDLYSVCAESLAAHKFGSPSEDNLFDAVVIDEAAQALEPATLIPLQ 4350
EA+IV TT+S G L+S + FD VVIDEAAQA E A L PL
Sbjct: 966 NEAEIVFTTVSSSGRKLFSRLSHG--------------FDMVVIDEAAQASEVAVLPPLS 1011
Query: 4351 LLKSRGTKCIMVGDPKQLPATVLSNVASKFLYECSMFERLQRAGYPILMLTQQYRMHPEI 4530
L +R C++VGDP+QLPATV+S A +Y S+FER Q +G P ++L+ QYRMHP+I
Sbjct: 1012 LGAAR---CVLVGDPQQLPATVISKAAGTLMYSRSLFERFQLSGCPTILLSVQYRMHPQI 1068
Query: 4531 CRFPSMHFYDNKLLNGVD-MSSKSAPFHENHHLGPYVFYDIVDGQEHRSGDSSSVCNEQE 4707
FPS HFY +L + + ++ + + PY+FYDI G+E G SSS N E
Sbjct: 1069 REFPSRHFYQGRLTDSESVVKLPDEAYYRDALMAPYIFYDISHGRESHRGGSSSYQNVHE 1128
Query: 4708 AEAAVQLLRFFKKRYPSE-FVAGRIGIITPYKRQLAVLRSRFTGAFGAQVTADMEMNTVD 4884
A+ ++L +K + +GIITPYK QL L+ F + D+ +NTVD
Sbjct: 1129 AQFVLRLYENLQKFLRANGGKKASVGIITPYKLQLKCLQREFEEVMSTEDGKDIYINTVD 1188
Query: 4885 GFQGKEVDILVLSTVRATHSAPDGVNQSRIGFVADVRRMNVALTRAKLSLWVLGNTRTLQ 5064
FQG+E D++++S VRA++ +GFVAD+RRMNVALTRA+ +LWV+GN L
Sbjct: 1189 AFQGQERDVIIMSCVRASNHG--------VGFVADIRRMNVALTRARRALWVVGNAGALM 1240
Query: 5065 RDHNWGALVKDAKEREVII---PVKRPYNYMFGENVMEQNHSENL---------PKNFPK 5208
+ +W L+ DAK R+ + + + + M N +N S N+ P++
Sbjct: 1241 QSEDWALLIADAKARKCFMDLDTIPKDFLAMKISNTPGRNTSNNIRNMRTGGPRPRHLEM 1300
Query: 5209 -PDKQHSRRKEQRAETSS 5259
PD + S R ++ ++S
Sbjct: 1301 LPDSRVSMRPDEDERSNS 1318
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.316 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 138
effective length of database: 245,524,063
effective search space used: 442188837463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)