BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At2g19370.f
(309 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01285 hypothetical protein At2g19370 [imported] - Ara... 40 0.010
>pir||T01285 hypothetical protein At2g19370 [imported] - Arabidopsis
thaliana|gi|3135267|gb|AAC16467.1| unknown protein
[Arabidopsis thaliana]|gi|15224771|ref|NP_179527.1|
unknown protein; protein id: At2g19370.1 [Arabidopsis
thaliana]
Length = 102
Score = 39.7 bits (91), Expect = 0.010
Identities = 21/38 (55%), Positives = 21/38 (55%)
Frame = +1
Query: 193 KHKPATLAKNXXXXXXXXXXXXXXXXXISIIDGYESQF 306
KHKPATLAKN ISIIDGYESQF
Sbjct: 65 KHKPATLAKNRRRRFVKNRRRRDHRRRISIIDGYESQF 102
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 78
effective length of database: 326,386,843
effective search space used: 7833284232
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)