BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At2g12230.f
(84 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A84502 probable C-1-tetrahydrofolate synthase [importe... 61 4e-09
gb|AAH08629.1|AAH08629 DKFZP586G1517 protein [Homo sapiens] 49 2e-05
gb|AAH45019.1| Similar to C1-tetrahydrofolate synthase [Xen... 49 2e-05
gb|AAA59574.1| MDMCSF (EC 1.5.1.5; EC 3.5.4.9; EC 6.3.4.3)|... 49 2e-05
dbj|BAC30053.1| unnamed protein product [Mus musculus] 49 2e-05
>pir||A84502 probable C-1-tetrahydrofolate synthase [imported] - Arabidopsis
thaliana|gi|4038058|gb|AAC97239.1| putative
C-1-tetrahydrofolate synthase [Arabidopsis
thaliana]|gi|15224387|ref|NP_178926.1| putative
C-1-tetrahydrofolate synthase; protein id: At2g12230.1
[Arabidopsis thaliana]
Length = 27
Score = 61.2 bits (147), Expect = 4e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 1 MLIFVVVISTGWYNEYNAWTSYKTLFL 81
MLIFVVVISTGWYNEYNAWTSYKTLFL
Sbjct: 1 MLIFVVVISTGWYNEYNAWTSYKTLFL 27
>gb|AAH08629.1|AAH08629 DKFZP586G1517 protein [Homo sapiens]
Length = 366
Score = 48.9 bits (115), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 332 YPLVGTMSTMPGLPTRPCFY 351
>gb|AAH45019.1| Similar to C1-tetrahydrofolate synthase [Xenopus laevis]
Length = 934
Score = 48.9 bits (115), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 900 YPLVGTMSTMPGLPTRPCFY 919
>gb|AAA59574.1| MDMCSF (EC 1.5.1.5; EC 3.5.4.9; EC
6.3.4.3)|gi|115206|sp|P11586|C1TC_HUMAN
C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF
synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase ; Methenyltetrahydrofolate cyclohydrolase
; Formyltetrahydrofolate synthetase
]|gi|88152|pir||A31903 methylenetetrahydrofolate
dehydrogenase (NADP) (EC 1.5.1.5) - human
Length = 935
Score = 48.9 bits (115), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 901 YPLVGTMSTMPGLPTRPCFY 920
>dbj|BAC30053.1| unnamed protein product [Mus musculus]
Length = 977
Score = 48.9 bits (115), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 23 YPLVGTMSTMPGLPTRPCFY 82
YPLVGTMSTMPGLPTRPCFY
Sbjct: 943 YPLVGTMSTMPGLPTRPCFY 962
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 3
effective length of database: 427,465,318
effective search space used: 10259167632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)