BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At2g10920.f
(198 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E84494 hypothetical protein At2g10920 [imported] - Ara... 39 0.020
>pir||E84494 hypothetical protein At2g10920 [imported] - Arabidopsis
thaliana|gi|4733963|gb|AAD28646.1| unknown protein
[Arabidopsis thaliana]|gi|15227357|ref|NP_178867.1|
unknown protein; protein id: At2g10920.1 [Arabidopsis
thaliana]
Length = 65
Score = 38.9 bits (89), Expect = 0.020
Identities = 23/65 (35%), Positives = 23/65 (35%)
Frame = +1
Query: 1 MNTXXXXXXXXXXXXITRDIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGLVIKDSL 180
MNT ITRDIA WGLVIKDSL
Sbjct: 1 MNTEEVVAEMEEAVVITRDIAEVVVEKDTVVVAVREVAKEEVTLEATEETEWGLVIKDSL 60
Query: 181 VLCHR 195
VLCHR
Sbjct: 61 VLCHR 65
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 41
effective length of database: 376,252,224
effective search space used: 9030053376
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)