BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At2g06390.f
         (84 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||A84477  5S ribosomal RNA [imported] - Arabidopsis thali...    57   8e-08
pir||T47282  hypothetical protein F26B15.40 - Arabidopsis th...    39   0.017
gb|AAL91595.1|AC099400_1  Putative polyprotein [Oryza sativa...    37   0.11 
dbj|BAC20774.1|  hypothetical protein~predicted by GENSCAN e...    34   0.72 
dbj|BAB67866.1|  P0487H02.26 [Oryza sativa (japonica cultiva...    32   2.1  

>pir||A84477 5S ribosomal RNA [imported] - Arabidopsis
          thaliana|gi|20197917|gb|AAM15310.1| 5S ribosomal RNA
          [Arabidopsis thaliana]|gi|15225100|ref|NP_178681.1| 5S
          ribosomal RNA; protein id: At2g06390.1 [Arabidopsis
          thaliana]
          Length = 27

 Score = 57.0 bits (136), Expect = 8e-08
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +1

Query: 1  MVPTITSRKVTHPETTPVQARLTVEFS 81
          MVPTITSRKVTHPETTPVQARLTVEFS
Sbjct: 1  MVPTITSRKVTHPETTPVQARLTVEFS 27



>pir||T47282 hypothetical protein F26B15.40 - Arabidopsis
           thaliana|gi|7543896|emb|CAB87233.1| hypothetical protein
           [Arabidopsis thaliana]|gi|15228491|ref|NP_189810.1|
           hypothetical protein; protein id: At3g42240.1
           [Arabidopsis thaliana]
          Length = 148

 Score = 39.3 bits (90), Expect = 0.017
 Identities = 18/22 (81%), Positives = 19/22 (85%)
 Frame = -2

Query: 68  VKRAWTGVVSGWVTFREVIVGT 3
           VK AWTG+VS  VTFREVIVGT
Sbjct: 44  VKHAWTGIVSRLVTFREVIVGT 65



>gb|AAL91595.1|AC099400_1 Putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 893

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 12/25 (48%), Positives = 21/25 (84%)
 Frame = -2

Query: 80  ENSTVKRAWTGVVSGWVTFREVIVG 6
           +NS +KRAW+  +SGWVT +++++G
Sbjct: 479 KNSEIKRAWSAAISGWVTDQKILLG 503



>dbj|BAC20774.1| hypothetical protein~predicted by GENSCAN etc. [Oryza sativa
           (japonica cultivar-group)]
          Length = 349

 Score = 33.9 bits (76), Expect = 0.72
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 80  ENSTVKRAWTGVVSGWVTFREVI 12
           +NS VKRAW   +SGWV  RE++
Sbjct: 236 KNSKVKRAWPRAISGWVADREIL 258



>dbj|BAB67866.1| P0487H02.26 [Oryza sativa (japonica
           cultivar-group)]|gi|14495218|dbj|BAB60937.1| P0682B08.7
           [Oryza sativa (japonica cultivar-group)]
          Length = 1226

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 15/22 (68%), Positives = 16/22 (72%)
 Frame = +3

Query: 15  HFPEGHPS*NYSSPSTLNCRVL 80
           +FP GHPS N   PSTLN RVL
Sbjct: 704 NFPVGHPSQNCYRPSTLNLRVL 725



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 3
effective length of database: 427,465,318
effective search space used: 10259167632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)