BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At1g73420.f
         (270 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_009044.1|  trichohyalin [Homo sapiens]|gi|292836|gb|A...    35   0.20 
emb|CAD25183.1|  hypothetical protein [Encephalitozoon cunic...    33   0.76 
dbj|BAA01446.1|  nuclear protein [Saccharomyces cerevisiae]|...    33   0.76 
sp|P53935|YNJ1_YEAST  HYPOTHETICAL 141.5 KD PROTEIN IN YPT53...    33   0.76 
gb|AAA35120.1|  STH1 protein                                       33   0.76 

>ref|NP_009044.1| trichohyalin [Homo sapiens]|gi|292836|gb|AAA65582.1|
           trichohyalin|gi|586120|sp|Q07283|TRHY_HUMAN
           Trichohyalin|gi|539701|pir||A45973 trichohyalin - human
          Length = 1898

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 16/49 (32%), Positives = 31/49 (62%)
 Frame = +1

Query: 55  REHMQRKKFQIPGEMDEKQRRIEIRTIPKTMRNSTEIKREQVKEKRELQ 201
           RE  +R++ Q+  E +E++R  ++R   +  R   +++REQ +E+RE Q
Sbjct: 341 REQEERREQQLRREQEEERREQQLRREQEEERREQQLRREQEEERREQQ 389




 Score = 30.4 bits (67), Expect = 6.4
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +1

Query: 31  KELSRKKPREHMQRKKFQIPGEMDEKQRRIEIRTIPKTMRNSTEIKREQVKEKRELQQ 204
           +E  RK  R+ ++R++       +E+Q++  +R   +  R   E +REQ +E+RE Q+
Sbjct: 275 EEQLRKLERQELRRER------QEEEQQQQRLRREQQLRRKQEEERREQQEERREQQE 326



>emb|CAD25183.1| hypothetical protein [Encephalitozoon
           cuniculi]|gi|19074073|ref|NP_584679.1| hypothetical
           protein [Encephalitozoon cuniculi]
          Length = 616

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +1

Query: 19  QGMSKELSRKKPREHMQRKKFQIPGEMDEKQRRIEIRTIPKTMRNSTEIKREQVKEKREL 198
           +G+  E      RE  +RK+ +   EM+E++RR E R      +N  E+ R   +EKRE 
Sbjct: 302 KGIDDESINNAVREVRERKRLEEMREMEERKRREEERA-----KNEEELLRMVEREKREE 356

Query: 199 QQG 207
            +G
Sbjct: 357 SKG 359



>dbj|BAA01446.1| nuclear protein [Saccharomyces cerevisiae]|gi|1078159|pir||S49883
           nuclear protein STH1 - yeast (Saccharomyces
           cerevisiae)|gi|599991|emb|CAA86866.1| nuclear protein
           [Saccharomyces cerevisiae]|gi|6322065|ref|NP_012140.1|
           helicase related protein, snf2 homolog; Sth1p
           [Saccharomyces
           cerevisiae]|gi|417373|sp|P32597|STH1_YEAST NUCLEAR
           PROTEIN STH1/NPS1
          Length = 1359

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 14/38 (36%), Positives = 29/38 (75%), Gaps = 3/38 (7%)
 Frame = +1

Query: 109 QRRIEIRT---IPKTMRNSTEIKREQVKEKRELQQGMH 213
           QR ++IR+   +P+T+R + E++R+Q+ EKR+ ++ +H
Sbjct: 286 QRSVQIRSKVIVPQTVRLAEELERQQLLEKRKKERNLH 323



>sp|P53935|YNJ1_YEAST HYPOTHETICAL 141.5 KD PROTEIN IN YPT53-RHO2 INTERGENIC
           REGION|gi|758297|emb|CAA59826.1| ORF N2231
           [Saccharomyces cerevisiae]|gi|1301994|emb|CAA95967.1|
           ORF YNL091w [Saccharomyces
           cerevisiae]|gi|6324238|ref|NP_014308.1| Negative
           affector of Salt Tolerance; Nst1p
           [Saccharomyces cerevisiae]|gi|1077462|pir||S52734
           hypothetical protein YNL091w - yeast (Saccharomyces
           cerevisiae)
          Length = 1240

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 17/58 (29%), Positives = 35/58 (60%)
 Frame = +1

Query: 31  KELSRKKPREHMQRKKFQIPGEMDEKQRRIEIRTIPKTMRNSTEIKREQVKEKRELQQ 204
           +E  RKK  E  ++K  +    ++E+QRR E++   K  +   E+KR++ +EK+ +++
Sbjct: 689 REAQRKKVEEAKRKKDEERKRRLEEQQRREEMQ--EKQRKQKEELKRKREEEKKRIRE 744



>gb|AAA35120.1| STH1 protein
          Length = 1352

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 14/38 (36%), Positives = 29/38 (75%), Gaps = 3/38 (7%)
 Frame = +1

Query: 109 QRRIEIRT---IPKTMRNSTEIKREQVKEKRELQQGMH 213
           QR ++IR+   +P+T+R + E++R+Q+ EKR+ ++ +H
Sbjct: 286 QRSVQIRSKVIVPQTVRLAEELERQQLLEKRKKERNLH 323



  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.315    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 65
effective length of database: 343,907,112
effective search space used: 8253770688
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)