BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g67500.f
(5616 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG52299.1|AC011020_6 putative DNA polymerase zeta catal... 3562 0.0
gb|AAC18785.1|AAC18785 Similar to putative DNA polymerase g... 3519 0.0
dbj|BAC16650.1| putative DNA-directed DNA polymerase homolo... 1114 0.0
sp|Q61493|DPOZ_MOUSE DNA polymerase zeta catalytic subunit ... 673 0.0
dbj|BAA90768.1| DNA polymerase [Mus musculus] 673 0.0
>gb|AAG52299.1|AC011020_6 putative DNA polymerase zeta catalytic subunit [Arabidopsis
thaliana]|gi|25404675|pir||D96698 probable DNA polymerase
zeta catalytic subunit F12B7.5 [imported] - Arabidopsis
thaliana
Length = 1871
Score = 3562 bits (9236), Expect = 0.0
Identities = 1789/1871 (95%), Positives = 1789/1871 (95%)
Frame = +1
Query: 1 MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC 180
MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC
Sbjct: 1 MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC 60
Query: 181 LHIHRALPYLYIPCSEIPLEHHKGVDGSTXXXXXXXXXXXXXXGNAASKRQHIHDCEIVR 360
LHIHRALPYLYIPCSEIPLEHHKGVDGST GNAASKRQHIHDCEIVR
Sbjct: 61 LHIHRALPYLYIPCSEIPLEHHKGVDGSTLALSLELEKALKLKGNAASKRQHIHDCEIVR 120
Query: 361 AKKFYGYHSTEEAFVKIYLYPYSSYHPPDXXXXXXXXXXXXXXXXXXQPYESHIPFILQF 540
AKKFYGYHSTEEAFVKIYLYPYSSYHPPD QPYESHIPFILQF
Sbjct: 121 AKKFYGYHSTEEAFVKIYLYPYSSYHPPDVARAASLLLAGAVLGKSLQPYESHIPFILQF 180
Query: 541 LVDYNLYGMGHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSF 720
LVDYNLYGMGHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSF
Sbjct: 181 LVDYNLYGMGHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSF 240
Query: 721 PVWSLSTIPGQWMWNLSEESDTPLXXXXXXXXXXXXXXXLCELEGDATSSDILNQQFKMY 900
PVWSLSTIPGQWMWNLSEESDTPL LCELEGDATSSDILNQQFKMY
Sbjct: 241 PVWSLSTIPGQWMWNLSEESDTPLSQSQHRHQHHYRRQSLCELEGDATSSDILNQQFKMY 300
Query: 901 NSLSQAQSDTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPSAADVLQTMSDYVGFGNML 1080
NSLSQAQSDTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPSAADVLQTMSDYVGFGNML
Sbjct: 301 NSLSQAQSDTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPSAADVLQTMSDYVGFGNML 360
Query: 1081 KEMLNKVELSPPGMKPTAVSSAGPDMHAKPEITDLQALNHMVGTCSEFPASEQLSPLGEK 1260
KEMLNKVELSPPGMKPTAVSSAGPDMHAKPEITDLQALNHMVGTCSEFPASEQLSPLGEK
Sbjct: 361 KEMLNKVELSPPGMKPTAVSSAGPDMHAKPEITDLQALNHMVGTCSEFPASEQLSPLGEK 420
Query: 1261 SEEASMENDEYMKTPTDRDTPAQIQDAEALGLFKWFASSQAAEDINSDDEILRETILSPL 1440
SEEASMENDEYMKTPTDRDTPAQIQDAEALGLFKWFASSQAAEDINSDDEILRETILSPL
Sbjct: 421 SEEASMENDEYMKTPTDRDTPAQIQDAEALGLFKWFASSQAAEDINSDDEILRETILSPL 480
Query: 1441 LPLASINKVLEMASTDYVSQSQKECQDILDSQENLPDFGSSTKRALPSNPDSQNLRTSSD 1620
LPLASINKVLEMASTDYVSQSQKECQDILDSQENLPDFGSSTKRALPSNPDSQNLRTSSD
Sbjct: 481 LPLASINKVLEMASTDYVSQSQKECQDILDSQENLPDFGSSTKRALPSNPDSQNLRTSSD 540
Query: 1621 KQSLEIEVASDVPDSSTSNGASENSFRRYRKSDLHTSEVMEYKNRSFSKSNKPSNSVWGP 1800
KQSLEIEVASDVPDSSTSNGASENSFRRYRKSDLHTSEVMEYKNRSFSKSNKPSNSVWGP
Sbjct: 541 KQSLEIEVASDVPDSSTSNGASENSFRRYRKSDLHTSEVMEYKNRSFSKSNKPSNSVWGP 600
Query: 1801 LPFTLTKNLQKDFDSTNASDKLGLTKISSYPMNEMTDNYIVPVKEHQADVCNTIDRNVLA 1980
LPFTLTKNLQKDFDSTNASDKLGLTKISSYPMNEMTDNYIVPVKEHQADVCNTIDRNVLA
Sbjct: 601 LPFTLTKNLQKDFDSTNASDKLGLTKISSYPMNEMTDNYIVPVKEHQADVCNTIDRNVLA 660
Query: 1981 GCSLRDLMRKKRLCHGESPVSQHMKSRKVRDSRHGEKNECTLRCEAKKQGPALSAEFSEF 2160
GCSLRDLMRKKRLCHGESPVSQHMKSRKVRDSRHGEKNECTLRCEAKKQGPALSAEFSEF
Sbjct: 661 GCSLRDLMRKKRLCHGESPVSQHMKSRKVRDSRHGEKNECTLRCEAKKQGPALSAEFSEF 720
Query: 2161 VCGDTPNLSPIDSGNCECNISTESSELHSVDRCSAKETASQNSDEVLRNLSSTTVPFGKD 2340
VCGDTPNLSPIDSGNCECNISTESSELHSVDRCSAKETASQNSDEVLRNLSSTTVPFGKD
Sbjct: 721 VCGDTPNLSPIDSGNCECNISTESSELHSVDRCSAKETASQNSDEVLRNLSSTTVPFGKD 780
Query: 2341 PQTVESGTLVSSNIHVGIEIDSVQKSGREQESTANETDETGRLICLTLSKKPPSLDCLSA 2520
PQTVESGTLVSSNIHVGIEIDSVQKSGREQESTANETDETGRLICLTLSKKPPSLDCLSA
Sbjct: 781 PQTVESGTLVSSNIHVGIEIDSVQKSGREQESTANETDETGRLICLTLSKKPPSLDCLSA 840
Query: 2521 GLQDSAHSHEIHAREKQHDEYEGNSNDIPFFPLEDNKEEKKHFFQGTSLGIPLHHLNDGS 2700
GLQDSAHSHEIHAREKQHDEYEGNSNDIPFFPLEDNKEEKKHFFQGTSLGIPLHHLNDGS
Sbjct: 841 GLQDSAHSHEIHAREKQHDEYEGNSNDIPFFPLEDNKEEKKHFFQGTSLGIPLHHLNDGS 900
Query: 2701 NLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRGASFTDLASASNVVSV 2880
NLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRGASFTDLASASNVVSV
Sbjct: 901 NLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRGASFTDLASASNVVSV 960
Query: 2881 SEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGPDGKSGPTPL 3060
SEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGPDGKSGPTPL
Sbjct: 961 SEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGPDGKSGPTPL 1020
Query: 3061 SQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVAEVFV 3240
SQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVAEVFV
Sbjct: 1021 SQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVAEVFV 1080
Query: 3241 LLFSPDSIDQRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLA 3420
LLFSPDSIDQRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLA
Sbjct: 1081 LLFSPDSIDQRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLA 1140
Query: 3421 ERAAQLGIRFLNNISRXXXXXXXXXXDNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRT 3600
ERAAQLGIRFLNNISR DNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRT
Sbjct: 1141 ERAAQLGIRFLNNISRTPSPTTTNNSDNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRT 1200
Query: 3601 HASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAG 3780
HASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAG
Sbjct: 1201 HASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAG 1260
Query: 3781 ARYRCIEYVIRRANLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLA 3960
ARYRCIEYVIRRANLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLA
Sbjct: 1261 ARYRCIEYVIRRANLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLA 1320
Query: 3961 HTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFS 4140
HTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFS
Sbjct: 1321 HTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFS 1380
Query: 4141 TCLGKLAHLKMNTLGVSSYSLDLDVLQDLNQILQTPNSVMYVPPEVRRGILPRLLEEILS 4320
TCLGKLAHLKMNTLGVSSYSLDLDVLQDLNQILQTPNSVMYVPPEVRRGILPRLLEEILS
Sbjct: 1381 TCLGKLAHLKMNTLGVSSYSLDLDVLQDLNQILQTPNSVMYVPPEVRRGILPRLLEEILS 1440
Query: 4321 TRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQ 4500
TRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQ
Sbjct: 1441 TRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQ 1500
Query: 4501 CGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEMNPH 4680
CGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEMNPH
Sbjct: 1501 CGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEMNPH 1560
Query: 4681 PVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAKTMEQSL 4860
PVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAKTMEQSL
Sbjct: 1561 PVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAKTMEQSL 1620
Query: 4861 RLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAIVAT 5040
RLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAIVAT
Sbjct: 1621 RLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAIVAT 1680
Query: 5041 KSMKADPRTEPRYAERVPYVVIHGEPGARXXXXXXXXXXXXXXXTPYRLNDLYYINKQII 5220
KSMKADPRTEPRYAERVPYVVIHGEPGAR TPYRLNDLYYINKQII
Sbjct: 1681 KSMKADPRTEPRYAERVPYVVIHGEPGARLVDMVVDPLVLLDVDTPYRLNDLYYINKQII 1740
Query: 5221 PALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILCGEVV 5400
PALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILCGEVV
Sbjct: 1741 PALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILCGEVV 1800
Query: 5401 QESAQLCNRCLQNKSAAAATIVWKTSKLEREMQHLATVSTPKSNVYELLQNLVTFXXXXX 5580
QESAQLCNRCLQNKSAAAATIVWKTSKLEREMQHLATVSTPKSNVYELLQNLVTF
Sbjct: 1801 QESAQLCNRCLQNKSAAAATIVWKTSKLEREMQHLATVSTPKSNVYELLQNLVTFTTIIL 1860
Query: 5581 XXXXXKRSCAS 5613
KRSCAS
Sbjct: 1861 LSLLSKRSCAS 1871
>gb|AAC18785.1|AAC18785 Similar to putative DNA polymerase gb|M29683 from S. cerevisiae.
[Arabidopsis thaliana]|gi|7484936|pir||T02155
DNA-directed DNA polymerase homolog T1F15.3 - Arabidopsis
thaliana|gi|15220454|ref|NP_176917.1| hypothetical
protein; protein id: At1g67500.1 [Arabidopsis thaliana]
Length = 1894
Score = 3519 bits (9125), Expect = 0.0
Identities = 1765/1838 (96%), Positives = 1766/1838 (96%)
Frame = +1
Query: 1 MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC 180
MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC
Sbjct: 1 MADSQSGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTC 60
Query: 181 LHIHRALPYLYIPCSEIPLEHHKGVDGSTXXXXXXXXXXXXXXGNAASKRQHIHDCEIVR 360
LHIHRALPYLYIPCSEIPLEHHKGVDGST GNAASKRQHIHDCEIVR
Sbjct: 61 LHIHRALPYLYIPCSEIPLEHHKGVDGSTLALSLELEKALKLKGNAASKRQHIHDCEIVR 120
Query: 361 AKKFYGYHSTEEAFVKIYLYPYSSYHPPDXXXXXXXXXXXXXXXXXXQPYESHIPFILQF 540
AKKFYGYHSTEEAFVKIYLYPYSSYHPPD QPYESHIPFILQF
Sbjct: 121 AKKFYGYHSTEEAFVKIYLYPYSSYHPPDVARAASLLLAGAVLGKSLQPYESHIPFILQF 180
Query: 541 LVDYNLYGMGHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSF 720
LVDYNLYGMGHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSF
Sbjct: 181 LVDYNLYGMGHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSF 240
Query: 721 PVWSLSTIPGQWMWNLSEESDTPLXXXXXXXXXXXXXXXLCELEGDATSSDILNQQFKMY 900
PVWSLSTIPGQWMWNLSEESDTPL LCELEGDATSSDILNQQFKMY
Sbjct: 241 PVWSLSTIPGQWMWNLSEESDTPLSQSQHRHQHHYRRQSLCELEGDATSSDILNQQFKMY 300
Query: 901 NSLSQAQSDTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPSAADVLQTMSDYVGFGNML 1080
NSLSQAQSDTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPSAADVLQTMSDYVGFGNML
Sbjct: 301 NSLSQAQSDTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPSAADVLQTMSDYVGFGNML 360
Query: 1081 KEMLNKVELSPPGMKPTAVSSAGPDMHAKPEITDLQALNHMVGTCSEFPASEQLSPLGEK 1260
KEMLNKVELSPPGMKPTAVSSAGPDMHAKPEITDLQALNHMVGTCSEFPASEQLSPLGEK
Sbjct: 361 KEMLNKVELSPPGMKPTAVSSAGPDMHAKPEITDLQALNHMVGTCSEFPASEQLSPLGEK 420
Query: 1261 SEEASMENDEYMKTPTDRDTPAQIQDAEALGLFKWFASSQAAEDINSDDEILRETILSPL 1440
SEEASMENDEYMKTPTDRDTPAQIQDAEALGLFKWFASSQAAEDINSDDEILRETILSPL
Sbjct: 421 SEEASMENDEYMKTPTDRDTPAQIQDAEALGLFKWFASSQAAEDINSDDEILRETILSPL 480
Query: 1441 LPLASINKVLEMASTDYVSQSQKECQDILDSQENLPDFGSSTKRALPSNPDSQNLRTSSD 1620
LPLASINKVLEMASTDYVSQSQKECQDILDSQENLPDFGSSTKRALPSNPDSQNLRTSSD
Sbjct: 481 LPLASINKVLEMASTDYVSQSQKECQDILDSQENLPDFGSSTKRALPSNPDSQNLRTSSD 540
Query: 1621 KQSLEIEVASDVPDSSTSNGASENSFRRYRKSDLHTSEVMEYKNRSFSKSNKPSNSVWGP 1800
KQSLEIEVASDVPDSSTSNGASENSFRRYRKSDLHTSEVMEYKNRSFSKSNKPSNSVWGP
Sbjct: 541 KQSLEIEVASDVPDSSTSNGASENSFRRYRKSDLHTSEVMEYKNRSFSKSNKPSNSVWGP 600
Query: 1801 LPFTLTKNLQKDFDSTNASDKLGLTKISSYPMNEMTDNYIVPVKEHQADVCNTIDRNVLA 1980
LPFTLTKNLQKDFDSTNASDKLGLTKISSYPMNEMTDNYIVPVKEHQADVCNTIDRNVLA
Sbjct: 601 LPFTLTKNLQKDFDSTNASDKLGLTKISSYPMNEMTDNYIVPVKEHQADVCNTIDRNVLA 660
Query: 1981 GCSLRDLMRKKRLCHGESPVSQHMKSRKVRDSRHGEKNECTLRCEAKKQGPALSAEFSEF 2160
GCSLRDLMRKKRLCHGESPVSQHMKSRKVRDSRHGEKNECTLRCEAKKQGPALSAEFSEF
Sbjct: 661 GCSLRDLMRKKRLCHGESPVSQHMKSRKVRDSRHGEKNECTLRCEAKKQGPALSAEFSEF 720
Query: 2161 VCGDTPNLSPIDSGNCECNISTESSELHSVDRCSAKETASQNSDEVLRNLSSTTVPFGKD 2340
VCGDTPNLSPIDSGNCECNISTESSELHSVDRCSAKETASQNSDEVLRNLSSTTVPFGKD
Sbjct: 721 VCGDTPNLSPIDSGNCECNISTESSELHSVDRCSAKETASQNSDEVLRNLSSTTVPFGKD 780
Query: 2341 PQTVESGTLVSSNIHVGIEIDSVQKSGREQESTANETDETGRLICLTLSKKPPSLDCLSA 2520
PQTVESGTLVSSNIHVGIEIDSVQKSGREQESTANETDETGRLICLTLSKKPPSLDCLSA
Sbjct: 781 PQTVESGTLVSSNIHVGIEIDSVQKSGREQESTANETDETGRLICLTLSKKPPSLDCLSA 840
Query: 2521 GLQDSAHSHEIHAREKQHDEYEGNSNDIPFFPLEDNKEEKKHFFQGTSLGIPLHHLNDGS 2700
GLQDSAHSHEIHAREKQHDEYEGNSNDIPFFPLEDNKEEKKHFFQGTSLGIPLHHLNDGS
Sbjct: 841 GLQDSAHSHEIHAREKQHDEYEGNSNDIPFFPLEDNKEEKKHFFQGTSLGIPLHHLNDGS 900
Query: 2701 NLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRGASFTDLASASNVVSV 2880
NLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRGASFTDLASASNVVSV
Sbjct: 901 NLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDNHNDRGASFTDLASASNVVSV 960
Query: 2881 SEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGPDGKSGPTPL 3060
SEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGPDGKSGPTPL
Sbjct: 961 SEHVEQHNNLFVNSESNAYTESEIDLKPKGTFLNLNLQASVSQELSQISGPDGKSGPTPL 1020
Query: 3061 SQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVAEVFV 3240
SQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVAEVFV
Sbjct: 1021 SQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSVNVIALVVQNDDSFVAEVFV 1080
Query: 3241 LLFSPDSIDQRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLA 3420
LLFSPDSIDQRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLA
Sbjct: 1081 LLFSPDSIDQRNVDGLSGCKLSVFLEERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLA 1140
Query: 3421 ERAAQLGIRFLNNISRXXXXXXXXXXDNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRT 3600
ERAAQLGIRFLNNISR DNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRT
Sbjct: 1141 ERAAQLGIRFLNNISRTPSPTTTNNSDNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRT 1200
Query: 3601 HASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAG 3780
HASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAG
Sbjct: 1201 HASGVHVGGRIVLNAWRLIRGEVKLNMYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAG 1260
Query: 3781 ARYRCIEYVIRRANLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLA 3960
ARYRCIEYVIRRANLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLA
Sbjct: 1261 ARYRCIEYVIRRANLNLEIMSQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLA 1320
Query: 3961 HTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFS 4140
HTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFS
Sbjct: 1321 HTQNYLAISPGNQQVASQPAMECVPLVMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFS 1380
Query: 4141 TCLGKLAHLKMNTLGVSSYSLDLDVLQDLNQILQTPNSVMYVPPEVRRGILPRLLEEILS 4320
TCLGKLAHLKMNTLGVSSYSLDLDVLQDLNQILQTPNSVMYVPPEVRRGILPRLLEEILS
Sbjct: 1381 TCLGKLAHLKMNTLGVSSYSLDLDVLQDLNQILQTPNSVMYVPPEVRRGILPRLLEEILS 1440
Query: 4321 TRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQ 4500
TRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQ
Sbjct: 1441 TRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQ 1500
Query: 4501 CGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEMNPH 4680
CGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEMNPH
Sbjct: 1501 CGRSTLEKAISFVNANDNWNARVVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEMNPH 1560
Query: 4681 PVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAKTMEQSL 4860
PVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAKTMEQSL
Sbjct: 1561 PVTLKMEKVYHPCFLLTKKRYVGYSYESPNQREPIFDAKGIETVRRDTCEAVAKTMEQSL 1620
Query: 4861 RLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAIVAT 5040
RLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAIVAT
Sbjct: 1621 RLFFEQKNISKVKSYLYRQWKRILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAIVAT 1680
Query: 5041 KSMKADPRTEPRYAERVPYVVIHGEPGARXXXXXXXXXXXXXXXTPYRLNDLYYINKQII 5220
KSMKADPRTEPRYAERVPYVVIHGEPGAR TPYRLNDLYYINKQII
Sbjct: 1681 KSMKADPRTEPRYAERVPYVVIHGEPGARLVDMVVDPLVLLDVDTPYRLNDLYYINKQII 1740
Query: 5221 PALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILCGEVV 5400
PALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILCGEVV
Sbjct: 1741 PALQRVFGLVGADLNQWFLEMPRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILCGEVV 1800
Query: 5401 QESAQLCNRCLQNKSAAAATIVWKTSKLEREMQHLATV 5514
QESAQLCNRCLQNKSAAAATIVWKTSKLEREMQHLAT+
Sbjct: 1801 QESAQLCNRCLQNKSAAAATIVWKTSKLEREMQHLATI 1838
>dbj|BAC16650.1| putative DNA-directed DNA polymerase homolog [Oryza sativa (japonica
cultivar-group)]
Length = 1825
Score = 1114 bits (2882), Expect = 0.0
Identities = 605/1038 (58%), Positives = 739/1038 (70%), Gaps = 27/1038 (2%)
Frame = +1
Query: 2476 LTLSKKPPSLDCLSAGLQDSAHSHEIHAREKQHDEYEGNSNDIPFF--PLEDNKEEKKHF 2649
+T ++KPP + + L+ S+ E+ K G ++ PFF E+NK+ +
Sbjct: 681 MTFARKPPMKNEVLC-LEGSSAGSELPQSSKL-----GFADIPPFFNQTAEENKQNESFQ 734
Query: 2650 FQGTS---LGIPLHHLNDGSNLYLLTPAFSPPSVDSVLQWISNDKGDSNIDSEKQPLRDN 2820
G+S LG+P H NDGS LYLLT AFSPPS +V QW++ ++
Sbjct: 735 RMGSSWDTLGVPTHFQNDGSALYLLTHAFSPPSTVAVGQWLTQQSCSVSVSGI------G 788
Query: 2821 HNDRGASFTDLASASNVVSVSEHVEQHNNLFVNSESNAYTESEIDLKPKGTFL---NLNL 2991
H++ G + +N ++S ++ + + S E I P T + +L+
Sbjct: 789 HSNYGEKVSVDQEGANNSTLSPYMGGPALMDDSPASKMALEHSITTFPDDTVMIEPDLSN 848
Query: 2992 QASVS----QELSQISGPDGKSGPTPLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLR 3159
Q + + SQISG D K TPLSQ+GF DPAS+G GQQLTI+SIEV ESRG+LR
Sbjct: 849 QEIKNLADWHDFSQISGGDEKDKLTPLSQIGFCDPASIGGGQQLTIISIEVITESRGELR 908
Query: 3160 PDPRFDSVNVIALVVQNDDSFVAEVFVLLF-SPDSIDQRNVDGLSGCKLSVFLEERQLFR 3336
PDPRFD++N ++L V++D EV VL+ + DS +RN+DG+SGC ++VF ER+L
Sbjct: 909 PDPRFDAINAVSLAVEDDADNTIEVHVLIRGNNDSSHRRNLDGVSGCDVNVFPGERELLN 968
Query: 3337 YFIETLCKWDPDVLLGWDIQGGSIGFLAERAAQLGIRFLNNISRXXXXXXXXXXDNKRKL 3516
+ I +C DPD+++GW+IQ GS+GFLAERAA LGI L ISR N
Sbjct: 969 HLINAICSIDPDIIVGWEIQLGSLGFLAERAAHLGIGLLKRISRTPPHQMKHPPMNPVDE 1028
Query: 3517 GNNLLPDPLVANPAQVEEVVIEDEWGRTHASGVHVGGRIVLNAWRLIRGEVKLNMYTIEA 3696
+ LP A+ V + E+ W HASG+HV GRI+LN WRL+R EVKLN Y++EA
Sbjct: 1029 SSQELPGASSAD--DVIDDASENNWSHAHASGIHVDGRIILNLWRLMRAEVKLNNYSLEA 1086
Query: 3697 VSEAVLRQKVPSIPYKVLTEWFSSGPAGARYRCIEYVIRRANLNLEIMSQLDMINRTSEL 3876
V+ VLR+KVP +P K+L WF++G RYRCIEYV +R++LNLEI++QLD++NRTSEL
Sbjct: 1087 VANEVLRRKVPLVPTKILNRWFATGSGRGRYRCIEYVNKRSSLNLEILNQLDLVNRTSEL 1146
Query: 3877 ARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECVPLVMEPES 4056
ARVFGIDFFSVLSRGSQ+RVESMLLRL HTQNYLAISPGNQQVASQPAMEC+PLVMEPES
Sbjct: 1147 ARVFGIDFFSVLSRGSQFRVESMLLRLVHTQNYLAISPGNQQVASQPAMECLPLVMEPES 1206
Query: 4057 AFYDDPVIVLDFQSLYPSMIIAYNLCFSTCLGKLAHLKMNTLGVSSYSLDLDVLQDL-NQ 4233
AFY DPV+VLDFQSLYPSMIIAYNLC+STCLGK+ K + LGVSSYS D + DL NQ
Sbjct: 1207 AFYSDPVVVLDFQSLYPSMIIAYNLCYSTCLGKVFPSKSSVLGVSSYSADPQKIADLKNQ 1266
Query: 4234 ILQTPNSVMYVPPEVRRGILPRLLEEILSTRIMVKKAMKKLTPSEAVLHRIFNARQLALK 4413
+L TPN V+YV PEVR+G+LPRLLEEILSTRIMVKKAMKKL+ S+ VL RIFNARQLALK
Sbjct: 1267 LLLTPNGVLYVQPEVRKGVLPRLLEEILSTRIMVKKAMKKLSASQKVLQRIFNARQLALK 1326
Query: 4414 LIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNANDNWNARVVYGDTDSM 4593
LIANVTYGYTAAGFSGRMPCAE+ADSIVQCGR TLE AISFVN + W ARVVYGDTD
Sbjct: 1327 LIANVTYGYTAAGFSGRMPCAEIADSIVQCGRRTLETAISFVNQHPLWKARVVYGDTDR- 1385
Query: 4594 FVLLKGRTVKEAFVVGQEIASAITEMNPHPVTLKMEKVYHPCFLLTKKRYVGYSYESPNQ 4773
+EAF +G+EIAS+IT MNP PVTLK EKVYHPCFLLTKKRYVGYSYESP Q
Sbjct: 1386 ---------EEAFRIGKEIASSITAMNPDPVTLKFEKVYHPCFLLTKKRYVGYSYESPEQ 1436
Query: 4774 REPIFDAKGIETVRRDTCEAVAKTMEQSLRLFFEQKNISKVKSYLYRQWKRILSGRVSLQ 4953
+EPIFDAKGIETVRRDTC AVAK +EQS+R+ FE+++++KV+SYL RQW RILSG++S+Q
Sbjct: 1437 KEPIFDAKGIETVRRDTCPAVAKILEQSIRIMFEEQDLAKVRSYLERQWTRILSGKISIQ 1496
Query: 4954 DFIFAKEVRLGTYSTRDSSLLPPAAIVATKSMKADPRTEPRYAERVPYVVIHGEPGARXX 5133
DF+FAKEVRLGTYS R SS LPPAAIVATK++ +DPR EPRY ERVPYVVIHGEPGAR
Sbjct: 1497 DFVFAKEVRLGTYSARASS-LPPAAIVATKAILSDPRAEPRYGERVPYVVIHGEPGARLV 1555
Query: 5134 XXXXXXXXXXXXXTPYRLNDLYYINKQIIPALQRVFGLVGADLNQWFLEMPRLTRSSLGQ 5313
+PYRLN LYYI KQIIPALQRVFGLVGADLN+WF EMPR R +L +
Sbjct: 1556 DMVIDPYGLLEVGSPYRLNALYYITKQIIPALQRVFGLVGADLNKWFNEMPRPIRETLAK 1615
Query: 5314 RP------------LNSKNSHK-TRIDYFYLSKHCILCGEVVQESAQLCNRCLQNKSAAA 5454
R LN K K +RID +Y+S HCI+CGE++Q S CN CL+N++
Sbjct: 1616 RQSASGHGSFSRLGLNKKGVGKGSRIDTYYMSSHCIICGEIIQGSDTFCNNCLRNEAVVG 1675
Query: 5455 ATIVWKTSKLEREMQHLA 5508
+ +TSKLERE+QHLA
Sbjct: 1676 TIVAGRTSKLEREIQHLA 1693
Score = 247 bits (631), Expect = 1e-63
Identities = 213/710 (30%), Positives = 320/710 (45%), Gaps = 43/710 (6%)
Frame = +1
Query: 16 SGSNVFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTCLHIHR 195
+ S V S+RIVS+DYYMA P+PG++ YS F G EV EVPVIRIYGSTPAGQKTCLHIHR
Sbjct: 13 TASPVLSVRIVSLDYYMAPPLPGFDFSYSHFHGGEVEEVPVIRIYGSTPAGQKTCLHIHR 72
Query: 196 ALPYLYIPCSEIPLEHHKGVDGSTXXXXXXXXXXXXXXGNAASKRQHIHDCEIVRAKKFY 375
LP+LY+PC E L H G++ A R
Sbjct: 73 VLPFLYVPCKEDLL--HNVEKGNSFISGLLSDLEKALQDGAVLNR--------------- 115
Query: 376 GYHSTEEAFVKIYLYPYSSYHPPDXXXXXXXXXXXXXXXXXXQPYESHIPFILQFLVDYN 555
PY S+ PY H F++ + N
Sbjct: 116 ------------VFQPYESH----------------------IPYLLH--FLIDY----N 135
Query: 556 LYGMGHVHISKMKFRSPVPHHFRPR-----RFDLDDCPGQRI--DEVAITKANSSAAASV 714
LYGMG+VH++ KFR P+P F P+ + D G ++ D VAI K +++V
Sbjct: 136 LYGMGYVHVTDFKFRPPLPDDFHPKSSLHSKVDCSTESGHKVHPDNVAIRKPTIWISSTV 195
Query: 715 SFPVWSLSTIPGQWM----WNLSEESDTPLXXXXXXXXXXXXXXXLCELEGDATSSDILN 882
+ S+ M WN++ + + LE D+ ILN
Sbjct: 196 PHSLILASSATSHCMEGTNWNVTNRHSSLM------------------LEADSRIEGILN 237
Query: 883 QQFKMYNSLSQAQSDTNMVQSLVAIWEEEYERTGVHDAPIPPDPGKPSAADVLQTMSDYV 1062
+++KMY SLSQA +D+ +V+SL++IW EE E + + P D G+P VL++ +
Sbjct: 238 EKYKMYTSLSQATADSKIVRSLLSIW-EELEHLRLLEEAKPVDMGRPLRDSVLRSFLHGI 296
Query: 1063 GFGNMLKEMLNKVELSPPGMKPTAVSSAGPDMHAKPEITD-LQALNHMVGTC-------- 1215
+ L + K E+S + P M ++ + L++LN ++GT
Sbjct: 297 KYETALSMLCPKEEVSYHRV---------PTMEESEKLEECLKSLNDIIGTITFSQNDYC 347
Query: 1216 ----SEFPASEQ----------LSPLGEKSEEASMENDEYMKTPTDR-DTPAQIQDAEAL 1350
S+ A Q L P E + + + + +T + + ++ DAEAL
Sbjct: 348 SIIDSDISAGTQQENQITNVLCLEPSEEGNTQCPVSSSAAQRTSSQLFEEHEKLVDAEAL 407
Query: 1351 GLFKWFASSQAAEDINSDDEILRETILSPLLPLASINKVLEMASTDYVSQSQKECQDILD 1530
GL W ASSQAAE+ +DDE++ E ILSPL SI LE A D+ SQ+ECQDILD
Sbjct: 408 GLLSWLASSQAAEEPTTDDELVNEAILSPLFSKKSIAVALESAQLDFDGASQQECQDILD 467
Query: 1531 SQENLPDFGSSTKRALPSNPDSQNLRTSSDKQSLEIEVASDVPD---SSTSNGASENSFR 1701
S P G P+ Q SS + +++ +P SS N
Sbjct: 468 SIG--PVIGE-------EQPNDQMSYRSSVRLGESSSLSNSIPQIDGSSDENKEVPQEDG 518
Query: 1702 RYRKSDLHTSEVMEYKN-RSFSKSNKPSNS--VWGPLPFTLTKNLQKDFDSTNASDKLGL 1872
+Y K D + + Y + +S SK++K + +WG LP ++ K + D ++ +
Sbjct: 519 KY-KIDRKRAGLPSYSSPQSSSKASKRGGNELLWGSLPLSIKKRSDLNADG-HSGGAMPT 576
Query: 1873 TKI--SSYPMNEMTDNYIVPVKEHQADVCNTIDRNVLAGCSLRDLMRKKR 2016
K+ +S+ +++ P + T + + L S+RDLMR++R
Sbjct: 577 EKVLSASFMSGTGKNSHANPDNTERGSSSPTGEHDPLCD-SVRDLMRRRR 625
>sp|Q61493|DPOZ_MOUSE DNA polymerase zeta catalytic subunit (Seizure related protein
4)|gi|7513629|pir||T17202 DNA-directed DNA polymerase (EC
2.7.7.7) zeta chain - mouse|gi|4079831|gb|AAC98785.1| DNA
polymerase zeta catalytic subunit [Mus musculus]
Length = 3122
Score = 673 bits (1736), Expect = 0.0
Identities = 369/857 (43%), Positives = 533/857 (62%), Gaps = 21/857 (2%)
Frame = +1
Query: 3007 QELSQISGPD-GKSGPTPLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSV 3183
+E SQI GP + +S ++ ++ Q LT++S+E+HA +R DL+PDP FD +
Sbjct: 2254 KETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQPDPEFDPI 2313
Query: 3184 NVIALVVQND----DSFVAEV--FVLLFSPDSIDQRNV---------DGLSGCKLSVFLE 3318
+ + +D D+ E+ +++ ++ +++ G++G +++ +
Sbjct: 2314 CALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRSQTPLLIRSGITGLEVTYAAD 2373
Query: 3319 ERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLAERAAQLGIRFLNNISRXXXXXXXXXX 3498
E+ LF+ + ++DPD+LLG++IQ S G+L +RAA L + ISR
Sbjct: 2374 EKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISR---------- 2423
Query: 3499 DNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRTHASGVHVGGRIVLNAWRLIRGEVKLN 3678
+PD + N E D++G S +++ GRI LN WR++R EV L
Sbjct: 2424 ----------VPDDKIENRFAAER----DDYGSDTMSEINIVGRITLNLWRIMRNEVGLT 2469
Query: 3679 MYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAGARYRCIEYVIRRANLNLEIMSQLDMI 3858
YT E VS VL Q+ P ++VL++WF + R++ +++ + R NL+++ QLD+I
Sbjct: 2470 NYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLI 2529
Query: 3859 NRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECVPL 4038
+TSE+AR+FGI F VL+RGSQYRVESM+LR+A NY+ ++P QQ + A +CVPL
Sbjct: 2530 GKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQMRAPQCVPL 2589
Query: 4039 VMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFSTCLGKLAHLKMNT---LGVSSYSLDL 4209
+MEPES FY + V+VLDFQSLYPS++IAYN CFSTCLG + +L G +S +
Sbjct: 2590 IMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPP 2649
Query: 4210 DVLQDL-NQILQTPNSVMYVPPEVRRGILPRLLEEILSTRIMVKKAMKKLTPSEAVLHRI 4386
D+L + + + +PN V +V P VR+G+LPR+LEEIL TR+MVK++MK A L R+
Sbjct: 2650 DLLYQIRHDVTVSPNGVAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYKQDRA-LSRM 2708
Query: 4387 FNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNANDNWNAR 4566
NARQL LKLIANVT+GYTAA FSGRMPC E+ DSIV R TLE+AI VN W AR
Sbjct: 2709 LNARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGAR 2768
Query: 4567 VVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEMNPHPVTLKMEKVYHPCFLLTKKRYV 4746
VVYGDTDSMFVLLKG T +++F +GQEIA A+T NP PV LK EKVY PC L TKKRYV
Sbjct: 2769 VVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPRPVKLKFEKVYLPCVLQTKKRYV 2828
Query: 4747 GYSYESPNQREPIFDAKGIETVRRDTCEAVAKTMEQSLRLFFEQKNISKVKSYLYRQWKR 4926
GY YE+ +Q+EP+FDAKGIETVRRD+C AV+K +E+SL+L FE ++IS +K Y++RQ +
Sbjct: 2829 GYMYETLDQKEPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVHRQCMK 2888
Query: 4927 ILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAIVATKSMKA-DPRTEPRYAERVPYVV 5103
++ G+ S+QDFIFAKE R G++S R + +P A+ T+ M A D R+EPR ERVPYV+
Sbjct: 2889 LVEGKASIQDFIFAKEYR-GSFSYRPGACVP--ALELTRKMLAYDRRSEPRVGERVPYVI 2945
Query: 5104 IHGEPGARXXXXXXXXXXXXXXXTPYRLNDLYYINKQIIPALQRVFGLVGADLNQWFLEM 5283
I+G PG T RLN YYI KQI+P L R+F L+G D+ W+ E+
Sbjct: 2946 IYGTPGLPLIQLIRRPAEVLQDPT-LRLNATYYITKQILPPLARIFSLIGIDVFSWYQEL 3004
Query: 5284 PRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILCGEVVQESAQLCNRCLQNKSAAAATI 5463
PR+ +++ R + K I ++ + HC +C ++ Q +C++C A +
Sbjct: 3005 PRIQKATSSSR--SELEGRKGTISQYFTTLHCPVCDDLTQHG--ICSKCRSQPQHVAIIL 3060
Query: 5464 VWKTSKLEREMQHLATV 5514
+ +LER+ + L +
Sbjct: 3061 NQEIRELERKQEQLIKI 3077
Score = 157 bits (397), Expect = 2e-36
Identities = 107/317 (33%), Positives = 149/317 (46%)
Frame = +1
Query: 28 VFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTCLHIHRALPY 207
+FS+RIV+ DYYMASP+PG + C S V +VPV+R++G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLPGLDTCQSPLTQLPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 208 LYIPCSEIPLEHHKGVDGSTXXXXXXXXXXXXXXGNAASKRQHIHDCEIVRAKKFYGYHS 387
LY+P + + + GN +S QH+ +V FYGYH
Sbjct: 61 LYVPYDGYGQQPESYL---SQMAFSIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHE 117
Query: 388 TEEAFVKIYLYPYSSYHPPDXXXXXXXXXXXXXXXXXXQPYESHIPFILQFLVDYNLYGM 567
E F+KIYL Y+P QP+E+HIP++LQ +DYNLYGM
Sbjct: 118 KERHFMKIYL-----YNPAMVKRICELLQSGAIMNKCYQPHEAHIPYLLQLFIDYNLYGM 172
Query: 568 GHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSFPVWSLSTIP 747
++++ +KFR R+ + G +++ NS A W IP
Sbjct: 173 NLINLAAVKFRK------ARRKGNASHATGLFKHQLS---GNSPAGTLFR---WEEDEIP 220
Query: 748 GQWMWNLSEESDTPLXXXXXXXXXXXXXXXLCELEGDATSSDILNQQFKMYNSLSQAQSD 927
+L E PL CELE DA ++DILN+ +AQ
Sbjct: 221 S----SLLLEGVEPLST--------------CELEVDAVAADILNRLD------IEAQIG 256
Query: 928 TNMVQSLVAIWEEEYER 978
N L AIWE+E +R
Sbjct: 257 GN--PGLQAIWEDEKQR 271
>dbj|BAA90768.1| DNA polymerase [Mus musculus]
Length = 3122
Score = 673 bits (1736), Expect = 0.0
Identities = 369/857 (43%), Positives = 533/857 (62%), Gaps = 21/857 (2%)
Frame = +1
Query: 3007 QELSQISGPD-GKSGPTPLSQMGFRDPASMGAGQQLTILSIEVHAESRGDLRPDPRFDSV 3183
+E SQI GP + +S ++ ++ Q LT++S+E+HA +R DL+PDP FD +
Sbjct: 2254 KETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQPDPEFDPI 2313
Query: 3184 NVIALVVQND----DSFVAEV--FVLLFSPDSIDQRNV---------DGLSGCKLSVFLE 3318
+ + +D D+ E+ +++ ++ +++ G++G +++ +
Sbjct: 2314 CALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRSQTPLLIRSGITGLEVTYAAD 2373
Query: 3319 ERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLAERAAQLGIRFLNNISRXXXXXXXXXX 3498
E+ LF+ + ++DPD+LLG++IQ S G+L +RAA L + ISR
Sbjct: 2374 EKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISR---------- 2423
Query: 3499 DNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRTHASGVHVGGRIVLNAWRLIRGEVKLN 3678
+PD + N E D++G S +++ GRI LN WR++R EV L
Sbjct: 2424 ----------VPDDKIENRFAAER----DDYGSDTMSEINIVGRITLNLWRIMRNEVGLT 2469
Query: 3679 MYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAGARYRCIEYVIRRANLNLEIMSQLDMI 3858
YT E VS VL Q+ P ++VL++WF + R++ +++ + R NL+++ QLD+I
Sbjct: 2470 NYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLI 2529
Query: 3859 NRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECVPL 4038
+TSE+AR+FGI F VL+RGSQYRVESM+LR+A NY+ ++P QQ + A +CVPL
Sbjct: 2530 GKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQMRAPQCVPL 2589
Query: 4039 VMEPESAFYDDPVIVLDFQSLYPSMIIAYNLCFSTCLGKLAHLKMNT---LGVSSYSLDL 4209
+MEPES FY + V+VLDFQSLYPS++IAYN CFSTCLG + +L G +S +
Sbjct: 2590 IMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPP 2649
Query: 4210 DVLQDL-NQILQTPNSVMYVPPEVRRGILPRLLEEILSTRIMVKKAMKKLTPSEAVLHRI 4386
D+L + + + +PN V +V P VR+G+LPR+LEEIL TR+MVK++MK A L R+
Sbjct: 2650 DLLYQIRHDVTVSPNGVAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYKQDRA-LSRM 2708
Query: 4387 FNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNANDNWNAR 4566
NARQL LKLIANVT+GYTAA FSGRMPC E+ DSIV R TLE+AI VN W AR
Sbjct: 2709 LNARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGAR 2768
Query: 4567 VVYGDTDSMFVLLKGRTVKEAFVVGQEIASAITEMNPHPVTLKMEKVYHPCFLLTKKRYV 4746
VVYGDTDSMFVLLKG T +++F +GQEIA A+T NP PV LK EKVY PC L TKKRYV
Sbjct: 2769 VVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPRPVKLKFEKVYLPCVLQTKKRYV 2828
Query: 4747 GYSYESPNQREPIFDAKGIETVRRDTCEAVAKTMEQSLRLFFEQKNISKVKSYLYRQWKR 4926
GY YE+ +Q+EP+FDAKGIETVRRD+C AV+K +E+SL+L FE ++IS +K Y++RQ +
Sbjct: 2829 GYMYETLDQKEPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVHRQCMK 2888
Query: 4927 ILSGRVSLQDFIFAKEVRLGTYSTRDSSLLPPAAIVATKSMKA-DPRTEPRYAERVPYVV 5103
++ G+ S+QDFIFAKE R G++S R + +P A+ T+ M A D R+EPR ERVPYV+
Sbjct: 2889 LVEGKASIQDFIFAKEYR-GSFSYRPGACVP--ALELTRKMLAYDRRSEPRVGERVPYVI 2945
Query: 5104 IHGEPGARXXXXXXXXXXXXXXXTPYRLNDLYYINKQIIPALQRVFGLVGADLNQWFLEM 5283
I+G PG T RLN YYI KQI+P L R+F L+G D+ W+ E+
Sbjct: 2946 IYGTPGLPLIQLIRRPAEVLQDPT-LRLNATYYITKQILPPLARIFSLIGIDVFSWYQEL 3004
Query: 5284 PRLTRSSLGQRPLNSKNSHKTRIDYFYLSKHCILCGEVVQESAQLCNRCLQNKSAAAATI 5463
PR+ +++ R + K I ++ + HC +C ++ Q +C++C A +
Sbjct: 3005 PRIQKATSSSR--SELEGRKGTISQYFTTLHCPVCDDLTQHG--ICSKCRSQPQHVAIIL 3060
Query: 5464 VWKTSKLEREMQHLATV 5514
+ +LER+ + L +
Sbjct: 3061 NQEIRELERKQEQLIKI 3077
Score = 155 bits (391), Expect = 9e-36
Identities = 106/317 (33%), Positives = 148/317 (46%)
Frame = +1
Query: 28 VFSLRIVSIDYYMASPIPGYNICYSSFQGSEVNEVPVIRIYGSTPAGQKTCLHIHRALPY 207
+FS+RIV+ DYYMASP+PG + C S V +VPV+R++G+TPAGQKTCLH+H PY
Sbjct: 1 MFSVRIVTADYYMASPLPGLDTCQSPLTQLPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 208 LYIPCSEIPLEHHKGVDGSTXXXXXXXXXXXXXXGNAASKRQHIHDCEIVRAKKFYGYHS 387
LY+P + + + N +S QH+ +V FYGYH
Sbjct: 61 LYVPYDGYGQQPESYL---SQMAFSIDRALNVALANPSSTAQHVFKVSLVSGMPFYGYHE 117
Query: 388 TEEAFVKIYLYPYSSYHPPDXXXXXXXXXXXXXXXXXXQPYESHIPFILQFLVDYNLYGM 567
E F+KIYL Y+P QP+E+HIP++LQ +DYNLYGM
Sbjct: 118 KERHFMKIYL-----YNPAMVKRICELLQSGAIMNKCYQPHEAHIPYLLQLFIDYNLYGM 172
Query: 568 GHVHISKMKFRSPVPHHFRPRRFDLDDCPGQRIDEVAITKANSSAAASVSFPVWSLSTIP 747
++++ +KFR R+ + G +++ NS A W IP
Sbjct: 173 NLINLAAVKFRK------ARRKGNASHATGLFKHQLS---GNSPAGTLFR---WEEDEIP 220
Query: 748 GQWMWNLSEESDTPLXXXXXXXXXXXXXXXLCELEGDATSSDILNQQFKMYNSLSQAQSD 927
+L E PL CELE DA ++DILN+ +AQ
Sbjct: 221 S----SLLLEGVEPLST--------------CELEVDAVAADILNRLD------IEAQIG 256
Query: 928 TNMVQSLVAIWEEEYER 978
N L AIWE+E +R
Sbjct: 257 GN--PGLQAIWEDEKQR 271
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.316 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 138
effective length of database: 245,524,063
effective search space used: 425493201179
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)