BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g65940.f
(69 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176769.1| hypothetical protein [Arabidopsis thaliana] 47 8e-05
ref|NP_201362.1| Dof zinc finger protein; protein id: At5g6... 31 4.7
dbj|BAA78575.1| Dof zinc finger protein [Oryza sativa] 31 4.7
>ref|NP_176769.1| hypothetical protein [Arabidopsis thaliana]
Length = 22
Score = 47.0 bits (110), Expect = 8e-05
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +1
Query: 1 MHIMVLRQLPSIGTFLKTPLRV 66
MHIMVLRQLPSIGTFLKTPLRV
Sbjct: 1 MHIMVLRQLPSIGTFLKTPLRV 22
>ref|NP_201362.1| Dof zinc finger protein; protein id: At5g65590.1 [Arabidopsis
thaliana]
Length = 316
Score = 31.2 bits (69), Expect = 4.7
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -2
Query: 65 TRSGVLRKVPIDGSCRKT 12
TR G LR VPI G CRKT
Sbjct: 76 TRGGALRNVPIGGGCRKT 93
>dbj|BAA78575.1| Dof zinc finger protein [Oryza sativa]
Length = 282
Score = 31.2 bits (69), Expect = 4.7
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 65 TRSGVLRKVPIDGSCRKT 12
T+ GVLR VP+ G CRKT
Sbjct: 80 TKGGVLRNVPVGGGCRKT 97
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 0
effective length of database: 431,508,457
effective search space used: 10356202968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)