BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01380.f
(252 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C86144 probable MYB family transcription factor [impor... 125 1e-28
pir||A85014 probable myb-like protein [imported] - Arabidop... 75 2e-13
dbj|BAC42674.1| unknown protein [Arabidopsis thaliana] 73 9e-13
pir||E84902 probable MYB family transcription factor [impor... 69 1e-11
ref|NP_200132.1| putative protein; protein id: At5g53200.1 ... 68 3e-11
>pir||C86144 probable MYB family transcription factor [imported] - Arabidopsis
thaliana|gi|9665158|gb|AAF97342.1|AC023628_23 Putative
MYB family transcription factor [Arabidopsis
thaliana]|gi|15223390|ref|NP_171645.1| myb family
transcription factor; protein id: At1g01380.1
[Arabidopsis thaliana]
Length = 83
Score = 125 bits (314), Expect = 1e-28
Identities = 62/83 (74%), Positives = 62/83 (74%)
Frame = +1
Query: 1 MNTQRKSKHLKTNPTIVAXXXXXXXXXXXXXXXXXXXXXDLICRMYKLVGERWDLIAGRI 180
MNTQRKSKHLKTNPTIVA DLICRMYKLVGERWDLIAGRI
Sbjct: 1 MNTQRKSKHLKTNPTIVASSSEEVSSLEWEEIAMAQEEEDLICRMYKLVGERWDLIAGRI 60
Query: 181 PGRTAEEIERFWVMKNHRRSQLR 249
PGRTAEEIERFWVMKNHRRSQLR
Sbjct: 61 PGRTAEEIERFWVMKNHRRSQLR 83
>pir||A85014 probable myb-like protein [imported] - Arabidopsis
thaliana|gi|7267603|emb|CAB80915.1| putative myb-like
protein [Arabidopsis
thaliana]|gi|15234054|ref|NP_192015.1| myb family
transcription factor; protein id: At4g01060.1
[Arabidopsis thaliana]
Length = 75
Score = 75.5 bits (184), Expect = 2e-13
Identities = 39/76 (51%), Positives = 47/76 (61%)
Frame = +1
Query: 1 MNTQRKSKHLKTNPTIVAXXXXXXXXXXXXXXXXXXXXXDLICRMYKLVGERWDLIAGRI 180
M+ R++K KTN +IV DL+ RM+KLVG+RW+LIAGRI
Sbjct: 1 MDNHRRTKQPKTN-SIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRI 59
Query: 181 PGRTAEEIERFWVMKN 228
PGRTA EIERFWVMKN
Sbjct: 60 PGRTAGEIERFWVMKN 75
>dbj|BAC42674.1| unknown protein [Arabidopsis thaliana]
Length = 77
Score = 73.2 bits (178), Expect = 9e-13
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +1
Query: 1 MNTQRKSKHLKTNPTIVAXXXXXXXXXXX-XXXXXXXXXXDLICRMYKLVGERWDLIAGR 177
M+ R++K KTN + + DL+ RM+KLVG+RW+LIAGR
Sbjct: 1 MDNHRRTKQPKTNSIVTSSSEGTEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGR 60
Query: 178 IPGRTAEEIERFWVMKN 228
IPGRTA EIERFWVMKN
Sbjct: 61 IPGRTAGEIERFWVMKN 77
>pir||E84902 probable MYB family transcription factor [imported] - Arabidopsis
thaliana|gi|4559383|gb|AAD23043.1| putative MYB family
transcription factor [Arabidopsis
thaliana]|gi|18491257|gb|AAL69453.1| At2g46410/F11C10.10
[Arabidopsis thaliana]|gi|2346966|dbj|BAA21917.1| CPC
[Arabidopsis thaliana]|gi|15225977|ref|NP_182164.1|
myb-related protein CAPRICE (CPC); protein id:
At2g46410.1, supported by cDNA: gi_18491256, supported
by cDNA: gi_2346965 [Arabidopsis thaliana]
Length = 94
Score = 69.3 bits (168), Expect = 1e-11
Identities = 30/37 (81%), Positives = 35/37 (94%)
Frame = +1
Query: 118 DLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 228
DLI RMYKLVG+RW+LIAGRIPGRT EEIER+W+MK+
Sbjct: 44 DLISRMYKLVGDRWELIAGRIPGRTPEEIERYWLMKH 80
>ref|NP_200132.1| putative protein; protein id: At5g53200.1 [Arabidopsis
thaliana]|gi|9758001|dbj|BAB08423.1| contains similarity
to MYB family transcription factor~gene_id:MFH8.14
[Arabidopsis thaliana]
Length = 105
Score = 68.2 bits (165), Expect = 3e-11
Identities = 28/37 (75%), Positives = 34/37 (91%)
Frame = +1
Query: 118 DLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 228
DLI RMY+LVG+RWDLIAGR+PGR EEIER+W+M+N
Sbjct: 38 DLIFRMYRLVGDRWDLIAGRVPGRQPEEIERYWIMRN 74
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 59
effective length of database: 351,993,390
effective search space used: 8447841360
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)