BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At1g01380.f
         (252 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||C86144  probable MYB family transcription factor [impor...   125   1e-28
pir||A85014  probable myb-like protein [imported] - Arabidop...    75   2e-13
dbj|BAC42674.1|  unknown protein [Arabidopsis thaliana]            73   9e-13
pir||E84902  probable MYB family transcription factor [impor...    69   1e-11
ref|NP_200132.1|  putative protein; protein id: At5g53200.1 ...    68   3e-11
>pir||C86144 probable MYB family transcription factor [imported] - Arabidopsis
           thaliana|gi|9665158|gb|AAF97342.1|AC023628_23 Putative
           MYB family transcription factor [Arabidopsis
           thaliana]|gi|15223390|ref|NP_171645.1| myb family
           transcription factor; protein id: At1g01380.1
           [Arabidopsis thaliana]
          Length = 83

 Score =  125 bits (314), Expect = 1e-28
 Identities = 62/83 (74%), Positives = 62/83 (74%)
 Frame = +1

Query: 1   MNTQRKSKHLKTNPTIVAXXXXXXXXXXXXXXXXXXXXXDLICRMYKLVGERWDLIAGRI 180
           MNTQRKSKHLKTNPTIVA                     DLICRMYKLVGERWDLIAGRI
Sbjct: 1   MNTQRKSKHLKTNPTIVASSSEEVSSLEWEEIAMAQEEEDLICRMYKLVGERWDLIAGRI 60

Query: 181 PGRTAEEIERFWVMKNHRRSQLR 249
           PGRTAEEIERFWVMKNHRRSQLR
Sbjct: 61  PGRTAEEIERFWVMKNHRRSQLR 83
>pir||A85014 probable myb-like protein [imported] - Arabidopsis
           thaliana|gi|7267603|emb|CAB80915.1| putative myb-like
           protein [Arabidopsis
           thaliana]|gi|15234054|ref|NP_192015.1| myb family
           transcription factor; protein id: At4g01060.1
           [Arabidopsis thaliana]
          Length = 75

 Score = 75.5 bits (184), Expect = 2e-13
 Identities = 39/76 (51%), Positives = 47/76 (61%)
 Frame = +1

Query: 1   MNTQRKSKHLKTNPTIVAXXXXXXXXXXXXXXXXXXXXXDLICRMYKLVGERWDLIAGRI 180
           M+  R++K  KTN +IV                      DL+ RM+KLVG+RW+LIAGRI
Sbjct: 1   MDNHRRTKQPKTN-SIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRI 59

Query: 181 PGRTAEEIERFWVMKN 228
           PGRTA EIERFWVMKN
Sbjct: 60  PGRTAGEIERFWVMKN 75
>dbj|BAC42674.1| unknown protein [Arabidopsis thaliana]
          Length = 77

 Score = 73.2 bits (178), Expect = 9e-13
 Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
 Frame = +1

Query: 1   MNTQRKSKHLKTNPTIVAXXXXXXXXXXX-XXXXXXXXXXDLICRMYKLVGERWDLIAGR 177
           M+  R++K  KTN  + +                      DL+ RM+KLVG+RW+LIAGR
Sbjct: 1   MDNHRRTKQPKTNSIVTSSSEGTEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGR 60

Query: 178 IPGRTAEEIERFWVMKN 228
           IPGRTA EIERFWVMKN
Sbjct: 61  IPGRTAGEIERFWVMKN 77
>pir||E84902 probable MYB family transcription factor [imported] - Arabidopsis
           thaliana|gi|4559383|gb|AAD23043.1| putative MYB family
           transcription factor [Arabidopsis
           thaliana]|gi|18491257|gb|AAL69453.1| At2g46410/F11C10.10
           [Arabidopsis thaliana]|gi|2346966|dbj|BAA21917.1| CPC
           [Arabidopsis thaliana]|gi|15225977|ref|NP_182164.1|
           myb-related protein CAPRICE (CPC); protein id:
           At2g46410.1, supported by cDNA: gi_18491256, supported
           by cDNA: gi_2346965 [Arabidopsis thaliana]
          Length = 94

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 30/37 (81%), Positives = 35/37 (94%)
 Frame = +1

Query: 118 DLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 228
           DLI RMYKLVG+RW+LIAGRIPGRT EEIER+W+MK+
Sbjct: 44  DLISRMYKLVGDRWELIAGRIPGRTPEEIERYWLMKH 80
>ref|NP_200132.1| putative protein; protein id: At5g53200.1 [Arabidopsis
           thaliana]|gi|9758001|dbj|BAB08423.1| contains similarity
           to MYB family transcription factor~gene_id:MFH8.14
           [Arabidopsis thaliana]
          Length = 105

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = +1

Query: 118 DLICRMYKLVGERWDLIAGRIPGRTAEEIERFWVMKN 228
           DLI RMY+LVG+RWDLIAGR+PGR  EEIER+W+M+N
Sbjct: 38  DLIFRMYRLVGDRWDLIAGRVPGRQPEEIERYWIMRN 74
  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 59
effective length of database: 351,993,390
effective search space used: 8447841360
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results