BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01310.f
(885 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171638.1| pathogenesis related protein, putative; pr... 570 e-162
gb|AAF97329.1|AC023628_10 Similar to pathogenesis-related p... 495 e-139
emb|CAB79433.1| putative pathogenesis-related protein [Arab... 168 1e-40
gb|AAF23290.1|AC016661_15 putative pathogenesis-related pro... 166 5e-40
emb|CAA07474.1| pathogenisis-related protein 1.2 [Triticum ... 164 2e-39
>ref|NP_171638.1| pathogenesis related protein, putative; protein id: At1g01310.1
[Arabidopsis thaliana]
Length = 294
Score = 570 bits (1470), Expect = e-162
Identities = 271/294 (92%), Positives = 271/294 (92%)
Frame = +1
Query: 1 MGKPRSVSPTIFLLVILLVTAGEKTEAKPWWKKVGDSIGNIAGGIRNAVGNYKPVEMGLS 180
MGKPRSVSPTIFLLVILLVTAGEKTEAKPWWKKVGDSIGNIAGGIRNAVGNYKPVEMGLS
Sbjct: 1 MGKPRSVSPTIFLLVILLVTAGEKTEAKPWWKKVGDSIGNIAGGIRNAVGNYKPVEMGLS 60
Query: 181 LKGGFCVRKLLSLNTNVFSEWCIALNDPRAPMYMKIENIPSATSTRLLLSPPSFTGXXXX 360
LKGGFCVRKLLSLNTNVFSEWCIALNDPRAPMYMKIENIPSATSTRLLLSPPSFTG
Sbjct: 61 LKGGFCVRKLLSLNTNVFSEWCIALNDPRAPMYMKIENIPSATSTRLLLSPPSFTGNRFS 120
Query: 361 XXXXXXXXXXXXXXXXXXXEFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDCRL 540
EFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDCRL
Sbjct: 121 FRFRWRRIRRRNRVNRASREFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDCRL 180
Query: 541 VHSNGPYGENIFWAGKNNWSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRDST 720
VHSNGPYGENIFWAGKNNWSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRDST
Sbjct: 181 VHSNGPYGENIFWAGKNNWSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRDST 240
Query: 721 KVGCASVDCSNGGVYAICVYNPPGNYEGENPFGSYDDQIGLARDDPPAVIGGMA 882
KVGCASVDCSNGGVYAICVYNPPGNYEGENPFGSYDDQIGLARDDPPAVIGGMA
Sbjct: 241 KVGCASVDCSNGGVYAICVYNPPGNYEGENPFGSYDDQIGLARDDPPAVIGGMA 294
>gb|AAF97329.1|AC023628_10 Similar to pathogenesis-related proteins [Arabidopsis
thaliana]|gi|25518458|pir||D86143 hypothetical protein
F6F3.11 - Arabidopsis thaliana
Length = 283
Score = 495 bits (1275), Expect = e-139
Identities = 241/296 (81%), Positives = 246/296 (82%), Gaps = 2/296 (0%)
Frame = +1
Query: 1 MGKPRSVSPTIFLLVILLVTAGEKTEAKPWWKKVGDSIGNIAGGIRNAVGNYKPVEMGLS 180
MGKPRSVSPTIFLLVILLVTAGEKTEAKPWWKKVGDSIGNIAGGIRNAVGNYKPVEMGLS
Sbjct: 1 MGKPRSVSPTIFLLVILLVTAGEKTEAKPWWKKVGDSIGNIAGGIRNAVGNYKPVEMGLS 60
Query: 181 LKGGFCVRKLLSLNTNVFSEWC--IALNDPRAPMYMKIENIPSATSTRLLLSPPSFTGXX 354
LKGGFC+ W +N + ++N PSATSTRLLLSPPSFTG
Sbjct: 61 LKGGFCL-------------WSGTAQINHEDSSTKPSVKNSPSATSTRLLLSPPSFTGNR 107
Query: 355 XXXXXXXXXXXXXXXXXXXXXEFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDC 534
EFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDC
Sbjct: 108 FSFRFRWRRIRRRNRVNRASREFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDC 167
Query: 535 RLVHSNGPYGENIFWAGKNNWSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRD 714
RLVHSNGPYGENIFWAGKNNWSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRD
Sbjct: 168 RLVHSNGPYGENIFWAGKNNWSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRD 227
Query: 715 STKVGCASVDCSNGGVYAICVYNPPGNYEGENPFGSYDDQIGLARDDPPAVIGGMA 882
STKVGCASVDCSNGGVYAICVYNPPGNYEGENPFGSYDDQIGLARDDPPAVIGGMA
Sbjct: 228 STKVGCASVDCSNGGVYAICVYNPPGNYEGENPFGSYDDQIGLARDDPPAVIGGMA 283
>emb|CAB79433.1| putative pathogenesis-related protein [Arabidopsis
thaliana]|gi|7442180|pir||T04232 pathogenesis-related
protein homolog F14M19.60 - Arabidopsis
thaliana|gi|26449893|dbj|BAC42068.1| putative
pathogenesis-related protein [Arabidopsis
thaliana]|gi|15235992|ref|NP_194308.1| putative
pathogenesis-related protein; protein id: At4g25780.1
[Arabidopsis thaliana]|gi|4539296|emb|CAB39599.1|
putative pathogenesis-related protein [Arabidopsis
thaliana]
Length = 190
Score = 168 bits (425), Expect = 1e-40
Identities = 77/137 (56%), Positives = 91/137 (66%), Gaps = 4/137 (2%)
Frame = +1
Query: 418 EFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDCRLVHS--NGPY--GENIFWAG 585
+FL HNLVRA EPP WD RL YA+ WANQR GDC L HS NG + GENI+W
Sbjct: 54 QFLFRHNLVRAARFEPPLIWDRRLQNYAQGWANQRRGDCALRHSVSNGEFNLGENIYWGY 113
Query: 586 KNNWSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRDSTKVGCASVDCSNGGVY 765
NWSP D V WA E +FY NTC+ MCGHYTQIVW+ + +VGCA V C NGG++
Sbjct: 114 GANWSPADAVVAWASEKRFYHYGSNTCDAGQMCGHYTQIVWKSTRRVGCARVVCDNGGIF 173
Query: 766 AICVYNPPGNYEGENPF 816
C Y+PPGNY G+ P+
Sbjct: 174 MTCNYDPPGNYIGQKPY 190
>gb|AAF23290.1|AC016661_15 putative pathogenesis-related protein [Arabidopsis
thaliana]|gi|15232719|ref|NP_187570.1| putative
pathogenesis-related protein; protein id: At3g09590.1
[Arabidopsis thaliana]
Length = 186
Score = 166 bits (419), Expect = 5e-40
Identities = 77/135 (57%), Positives = 87/135 (64%), Gaps = 2/135 (1%)
Frame = +1
Query: 418 EFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDCRLVHSNGPYGENIFW-AGKNN 594
EFL AHN R G P WD LA +A WA QR DC ++HS GPYGENIFW K
Sbjct: 52 EFLQAHNDARVSSGVPTLGWDRDLARFADKWAKQRKSDCSMIHSGGPYGENIFWHRRKKT 111
Query: 595 WSPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRDSTKVGCASVDCSNG-GVYAI 771
WSP +V W +E YDVK NTC P MCGHYTQ+VWR++T VGCA V C NG G +
Sbjct: 112 WSPEKVVTRWFEERFNYDVKTNTCAPGKMCGHYTQMVWRETTAVGCARVKCHNGRGYLVV 171
Query: 772 CVYNPPGNYEGENPF 816
C Y+P GNYEGE PF
Sbjct: 172 CEYDPRGNYEGERPF 186
>emb|CAA07474.1| pathogenisis-related protein 1.2 [Triticum aestivum]
Length = 173
Score = 164 bits (415), Expect = 2e-39
Identities = 70/134 (52%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Frame = +1
Query: 418 EFLIAHNLVRARVGEPPFQWDGRLAAYARTWANQRVGDCRLVHSNGPYGENIFWAGKNNW 597
+F+ HN RA G P WD +A +A+ WA QR GDCRL HS GP+GENIFW +W
Sbjct: 31 DFVNLHNRARAVDGVGPVAWDNNVARFAQDWAAQRAGDCRLQHSGGPFGENIFWGSGQSW 90
Query: 598 SPRDIVNVWADEDKFYDVKGNTCEPQHMCGHYTQIVWRDSTKVGCASVDCS-NGGVYAIC 774
+ D V +W DE + Y + NTC+ +CGHYTQ+VWR ST++GCA V C+ N GV+ C
Sbjct: 91 TAADAVKLWVDEKQNYHLDSNTCDAGKVCGHYTQVVWRKSTRIGCARVVCTGNRGVFITC 150
Query: 775 VYNPPGNYEGENPF 816
YNPPGN+ GE PF
Sbjct: 151 NYNPPGNFNGERPF 164
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 122
effective length of database: 267,087,471
effective search space used: 45939045012
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)