BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01290.f
(813 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171636.1| molybdopterin biosynthesis CNX3 protein, p... 529 e-149
emb|CAD40986.1| OSJNBa0072F16.10 [Oryza sativa (japonica cu... 236 4e-61
gb|AAN11896.1| CG33048-PC [Drosophila melanogaster]|gi|2466... 167 2e-40
gb|AAL87446.1| molybdenum cofactor synthesis/low xanthine d... 164 2e-39
gb|AAH27444.1| Unknown (protein for MGC:36285) [Mus musculus] 160 2e-38
>ref|NP_171636.1| molybdopterin biosynthesis CNX3 protein, putative; protein id:
At1g01290.1 [Arabidopsis
thaliana]|gi|662873|emb|CAA88106.1| Cnx3 [Arabidopsis
thaliana]|gi|11278174|pir||T46961 molybdenum cofactor
biosynthesis protein cnx3 [validated] - Arabidopsis
thaliana|gi|9665143|gb|AAF97327.1|AC023628_8
Molybdopterin Biosythesis CNX3 protein [Arabidopsis
thaliana]|gi|2497964|sp|Q39056|CNX3_ARATH Molybdopterin
biosynthesis CNX3 protein (Molybdenum cofactor
biosynthesis enzyme CNX3)
Length = 270
Score = 529 bits (1362), Expect = e-149
Identities = 270/270 (100%), Positives = 270/270 (100%)
Frame = +1
Query: 1 MISTLRRAVFLRRFPAVVSPIKRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPDGP 180
MISTLRRAVFLRRFPAVVSPIKRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPDGP
Sbjct: 1 MISTLRRAVFLRRFPAVVSPIKRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPDGP 60
Query: 181 GTMDFSELKSSKIEPLRSKNIDFRQQIEYHKSTHSSKNDSQAIEQYAKVASDMSKLTHVG 360
GTMDFSELKSSKIEPLRSKNIDFRQQIEYHKSTHSSKNDSQAIEQYAKVASDMSKLTHVG
Sbjct: 61 GTMDFSELKSSKIEPLRSKNIDFRQQIEYHKSTHSSKNDSQAIEQYAKVASDMSKLTHVG 120
Query: 361 IAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGVAKIAGINGAKQ 540
IAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGVAKIAGINGAKQ
Sbjct: 121 IAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGVAKIAGINGAKQ 180
Query: 541 TSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMTAVSVAGLTVYD 720
TSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMTAVSVAGLTVYD
Sbjct: 181 TSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMTAVSVAGLTVYD 240
Query: 721 MCKAASKDISITDVRLERKTGGKSGSWSRL 810
MCKAASKDISITDVRLERKTGGKSGSWSRL
Sbjct: 241 MCKAASKDISITDVRLERKTGGKSGSWSRL 270
>emb|CAD40986.1| OSJNBa0072F16.10 [Oryza sativa (japonica cultivar-group)]
Length = 224
Score = 236 bits (601), Expect = 4e-61
Identities = 131/230 (56%), Positives = 159/230 (68%)
Frame = +1
Query: 118 INELNQEMQSIFGQEPSPDGPGTMDFSELKSSKIEPLRSKNIDFRQQIEYHKSTHSSKND 297
I ELN+EM+S+FG+ PSP S L S+ +P R N D
Sbjct: 29 IAELNKEMESVFGESPSP--------SPLGSTPQQPARPTN---------------GSGD 65
Query: 298 SQAIEQYAKVASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLAN 477
Q + LTH +G+A+MVDVSSK +S R A+A C+V+LG+ FDLV +N
Sbjct: 66 GQPM------------LTHTDSSGQAKMVDVSSKHDSTRVAIATCRVLLGQEAFDLVASN 113
Query: 478 QMGKGDVLGVAKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTG 657
++ KGDVL VAKIAGI GAKQTS+LIPLCHN+ L+HVRVDL LN ED SV IEGEAS +G
Sbjct: 114 KIAKGDVLTVAKIAGITGAKQTSNLIPLCHNLNLSHVRVDLTLNEEDSSVMIEGEASTSG 173
Query: 658 KTGVEMEAMTAVSVAGLTVYDMCKAASKDISITDVRLERKTGGKSGSWSR 807
KTGVEMEAMTAV++AGLTVYDMCKAASK+I ITD+ L+ K+GGKSGSWSR
Sbjct: 174 KTGVEMEAMTAVAIAGLTVYDMCKAASKNICITDICLQHKSGGKSGSWSR 223
>gb|AAN11896.1| CG33048-PC [Drosophila melanogaster]|gi|24662449|ref|NP_536755.2|
CG7858-PC [Drosophila melanogaster]
Length = 565
Score = 167 bits (423), Expect = 2e-40
Identities = 93/175 (53%), Positives = 121/175 (69%)
Frame = +1
Query: 265 YHKSTHSSKNDSQAIEQYAKVASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVIL 444
YH + H+S+ QA + S+LTHV G+AQMVDV +K ++ R A A V +
Sbjct: 382 YHHAYHTSRLQLQA--------RNYSQLTHVDGQGKAQMVDVGAKPSTTRLARAEATVQV 433
Query: 445 GKRVFDLVLANQMGKGDVLGVAKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFS 624
G+++ L+ NQ+ KGDVL VA+IAGI GAK+T+ LIPLCHNI+L+ V+V L + S
Sbjct: 434 GEKLTQLIADNQVAKGDVLTVAQIAGIMGAKRTAELIPLCHNISLSSVKVQATLLKTEQS 493
Query: 625 VDIEGEASCTGKTGVEMEAMTAVSVAGLTVYDMCKAASKDISITDVRLERKTGGK 789
V +E C+G+TGVEMEA+TAVSVA LTVYDMCKA S DI IT+VRL K+GGK
Sbjct: 494 VRLEATVRCSGQTGVEMEALTAVSVAALTVYDMCKAVSHDICITNVRLLSKSGGK 548
>gb|AAL87446.1| molybdenum cofactor synthesis/low xanthine dehydrogenase
[Drosophila melanogaster]
Length = 172
Score = 164 bits (414), Expect = 2e-39
Identities = 88/154 (57%), Positives = 113/154 (73%)
Frame = +1
Query: 328 ASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGV 507
A + S+LTHV G+AQMVDV +K ++ R A A V +G+++ L+ NQ+ KGDVL V
Sbjct: 2 ARNYSQLTHVDGQGKAQMVDVGAKPSTTRLARAEATVQVGEKLTQLIADNQVAKGDVLTV 61
Query: 508 AKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMT 687
A+IAGI GAK+T+ LIPLCHNI+L+ V+V L + SV +E C+G+TGVEMEA+T
Sbjct: 62 AQIAGIMGAKRTAELIPLCHNISLSSVKVQATLLKTEQSVRLEATVRCSGQTGVEMEALT 121
Query: 688 AVSVAGLTVYDMCKAASKDISITDVRLERKTGGK 789
AVSVA LTVYDMCKA S DI IT+VRL K+GGK
Sbjct: 122 AVSVAALTVYDMCKAVSHDICITNVRLLSKSGGK 155
>gb|AAH27444.1| Unknown (protein for MGC:36285) [Mus musculus]
Length = 249
Score = 160 bits (406), Expect = 2e-38
Identities = 87/179 (48%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
Frame = +1
Query: 277 THSS--KNDSQAIEQYAKVASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGK 450
THS SQA + + ++LTHV AG A MVDV K ++R A+A V+LG
Sbjct: 70 THSKCLSTGSQAPDAPSGPGPTSNQLTHVDSAGRASMVDVGGKPETERVAVASAMVLLGP 129
Query: 451 RVFDLVLANQMGKGDVLGVAKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVD 630
F LV NQ+ KGD L VA++AG+ AK TS LIPLCH++AL+HV+V L L+ +V
Sbjct: 130 VAFKLVQQNQLKKGDALVVAQLAGVQAAKLTSQLIPLCHHVALSHVQVHLELDSTRHAVL 189
Query: 631 IEGEASCTGKTGVEMEAMTAVSVAGLTVYDMCKAASKDISITDVRLERKTGGKSGSWSR 807
I+ G TGVEMEA+T+ ++A LTVYDMCKA S+DI +T+V+L KTGG+ G + R
Sbjct: 190 IQASCRARGPTGVEMEALTSAAMAALTVYDMCKAVSRDIVVTEVKLISKTGGQRGDFHR 248
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 121
effective length of database: 268,435,184
effective search space used: 39996842416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)