BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At1g01290.f
         (813 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_171636.1|  molybdopterin biosynthesis CNX3 protein, p...   529   e-149
emb|CAD40986.1|  OSJNBa0072F16.10 [Oryza sativa (japonica cu...   236   4e-61
gb|AAN11896.1|  CG33048-PC [Drosophila melanogaster]|gi|2466...   167   2e-40
gb|AAL87446.1|  molybdenum cofactor synthesis/low xanthine d...   164   2e-39
gb|AAH27444.1|  Unknown (protein for MGC:36285) [Mus musculus]    160   2e-38
>ref|NP_171636.1| molybdopterin biosynthesis CNX3 protein, putative; protein id:
           At1g01290.1 [Arabidopsis
           thaliana]|gi|662873|emb|CAA88106.1| Cnx3 [Arabidopsis
           thaliana]|gi|11278174|pir||T46961 molybdenum cofactor
           biosynthesis protein cnx3 [validated] - Arabidopsis
           thaliana|gi|9665143|gb|AAF97327.1|AC023628_8
           Molybdopterin Biosythesis CNX3 protein [Arabidopsis
           thaliana]|gi|2497964|sp|Q39056|CNX3_ARATH Molybdopterin
           biosynthesis CNX3 protein (Molybdenum cofactor
           biosynthesis enzyme CNX3)
          Length = 270

 Score =  529 bits (1362), Expect = e-149
 Identities = 270/270 (100%), Positives = 270/270 (100%)
 Frame = +1

Query: 1   MISTLRRAVFLRRFPAVVSPIKRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPDGP 180
           MISTLRRAVFLRRFPAVVSPIKRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPDGP
Sbjct: 1   MISTLRRAVFLRRFPAVVSPIKRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPDGP 60

Query: 181 GTMDFSELKSSKIEPLRSKNIDFRQQIEYHKSTHSSKNDSQAIEQYAKVASDMSKLTHVG 360
           GTMDFSELKSSKIEPLRSKNIDFRQQIEYHKSTHSSKNDSQAIEQYAKVASDMSKLTHVG
Sbjct: 61  GTMDFSELKSSKIEPLRSKNIDFRQQIEYHKSTHSSKNDSQAIEQYAKVASDMSKLTHVG 120

Query: 361 IAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGVAKIAGINGAKQ 540
           IAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGVAKIAGINGAKQ
Sbjct: 121 IAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGVAKIAGINGAKQ 180

Query: 541 TSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMTAVSVAGLTVYD 720
           TSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMTAVSVAGLTVYD
Sbjct: 181 TSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMTAVSVAGLTVYD 240

Query: 721 MCKAASKDISITDVRLERKTGGKSGSWSRL 810
           MCKAASKDISITDVRLERKTGGKSGSWSRL
Sbjct: 241 MCKAASKDISITDVRLERKTGGKSGSWSRL 270
>emb|CAD40986.1| OSJNBa0072F16.10 [Oryza sativa (japonica cultivar-group)]
          Length = 224

 Score =  236 bits (601), Expect = 4e-61
 Identities = 131/230 (56%), Positives = 159/230 (68%)
 Frame = +1

Query: 118 INELNQEMQSIFGQEPSPDGPGTMDFSELKSSKIEPLRSKNIDFRQQIEYHKSTHSSKND 297
           I ELN+EM+S+FG+ PSP        S L S+  +P R  N                  D
Sbjct: 29  IAELNKEMESVFGESPSP--------SPLGSTPQQPARPTN---------------GSGD 65

Query: 298 SQAIEQYAKVASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLAN 477
            Q +            LTH   +G+A+MVDVSSK +S R A+A C+V+LG+  FDLV +N
Sbjct: 66  GQPM------------LTHTDSSGQAKMVDVSSKHDSTRVAIATCRVLLGQEAFDLVASN 113

Query: 478 QMGKGDVLGVAKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTG 657
           ++ KGDVL VAKIAGI GAKQTS+LIPLCHN+ L+HVRVDL LN ED SV IEGEAS +G
Sbjct: 114 KIAKGDVLTVAKIAGITGAKQTSNLIPLCHNLNLSHVRVDLTLNEEDSSVMIEGEASTSG 173

Query: 658 KTGVEMEAMTAVSVAGLTVYDMCKAASKDISITDVRLERKTGGKSGSWSR 807
           KTGVEMEAMTAV++AGLTVYDMCKAASK+I ITD+ L+ K+GGKSGSWSR
Sbjct: 174 KTGVEMEAMTAVAIAGLTVYDMCKAASKNICITDICLQHKSGGKSGSWSR 223
>gb|AAN11896.1| CG33048-PC [Drosophila melanogaster]|gi|24662449|ref|NP_536755.2|
           CG7858-PC [Drosophila melanogaster]
          Length = 565

 Score =  167 bits (423), Expect = 2e-40
 Identities = 93/175 (53%), Positives = 121/175 (69%)
 Frame = +1

Query: 265 YHKSTHSSKNDSQAIEQYAKVASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVIL 444
           YH + H+S+   QA         + S+LTHV   G+AQMVDV +K ++ R A A   V +
Sbjct: 382 YHHAYHTSRLQLQA--------RNYSQLTHVDGQGKAQMVDVGAKPSTTRLARAEATVQV 433

Query: 445 GKRVFDLVLANQMGKGDVLGVAKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFS 624
           G+++  L+  NQ+ KGDVL VA+IAGI GAK+T+ LIPLCHNI+L+ V+V   L   + S
Sbjct: 434 GEKLTQLIADNQVAKGDVLTVAQIAGIMGAKRTAELIPLCHNISLSSVKVQATLLKTEQS 493

Query: 625 VDIEGEASCTGKTGVEMEAMTAVSVAGLTVYDMCKAASKDISITDVRLERKTGGK 789
           V +E    C+G+TGVEMEA+TAVSVA LTVYDMCKA S DI IT+VRL  K+GGK
Sbjct: 494 VRLEATVRCSGQTGVEMEALTAVSVAALTVYDMCKAVSHDICITNVRLLSKSGGK 548
>gb|AAL87446.1| molybdenum cofactor synthesis/low xanthine dehydrogenase
           [Drosophila melanogaster]
          Length = 172

 Score =  164 bits (414), Expect = 2e-39
 Identities = 88/154 (57%), Positives = 113/154 (73%)
 Frame = +1

Query: 328 ASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGV 507
           A + S+LTHV   G+AQMVDV +K ++ R A A   V +G+++  L+  NQ+ KGDVL V
Sbjct: 2   ARNYSQLTHVDGQGKAQMVDVGAKPSTTRLARAEATVQVGEKLTQLIADNQVAKGDVLTV 61

Query: 508 AKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMT 687
           A+IAGI GAK+T+ LIPLCHNI+L+ V+V   L   + SV +E    C+G+TGVEMEA+T
Sbjct: 62  AQIAGIMGAKRTAELIPLCHNISLSSVKVQATLLKTEQSVRLEATVRCSGQTGVEMEALT 121

Query: 688 AVSVAGLTVYDMCKAASKDISITDVRLERKTGGK 789
           AVSVA LTVYDMCKA S DI IT+VRL  K+GGK
Sbjct: 122 AVSVAALTVYDMCKAVSHDICITNVRLLSKSGGK 155
>gb|AAH27444.1| Unknown (protein for MGC:36285) [Mus musculus]
          Length = 249

 Score =  160 bits (406), Expect = 2e-38
 Identities = 87/179 (48%), Positives = 116/179 (64%), Gaps = 2/179 (1%)
 Frame = +1

Query: 277 THSS--KNDSQAIEQYAKVASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGK 450
           THS      SQA +  +      ++LTHV  AG A MVDV  K  ++R A+A   V+LG 
Sbjct: 70  THSKCLSTGSQAPDAPSGPGPTSNQLTHVDSAGRASMVDVGGKPETERVAVASAMVLLGP 129

Query: 451 RVFDLVLANQMGKGDVLGVAKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVD 630
             F LV  NQ+ KGD L VA++AG+  AK TS LIPLCH++AL+HV+V L L+    +V 
Sbjct: 130 VAFKLVQQNQLKKGDALVVAQLAGVQAAKLTSQLIPLCHHVALSHVQVHLELDSTRHAVL 189

Query: 631 IEGEASCTGKTGVEMEAMTAVSVAGLTVYDMCKAASKDISITDVRLERKTGGKSGSWSR 807
           I+      G TGVEMEA+T+ ++A LTVYDMCKA S+DI +T+V+L  KTGG+ G + R
Sbjct: 190 IQASCRARGPTGVEMEALTSAAMAALTVYDMCKAVSRDIVVTEVKLISKTGGQRGDFHR 248
  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 121
effective length of database: 268,435,184
effective search space used: 39996842416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results