BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g02670.f
(2037 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171767.1| hypothetical protein; protein id: At1g0267... 1340 0.0
gb|AAG10633.1|AC022521_11 Similar nucleotide excision repai... 960 0.0
ref|NP_172004.1| similar to DNA repair protein-like; protei... 505 e-142
pir||T41479 RAD16 nucleotide excision repair protein homolo... 349 8e-95
sp|P79051|RH16_SCHPO DNA repair protein rhp16 (RAD16 homolog) 349 8e-95
>ref|NP_171767.1| hypothetical protein; protein id: At1g02670.1 [Arabidopsis thaliana]
Length = 678
Score = 1340 bits (3469), Expect = 0.0
Identities = 678/678 (100%), Positives = 678/678 (100%)
Frame = +1
Query: 1 MAGLRSVHVGSETKVVSKNECAHVTLWTGTAQGDLGVAMEPHSHHKNAILPSSSQDENLK 180
MAGLRSVHVGSETKVVSKNECAHVTLWTGTAQGDLGVAMEPHSHHKNAILPSSSQDENLK
Sbjct: 1 MAGLRSVHVGSETKVVSKNECAHVTLWTGTAQGDLGVAMEPHSHHKNAILPSSSQDENLK 60
Query: 181 EEEVPDDDDSVGGEVQGEVNANDYIPNPAAPANTKRKWQIMKEKVQMTEDDDFDEQNAVI 360
EEEVPDDDDSVGGEVQGEVNANDYIPNPAAPANTKRKWQIMKEKVQMTEDDDFDEQNAVI
Sbjct: 61 EEEVPDDDDSVGGEVQGEVNANDYIPNPAAPANTKRKWQIMKEKVQMTEDDDFDEQNAVI 120
Query: 361 AEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREV 540
AEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREV
Sbjct: 121 AEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREV 180
Query: 541 DRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFV 720
DRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFV
Sbjct: 181 DRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKLMNYDFV 240
Query: 721 LTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRW 900
LTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRW
Sbjct: 241 LTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRW 300
Query: 901 ALSGTPLQNDVDELYSLVSYSFLNFFYSTYASFAFRHTHITFARNVTVKFLIGGNILPLS 1080
ALSGTPLQNDVDELYSLVSYSFLNFFYSTYASFAFRHTHITFARNVTVKFLIGGNILPLS
Sbjct: 301 ALSGTPLQNDVDELYSLVSYSFLNFFYSTYASFAFRHTHITFARNVTVKFLIGGNILPLS 360
Query: 1081 IPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNY 1260
IPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNY
Sbjct: 361 IPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNY 420
Query: 1261 AHIFGLLIRLRQAVDHPYLVSYSSPSGANANLLDANKNEKECGFGHDPSKDYFVTSSEHQ 1440
AHIFGLLIRLRQAVDHPYLVSYSSPSGANANLLDANKNEKECGFGHDPSKDYFVTSSEHQ
Sbjct: 421 AHIFGLLIRLRQAVDHPYLVSYSSPSGANANLLDANKNEKECGFGHDPSKDYFVTSSEHQ 480
Query: 1441 ASKTKLKGFRASSILNRINLDDFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDL 1620
ASKTKLKGFRASSILNRINLDDFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDL
Sbjct: 481 ASKTKLKGFRASSILNRINLDDFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDL 540
Query: 1621 ISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVF 1800
ISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVF
Sbjct: 541 ISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVF 600
Query: 1801 MMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDS 1980
MMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDS
Sbjct: 601 MMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDS 660
Query: 1981 EEAVVQKLGEDDIKSLFA 2034
EEAVVQKLGEDDIKSLFA
Sbjct: 661 EEAVVQKLGEDDIKSLFA 678
>gb|AAG10633.1|AC022521_11 Similar nucleotide excision repair proteins [Arabidopsis
thaliana]|gi|25517999|pir||G86156 T14P4.5 protein -
Arabidopsis thaliana
Length = 627
Score = 960 bits (2482), Expect = 0.0
Identities = 514/629 (81%), Positives = 532/629 (83%), Gaps = 57/629 (9%)
Frame = +1
Query: 319 MTEDDDFDEQNAVIAEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGK 498
MTEDDDFDEQNAVIAEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGK
Sbjct: 1 MTEDDDFDEQNAVIAEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGK 60
Query: 499 TIQAISLVLARREVDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPK 678
TIQAISLVLARREVDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPK
Sbjct: 61 TIQAISLVLARREVDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPK 120
Query: 679 RDKNVQKLMNYDFVLTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSR 858
RDKNVQKLMNYDFVLTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSR
Sbjct: 121 RDKNVQKLMNYDFVLTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSR 180
Query: 859 TAKAVFALEATYRWALSGTPLQNDVDELYSLVSYSFLNFF-------------------- 978
TAKAVFALEATYRWALSGTPLQNDVDELYSL+ + ++ +
Sbjct: 181 TAKAVFALEATYRWALSGTPLQNDVDELYSLIRFLRVSPYSYYFCKKCDCEVLDRSAHRK 240
Query: 979 -----YSTYASFAFRHTHITFARNVTVKFLIGGNILPLSIPVRIENVPAVLIMQINTSLG 1143
++ ++ ++ RN FL N+L I +R + + + + +
Sbjct: 241 CPSCPHNANQHISWWKENVDKRRNRACIFL-KQNVLK-DILLRRTKLGRAADLALPSRII 298
Query: 1144 GKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVS 1323
RRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVS
Sbjct: 299 SLRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVS 358
Query: 1324 YSSPSGANANLLDANKNEKECGFGHDPSKDYFVTSSEHQASKTKLKGFRASSILNRINLD 1503
YSSPSGANANLLDANKNEKECGFGHDPSKDYFVTSSEHQASKTKLKGFRASSILNRINLD
Sbjct: 359 YSSPSGANANLLDANKNEKECGFGHDPSKDYFVTSSEHQASKTKLKGFRASSILNRINLD 418
Query: 1504 DFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSK 1683
DFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSK
Sbjct: 419 DFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSK 478
Query: 1684 AAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRI 1863
AAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRI
Sbjct: 479 AAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRI 538
Query: 1864 GQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFE--------------------------- 1962
GQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFE
Sbjct: 539 GQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFERFLILNDTLLSTLLVSYCQLYEAYMKT 598
Query: 1963 -----STLGDSEEAVVQKLGEDDIKSLFA 2034
STLGDSEEAVVQKLGEDDIKSLFA
Sbjct: 599 YLLCYSTLGDSEEAVVQKLGEDDIKSLFA 627
Score = 101 bits (251), Expect = 5e-20
Identities = 45/55 (81%), Positives = 45/55 (81%)
Frame = +3
Query: 987 IRFLRVSPYSYYFCKKCDCEVLDRR*HLTTLNSCAHRKCPSCPHNANQHISWWKE 1151
IRFLRVSPYSYYFCKKCDCEVLDR AHRKCPSCPHNANQHISWWKE
Sbjct: 212 IRFLRVSPYSYYFCKKCDCEVLDR---------SAHRKCPSCPHNANQHISWWKE 257
>ref|NP_172004.1| similar to DNA repair protein-like; protein id: At1g05120.1
[Arabidopsis thaliana]
Length = 833
Score = 505 bits (1301), Expect = e-142
Identities = 291/524 (55%), Positives = 346/524 (65%), Gaps = 70/524 (13%)
Frame = +1
Query: 670 GPKRDKNVQKLMNYDFVLTTSPIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNR 849
G + D K + T + +++ D D+ S LHS+KWNRII+DEAH IK R
Sbjct: 312 GKEADAGEDKKLKKSKKKTKQTVEKDQLGSD---DKEKSLLHSVKWNRIILDEAHYIKER 368
Query: 850 SSRTAKAVFALEATYRWALSGTPLQNDVDELYSLV--------SYSF--------LNFF- 978
S TA+AVFALEATYRWALSGTPLQN V ELYSL+ SY F L++
Sbjct: 369 RSNTARAVFALEATYRWALSGTPLQNRVGELYSLIRFLQIRPYSYYFCKDCDCRILDYVA 428
Query: 979 --------YSTYASFAFRHTHITFARNVTVKFLIGGNILPL-------SIPVRIENVPAV 1113
++ F + + ++ V F +G + L I +R +
Sbjct: 429 HQSCPHCPHNAVRHFCWWNKYVAKPITVYGSFGLGKRAMILLKHKVLKDILLRRTKLGRA 488
Query: 1114 LIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDGYIQAGTLMNNYAHIFGLLIRLR 1293
+ + + RRD L V E D+YESLYK S+ F+ YI+AGTLMNNYAHIF LL RLR
Sbjct: 489 ADLALPPRIITLRRDTLDVKEFDYYESLYKNSQAEFNTYIEAGTLMNNYAHIFDLLTRLR 548
Query: 1294 QAVDHPYLVSYSSPSGANANLLDANKNEKECGFGHDPSKDYFVTS--------------- 1428
QAVDHPYLV YS+ SGANANL+D NK+E+ECG HDP++DY VTS
Sbjct: 549 QAVDHPYLVVYSNSSGANANLVDENKSEQECGLCHDPAEDYVVTSCAHVFCKACLIGFSA 608
Query: 1429 -----------------------SEHQASKTKLKGFRASSILNRINLDDFKTSTKIEALR 1539
+EH+ASKT LKGFRASSILNRI LDDF+TSTKIEALR
Sbjct: 609 SLGKVTCPTCSKLLTVDWTTKADTEHKASKTTLKGFRASSILNRIKLDDFQTSTKIEALR 668
Query: 1540 EEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKE 1719
EEIRFMVERD SAKAIVFSQFTSFLDLI+Y LGK GVSCVQLVGSM+ AA+D A+ FKE
Sbjct: 669 EEIRFMVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKE 728
Query: 1720 EPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFI 1899
+PDCRV LMSL+AGGVALNLT ASHVFMMDPWWNPAVERQAQDRIHRIGQ KP+RVVRFI
Sbjct: 729 DPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFI 788
Query: 1900 MEKTVEEKILTLQKKKEDLFESTLGDSEEAVVQKLGEDDIKSLF 2031
+E TVEE+IL LQKKKE +FE T+G S+EA + KL E+D++ LF
Sbjct: 789 IENTVEERILRLQKKKELVFEGTVGGSQEA-IGKLTEEDMRFLF 831
Score = 225 bits (573), Expect = 2e-57
Identities = 140/260 (53%), Positives = 165/260 (62%), Gaps = 44/260 (16%)
Frame = +1
Query: 115 MEPHSHHKNAILPSSS-----QDENLKEEEVP----DDDDSVGGEVQG---------EVN 240
ME S +K AI PS+ + + +E P DDDS+G E QG EV
Sbjct: 1 MELRSRNK-AIRPSTEVVDLEEGTGINPDEEPYAISSDDDSIGSEFQGDEEEEEELEEVV 59
Query: 241 ANDYIPNPAA---------PANTKRKWQIMKEKV-----------------QMTEDDDFD 342
AND +PNP + ++K KEKV M+ED D D
Sbjct: 60 ANDDLPNPVPVLAIVNLPRASKKRKKPDARKEKVVLLWETWEKEQNSWIDEHMSEDVDLD 119
Query: 343 EQNAVIAEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLV 522
+ NAVIAE AE P DLI+PLL+YQKEFLAWAT QE S V GGILADEMGMGKTIQAISLV
Sbjct: 120 QHNAVIAETAEPPSDLIMPLLRYQKEFLAWATKQEQS-VAGGILADEMGMGKTIQAISLV 178
Query: 523 LARREVDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGPKRDKNVQKL 702
LARREVDRA+ EA G TLVL P VA+SQWL+EI+R TSPGST+VL YHG KR KN+++
Sbjct: 179 LARREVDRAQFGEAAGCTLVLCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEF 238
Query: 703 MNYDFVLTTSPIVENEYRKD 762
MNYDFVLTT VE+EYR++
Sbjct: 239 MNYDFVLTTYSTVESEYRRN 258
Score = 72.8 bits (177), Expect = 2e-11
Identities = 29/55 (52%), Positives = 35/55 (62%)
Frame = +3
Query: 987 IRFLRVSPYSYYFCKKCDCEVLDRR*HLTTLNSCAHRKCPSCPHNANQHISWWKE 1151
IRFL++ PYSYYFCK CDC +LD AH+ CP CPHNA +H WW +
Sbjct: 403 IRFLQIRPYSYYFCKDCDCRILD---------YVAHQSCPHCPHNAVRHFCWWNK 448
>pir||T41479 RAD16 nucleotide excision repair protein homolog - fission yeast
(Schizosaccharomyces pombe)|gi|19075201|ref|NP_587701.1|
RAD16 nucleotide excision repair protein homolog
[Schizosaccharomyces pombe]|gi|3647341|emb|CAA21065.1|
RAD16 nucleotide excision repair protein homolog
[Schizosaccharomyces pombe]
Length = 963
Score = 349 bits (896), Expect = 8e-95
Identities = 237/725 (32%), Positives = 372/725 (50%), Gaps = 97/725 (13%)
Frame = +1
Query: 151 PSSSQDENLKEEEVPDDDDS----VGGEVQGEVNANDYIPNPAAPANTKRKWQIMKEKVQ 318
PSSS + + EE +P S V +++ + P++ + ++++++ +
Sbjct: 271 PSSSTESD--EESIPLSYQSKRRRVSARASSSASSSSRTQAKSIPSHERTHYRLIRQHPE 328
Query: 319 MTED-DDFDEQNAVIAEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMG 495
+ + +E+ + EQP +L++ LL +Q+E + W QE S+ GGILADEMGMG
Sbjct: 329 LEHVWEKLEEEAPREVKQIEQPKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMG 388
Query: 496 KTIQAISLVLARREVDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGP 675
KTIQ I+L+L+ R K TLV+ P VA+ QW +EI T+ + L Y+G
Sbjct: 389 KTIQTIALLLSE---PRGKP------TLVVAPVVAIMQWKEEIDTHTNKALSTYL-YYGQ 438
Query: 676 KRDKNVQKLMNYDFVLTTSPIVENEYRKDE-------GVDETMSPLHSIKWNRIIVDEAH 834
RD + ++L +YD VLT+ ++E+ YRK+ GV + S LH +++ RII+DEAH
Sbjct: 439 ARDISGEELSSYDVVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAH 498
Query: 835 DIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYSLVSY------------------ 960
IK+R+ TA+AV L T + LSGTPLQN + EL+SL+ +
Sbjct: 499 GIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKS 558
Query: 961 -------------------------------SFLNFFYSTYASFAFRHTHITFARNVTVK 1047
F Y AF+ H + +++ ++
Sbjct: 559 LHWRFSDRSNCDECGHKPMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKVH-SLLKHIMLR 617
Query: 1048 FLIGGNILPLSIPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDG 1227
L +P R+ V R+D + E D Y+SLY SK F+
Sbjct: 618 RTKLERADDLGLPPRVVEV---------------RKDLFNEEEEDVYQSLYMDSKRKFNT 662
Query: 1228 YIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVSYSSPSGANANLLDANKNEKECGFGHDPS 1407
Y+ G ++NNYA+IF L+ R+RQ DHP LV S + N+ C + +
Sbjct: 663 YLAEGVVLNNYANIFQLITRMRQMADHPDLVLASKRKTVDIE----NQENIVCKICDEVA 718
Query: 1408 KDYFVTSSEHQASKTKL------------------------------------KGFRASS 1479
+D + H + + + F+ +S
Sbjct: 719 QDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDLSAPALEDFSEEKFKNAS 778
Query: 1480 ILNRINLDDFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCV 1659
ILNRI+++ +++STKIEAL EE+ + ++D + K+IVFSQFTS LDLI + L K+G +CV
Sbjct: 779 ILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCV 838
Query: 1660 QLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQ 1839
+L G M+ A+ A ++ F + + + L+SL+AGGVALNLT AS VFMMDPWWN AV+ Q
Sbjct: 839 KLDGGMTPKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQ 898
Query: 1840 AQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSEEAVVQKLGEDDI 2019
A DRIHRIGQ +P++V+ +E ++E KI+ LQ+KK + +T+ D +E + +L +D+
Sbjct: 899 AMDRIHRIGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATI-DQDEKALNQLSVEDM 957
Query: 2020 KSLFA 2034
+ LF+
Sbjct: 958 QFLFS 962
Score = 38.1 bits (87), Expect = 0.52
Identities = 16/53 (30%), Positives = 25/53 (46%)
Frame = +3
Query: 987 IRFLRVSPYSYYFCKKCDCEVLDRR*HLTTLNSCAHRKCPSCPHNANQHISWW 1145
+RFLR P++YY+C +C+C+ L R C C H H ++
Sbjct: 538 LRFLRADPFAYYYCLQCECKSLHWR-------FSDRSNCDECGHKPMSHTCYF 583
>sp|P79051|RH16_SCHPO DNA repair protein rhp16 (RAD16 homolog)
Length = 861
Score = 349 bits (896), Expect = 8e-95
Identities = 237/725 (32%), Positives = 372/725 (50%), Gaps = 97/725 (13%)
Frame = +1
Query: 151 PSSSQDENLKEEEVPDDDDS----VGGEVQGEVNANDYIPNPAAPANTKRKWQIMKEKVQ 318
PSSS + + EE +P S V +++ + P++ + ++++++ +
Sbjct: 169 PSSSTESD--EESIPLSYQSKRRRVSARASSSASSSSRTQAKSIPSHERTHYRLIRQHPE 226
Query: 319 MTED-DDFDEQNAVIAEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMG 495
+ + +E+ + EQP +L++ LL +Q+E + W QE S+ GGILADEMGMG
Sbjct: 227 LEHVWEKLEEEAPREVKQIEQPKELVLNLLPFQREGVYWLKRQEDSSFGGGILADEMGMG 286
Query: 496 KTIQAISLVLARREVDRAKSREAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYHGP 675
KTIQ I+L+L+ R K TLV+ P VA+ QW +EI T+ + L Y+G
Sbjct: 287 KTIQTIALLLSE---PRGKP------TLVVAPVVAIMQWKEEIDTHTNKALSTYL-YYGQ 336
Query: 676 KRDKNVQKLMNYDFVLTTSPIVENEYRKDE-------GVDETMSPLHSIKWNRIIVDEAH 834
RD + ++L +YD VLT+ ++E+ YRK+ GV + S LH +++ RII+DEAH
Sbjct: 337 ARDISGEELSSYDVVLTSYNVIESVYRKERSGFRRKNGVVKEKSLLHQMEFYRIILDEAH 396
Query: 835 DIKNRSSRTAKAVFALEATYRWALSGTPLQNDVDELYSLVSY------------------ 960
IK+R+ TA+AV L T + LSGTPLQN + EL+SL+ +
Sbjct: 397 GIKSRTCNTARAVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPFAYYYCLQCECKS 456
Query: 961 -------------------------------SFLNFFYSTYASFAFRHTHITFARNVTVK 1047
F Y AF+ H + +++ ++
Sbjct: 457 LHWRFSDRSNCDECGHKPMSHTCYFNAEMLKPIQKFGYEGPGKLAFKKVH-SLLKHIMLR 515
Query: 1048 FLIGGNILPLSIPVRIENVPAVLIMQINTSLGGKRRDALSVVEADFYESLYKVSKTTFDG 1227
L +P R+ V R+D + E D Y+SLY SK F+
Sbjct: 516 RTKLERADDLGLPPRVVEV---------------RKDLFNEEEEDVYQSLYMDSKRKFNT 560
Query: 1228 YIQAGTLMNNYAHIFGLLIRLRQAVDHPYLVSYSSPSGANANLLDANKNEKECGFGHDPS 1407
Y+ G ++NNYA+IF L+ R+RQ DHP LV S + N+ C + +
Sbjct: 561 YLAEGVVLNNYANIFQLITRMRQMADHPDLVLASKRKTVDIE----NQENIVCKICDEVA 616
Query: 1408 KDYFVTSSEHQASKTKL------------------------------------KGFRASS 1479
+D + H + + + F+ +S
Sbjct: 617 QDAIESRCHHTFCRLCVTEYINAAGDGENVNCPSCFIPLSIDLSAPALEDFSEEKFKNAS 676
Query: 1480 ILNRINLDDFKTSTKIEALREEIRFMVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCV 1659
ILNRI+++ +++STKIEAL EE+ + ++D + K+IVFSQFTS LDLI + L K+G +CV
Sbjct: 677 ILNRIDMNSWRSSTKIEALVEELYLLRKKDRTLKSIVFSQFTSMLDLIHWRLRKAGFNCV 736
Query: 1660 QLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQ 1839
+L G M+ A+ A ++ F + + + L+SL+AGGVALNLT AS VFMMDPWWN AV+ Q
Sbjct: 737 KLDGGMTPKARAATIEAFSNDINITIFLVSLKAGGVALNLTEASQVFMMDPWWNGAVQWQ 796
Query: 1840 AQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSEEAVVQKLGEDDI 2019
A DRIHRIGQ +P++V+ +E ++E KI+ LQ+KK + +T+ D +E + +L +D+
Sbjct: 797 AMDRIHRIGQKRPIKVITLCIENSIESKIIELQEKKAQMIHATI-DQDEKALNQLSVEDM 855
Query: 2020 KSLFA 2034
+ LF+
Sbjct: 856 QFLFS 860
Score = 38.1 bits (87), Expect = 0.52
Identities = 16/53 (30%), Positives = 25/53 (46%)
Frame = +3
Query: 987 IRFLRVSPYSYYFCKKCDCEVLDRR*HLTTLNSCAHRKCPSCPHNANQHISWW 1145
+RFLR P++YY+C +C+C+ L R C C H H ++
Sbjct: 436 LRFLRADPFAYYYCLQCECKSLHWR-------FSDRSNCDECGHKPMSHTCYF 481
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 130
effective length of database: 256,305,767
effective search space used: 140455560316
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)