BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g02290.f
(1332 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171731.1| hypothetical protein; protein id: At1g0229... 872 0.0
pir||T47523 DNA-binding protein-like - Arabidopsis thaliana... 119 1e-25
dbj|BAC41867.1| unknown protein [Arabidopsis thaliana] 77 8e-13
dbj|BAB11123.1| gene_id:MAC12.8~unknown protein [Arabidopsi... 76 1e-12
emb|CAA56846.1| R kappa B [Homo sapiens]|gi|1082340|pir||S5... 49 2e-04
>ref|NP_171731.1| hypothetical protein; protein id: At1g02290.1 [Arabidopsis thaliana]
Length = 443
Score = 872 bits (2253), Expect = 0.0
Identities = 432/443 (97%), Positives = 432/443 (97%)
Frame = +1
Query: 1 MNKNQTVGLXXXXXXXXXXXIAQVNCELALVEGQLCNIPYELYDLPDLTGILSVETWNSL 180
MNKNQTVGL IAQVNCELALVEGQLCNIPYELYDLPDLTGILSVETWNSL
Sbjct: 1 MNKNQTVGLDSEDDDSDDYDIAQVNCELALVEGQLCNIPYELYDLPDLTGILSVETWNSL 60
Query: 181 LTEEERFFLSCFLPDMDPQTFSLTMQELLDGANLYFGNPEDKFYKNLLGGLFTPKVACFK 360
LTEEERFFLSCFLPDMDPQTFSLTMQELLDGANLYFGNPEDKFYKNLLGGLFTPKVACFK
Sbjct: 61 LTEEERFFLSCFLPDMDPQTFSLTMQELLDGANLYFGNPEDKFYKNLLGGLFTPKVACFK 120
Query: 361 EGVMFVKRRKYYYSLKFYHEKLIRTFTEMQRVWVQYGNKLGNYSRLLIWSGRTQTGNLKL 540
EGVMFVKRRKYYYSLKFYHEKLIRTFTEMQRVWVQYGNKLGNYSRLLIWSGRTQTGNLKL
Sbjct: 121 EGVMFVKRRKYYYSLKFYHEKLIRTFTEMQRVWVQYGNKLGNYSRLLIWSGRTQTGNLKL 180
Query: 541 LDLNRVPSKEMDSATCRFKTPNVVKPVERNRSKSLTFPRSGSSKNSLKIKITKEGVFRYQ 720
LDLNRVPSKEMDSATCRFKTPNVVKPVERNRSKSLTFPRSGSSKNSLKIKITKEGVFRYQ
Sbjct: 181 LDLNRVPSKEMDSATCRFKTPNVVKPVERNRSKSLTFPRSGSSKNSLKIKITKEGVFRYQ 240
Query: 721 GSSLVSAGHHHQTLPKGVLKLVPKSSSAILRKPYVAPGNNLLQIHETGSKSTRFAASPYL 900
GSSLVSAGHHHQTLPKGVLKLVPKSSSAILRKPYVAPGNNLLQIHETGSKSTRFAASPYL
Sbjct: 241 GSSLVSAGHHHQTLPKGVLKLVPKSSSAILRKPYVAPGNNLLQIHETGSKSTRFAASPYL 300
Query: 901 GTTFEKPPYGTLGCSIPDPFLTYLETTQRSIQGTEPVFHDPTHTVPSALRVSNYSITEQN 1080
GTTFEKPPYGTLGCSIPDPFLTYLETTQRSIQGTEPVFHDPTHTVPSALRVSNYSITEQN
Sbjct: 301 GTTFEKPPYGTLGCSIPDPFLTYLETTQRSIQGTEPVFHDPTHTVPSALRVSNYSITEQN 360
Query: 1081 IPLKQEEYVRYHLKSPGFKPRTVDRGSETTESKRISSSNNFQREAKALRKPLGVLSEDNH 1260
IPLKQEEYVRYHLKSPGFKPRTVDRGSETTESKRISSSNNFQREAKALRKPLGVLSEDNH
Sbjct: 361 IPLKQEEYVRYHLKSPGFKPRTVDRGSETTESKRISSSNNFQREAKALRKPLGVLSEDNH 420
Query: 1261 AREANSDHLFSLTYKRRKVQRIA 1329
AREANSDHLFSLTYKRRKVQRIA
Sbjct: 421 AREANSDHLFSLTYKRRKVQRIA 443
>pir||T47523 DNA-binding protein-like - Arabidopsis
thaliana|gi|7339484|emb|CAB82807.1| DNA-binding
protein-like [Arabidopsis
thaliana]|gi|15231253|ref|NP_190169.1| DNA-binding
protein - like; protein id: At3g45830.1 [Arabidopsis
thaliana]
Length = 1298
Score = 119 bits (298), Expect = 1e-25
Identities = 56/133 (42%), Positives = 79/133 (59%)
Frame = +1
Query: 61 IAQVNCELALVEGQLCNIPYELYDLPDLTGILSVETWNSLLTEEERFFLSCFLPDMDPQT 240
+A+ E V C+IP+ELYDLP L ILSV+ WN LTE+ERF LS +LPD+D T
Sbjct: 66 LAETGAEFCQVGNVTCSIPFELYDLPSLEDILSVDVWNECLTEKERFSLSSYLPDVDQLT 125
Query: 241 FSLTMQELLDGANLYFGNPEDKFYKNLLGGLFTPKVACFKEGVMFVKRRKYYYSLKFYHE 420
F T++EL +G N +FG+P K + L GG P+ + EG R K+Y+SL+ YH
Sbjct: 126 FMRTLKELFEGCNFHFGSPVKKLFDMLKGGQCEPRNTLYLEGRSLFLRTKHYHSLRKYHN 185
Query: 421 KLIRTFTEMQRVW 459
++ + + W
Sbjct: 186 DMVVNLCQTRDAW 198
>dbj|BAC41867.1| unknown protein [Arabidopsis thaliana]
Length = 939
Score = 76.6 bits (187), Expect = 8e-13
Identities = 46/151 (30%), Positives = 82/151 (53%), Gaps = 1/151 (0%)
Frame = +1
Query: 91 VEGQLCNIPYELYDLPDLTGILSVETWNSLLTEEERFFLSCFLPD-MDPQTFSLTMQELL 267
V Q+C +P+E + L +L+ +LS E W S L++ ER +L FLP+ +D + +Q LL
Sbjct: 82 VLAQVCPVPHETFQLENLSEVLSNEVWRSCLSDGERNYLRQFLPEGVDVEQ---VVQALL 138
Query: 268 DGANLYFGNPEDKFYKNLLGGLFTPKVACFKEGVMFVKRRKYYYSLKFYHEKLIRTFTEM 447
DG N +FGNP + + G P +E + +R+YY +L+ YH+ +I +
Sbjct: 139 DGENFHFGNPSLDWGTAVCSGKAHPDQIVSREECLRADKRRYYSNLEKYHQDIIDYLQTL 198
Query: 448 QRVWVQYGNKLGNYSRLLIWSGRTQTGNLKL 540
+ W + + +++ W GR++ GN ++
Sbjct: 199 EEKWESCKDPEKDIVKMM-W-GRSRGGNAQV 227
>dbj|BAB11123.1| gene_id:MAC12.8~unknown protein [Arabidopsis
thaliana]|gi|15240757|ref|NP_196899.1| unknown protein;
protein id: At5g13950.1 [Arabidopsis thaliana]
Length = 978
Score = 76.3 bits (186), Expect = 1e-12
Identities = 46/151 (30%), Positives = 82/151 (53%), Gaps = 1/151 (0%)
Frame = +1
Query: 91 VEGQLCNIPYELYDLPDLTGILSVETWNSLLTEEERFFLSCFLPD-MDPQTFSLTMQELL 267
V Q+C +P+E + L +L+ +LS E W S L++ ER +L FLP+ +D + +Q LL
Sbjct: 121 VLAQVCPVPHETFQLENLSEVLSNEVWRSCLSDGERNYLRQFLPEGVDVEQ---VVQALL 177
Query: 268 DGANLYFGNPEDKFYKNLLGGLFTPKVACFKEGVMFVKRRKYYYSLKFYHEKLIRTFTEM 447
DG N +FGNP + + G P +E + +R+YY +L+ YH+ +I +
Sbjct: 178 DGENFHFGNPSLDWGTAVCSGKAHPDQIVSREECLRADKRRYYSNLEKYHQDIIDYLQTL 237
Query: 448 QRVWVQYGNKLGNYSRLLIWSGRTQTGNLKL 540
+ W + + +++ W GR++ GN ++
Sbjct: 238 KEKWESCKDPEKDIVKMM-W-GRSRGGNAQV 266
>emb|CAA56846.1| R kappa B [Homo sapiens]|gi|1082340|pir||S52863 DNA-binding protein
R kappa B - human|gi|23346420|ref|NP_006156.2| nuclear
factor related to kappa B binding protein [Homo sapiens]
Length = 1324
Score = 48.9 bits (115), Expect = 2e-04
Identities = 33/123 (26%), Positives = 61/123 (48%), Gaps = 5/123 (4%)
Frame = +1
Query: 79 ELALVEGQLCNIPYELYDLPDLT-GILSVETWNSLLTEEERFFLSCFLPDMDPQTFSLTM 255
E L+ G ++P +L + P++ ++S+ TW +L++ +R L FLP P+ +
Sbjct: 40 EDCLLGGTRVSLPEDLLEDPEIFFDVVSLSTWQEVLSDSQREHLQQFLPQF-PEDSAEQQ 98
Query: 256 QELL----DGANLYFGNPEDKFYKNLLGGLFTPKVACFKEGVMFVKRRKYYYSLKFYHEK 423
EL+ G N FGNP K G F P+V +++ + ++Y S + Y +
Sbjct: 99 NELILALFSGENFRFGNPLHIAQKLFRDGHFNPEVVKYRQLCFKSQYKRYLNSQQQYFHR 158
Query: 424 LIR 432
L++
Sbjct: 159 LLK 161
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 126
effective length of database: 261,696,619
effective search space used: 82957828223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)