BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g02250.f
(1053 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171727.1| NAM (no apical meristem)-like protein, put... 719 0.0
gb|AAC24384.1| Hypothetical protein [Arabidopsis thaliana] 356 e-102
gb|AAC24383.1| Hypothetical protein [Arabidopsis thaliana] 360 1e-98
ref|NP_171726.1| hypothetical protein; protein id: At1g0223... 360 1e-98
ref|NP_171725.1| NAM (no apical meristem)-like protein, put... 304 1e-81
>ref|NP_171727.1| NAM (no apical meristem)-like protein, putative; protein id:
At1g02250.1 [Arabidopsis thaliana]
Length = 350
Score = 719 bits (1857), Expect = 0.0
Identities = 350/350 (100%), Positives = 350/350 (100%)
Frame = +1
Query: 1 MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 180
MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD
Sbjct: 1 MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 60
Query: 181 QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHGG 360
QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHGG
Sbjct: 61 QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHGG 120
Query: 361 SKSDWAMHEYHATFSSPNQGERREFSVATGSGIKHTHSLIPPTNNSGVLSVETEGSLFHS 540
SKSDWAMHEYHATFSSPNQGERREFSVATGSGIKHTHSLIPPTNNSGVLSVETEGSLFHS
Sbjct: 121 SKSDWAMHEYHATFSSPNQGERREFSVATGSGIKHTHSLIPPTNNSGVLSVETEGSLFHS 180
Query: 541 QESQNPSQFSGFLDVDALDRDFCNILSDDFKGFFNDDDEQSKIVSMQDDRNNHTPQKPLT 720
QESQNPSQFSGFLDVDALDRDFCNILSDDFKGFFNDDDEQSKIVSMQDDRNNHTPQKPLT
Sbjct: 181 QESQNPSQFSGFLDVDALDRDFCNILSDDFKGFFNDDDEQSKIVSMQDDRNNHTPQKPLT 240
Query: 721 GVFSDHSTDGSDSDPISATTISIQTLSTCPSFGSSNPLYQITDLQESPNSIKLVSLAQEV 900
GVFSDHSTDGSDSDPISATTISIQTLSTCPSFGSSNPLYQITDLQESPNSIKLVSLAQEV
Sbjct: 241 GVFSDHSTDGSDSDPISATTISIQTLSTCPSFGSSNPLYQITDLQESPNSIKLVSLAQEV 300
Query: 901 SKTPGTGIDNDAQGTEIGEHKLGQETIKNKRAGFFHRMIQKFVKKIHLRT 1050
SKTPGTGIDNDAQGTEIGEHKLGQETIKNKRAGFFHRMIQKFVKKIHLRT
Sbjct: 301 SKTPGTGIDNDAQGTEIGEHKLGQETIKNKRAGFFHRMIQKFVKKIHLRT 350
>gb|AAC24384.1| Hypothetical protein [Arabidopsis thaliana]
Length = 253
Score = 356 bits (913), Expect(2) = e-102
Identities = 180/212 (84%), Positives = 183/212 (85%)
Frame = +1
Query: 151 PSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEK 330
P+HSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKI
Sbjct: 50 PAHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKI--- 106
Query: 331 RVLVFKNHGGSKSDWAMHEYHATFSSPNQGERREFSVATGSGIKHTHSLIPPTNNSGVLS 510
+ FK GERREFSVATGSGIKHTHSLIPPTNNSGVLS
Sbjct: 107 --VKFK-----------------------GERREFSVATGSGIKHTHSLIPPTNNSGVLS 141
Query: 511 VETEGSLFHSQESQNPSQFSGFLDVDALDRDFCNILSDDFKGFFNDDDEQSKIVSMQDDR 690
VETEGSLFHSQESQNPSQFSGFLDVDALDRDFCNILSDDFKGFFNDDDEQSKIVSMQDDR
Sbjct: 142 VETEGSLFHSQESQNPSQFSGFLDVDALDRDFCNILSDDFKGFFNDDDEQSKIVSMQDDR 201
Query: 691 NNHTPQKPLTGVFSDHSTDGSDSDPISATTIS 786
NNHTPQKPLTGVFSDHSTDGSDSDPISATT+S
Sbjct: 202 NNHTPQKPLTGVFSDHSTDGSDSDPISATTVS 233
Score = 40.4 bits (93), Expect(2) = e-102
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 95 MSMKSLAQLIFVASTLGTYL 154
MSMKSLAQLIFVASTLGTYL
Sbjct: 1 MSMKSLAQLIFVASTLGTYL 20
>gb|AAC24383.1| Hypothetical protein [Arabidopsis thaliana]
Length = 345
Score = 360 bits (925), Expect = 1e-98
Identities = 204/362 (56%), Positives = 247/362 (67%), Gaps = 15/362 (4%)
Frame = +1
Query: 1 MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 180
M NPVGFRFRP D EIVD YLRPKNL+S+TSHVDEVISTVDICSF+PWDLPS S +K+RD
Sbjct: 1 MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60
Query: 181 QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHGG 360
VWYFF KE KY +GD+Q R+T SGFWKKTG TM +MRK G+REKIGEKRVLVFKN G
Sbjct: 61 GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRDG 120
Query: 361 SKSDWAMHEYHATFSSPNQ------------GERREF-SVATGSGIKHTHSLIPPTNNSG 501
SK+DW MHEYHAT PNQ GE E S +TGS I+ HSLIP N+SG
Sbjct: 121 SKTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSSTGSEIEQIHSLIPLVNSSG 180
Query: 502 VLSVETEGSLFHSQESQNPSQFSGFLDVDALDRDFCNILSDDFKGFFNDD-DEQSKIVSM 678
+E +F + + ++ +D D + +++K + N+D DEQ I+ M
Sbjct: 181 ----GSESGVFANVQGES--------QID----DATTPIEEEWKTWLNNDGDEQRNIMFM 224
Query: 679 QDDRNNHTPQKPLTGVFSDHSTDGSDSDPISATTISIQTLSTCPSFGSSNPLYQITDLQE 858
QD R+++TP K LTGVFSD S+D +DSD IS T SI T STC SF SSN +QI Q
Sbjct: 225 QDHRSDYTPLKSLTGVFSDDSSDDNDSDLISPKTNSIGTSSTCASFASSN--HQIDQTQH 282
Query: 859 SPNS-IKLVSLAQEVSKTPGTGIDNDAQGTEIGEHKLGQETIKNKRAGFFHRMIQKFVKK 1035
SP+S ++LVSL QEVS+ PG Q T I EHKLG+E++K KRA F +RMI + VKK
Sbjct: 283 SPDSTVQLVSLTQEVSQGPG-------QVTVIREHKLGEESVKKKRASFVYRMIHRLVKK 335
Query: 1036 IH 1041
IH
Sbjct: 336 IH 337
>ref|NP_171726.1| hypothetical protein; protein id: At1g02230.1 [Arabidopsis thaliana]
Length = 579
Score = 360 bits (925), Expect = 1e-98
Identities = 209/373 (56%), Positives = 248/373 (66%), Gaps = 26/373 (6%)
Frame = +1
Query: 1 MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 180
M NPVGFRFRP D EIVD YLRPKNL+S+TSHVDEVISTVDICSF+PWDLPS S +K+RD
Sbjct: 1 MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60
Query: 181 QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHGG 360
VWYFF KE KY +GD+Q R+T SGFWKKTG TM +MRK G+REKIGEKRVLVFKN G
Sbjct: 61 GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRDG 120
Query: 361 SKSDWAMHEYHATFSSPNQ------------GERREF-SVATGSGIKHTHSLIPPTNNSG 501
SK+DW MHEYHAT PNQ GE E S +TGS I+ HSLIP N+SG
Sbjct: 121 SKTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSSTGSEIEQIHSLIPLVNSSG 180
Query: 502 -----------VLSVETEGSLFHSQESQNPSQFSGFLDVDALDRDFCNILSDDFKGFFND 648
VLS+ET L F F ++ D + +++K + N+
Sbjct: 181 GSEVGESQTFSVLSLETLKYL--------TLVFLPFFRGESQIDDATTPIEEEWKTWLNN 232
Query: 649 D-DEQSKIVSMQDDRNNHTPQKPLTGVFSDHSTDGSDSDPISATTISIQTLSTCPSFGSS 825
D DEQ I+ MQD R+++TP K LTGVFSD S+D +DSD IS T SI T STC SF SS
Sbjct: 233 DGDEQRNIMFMQDHRSDYTPLKSLTGVFSDDSSDDNDSDLISPKTNSIGTSSTCASFASS 292
Query: 826 NPLYQITDLQESPNS-IKLVSLAQEVSKTPGTGIDNDAQGTEIGEHKLGQETIKNKRAGF 1002
N +QI Q SP+S ++LVSL QEVS+ PG Q T I EHKLG+E++K KRA F
Sbjct: 293 N--HQIDQTQHSPDSTVQLVSLTQEVSQGPG-------QVTVIREHKLGEESVKKKRASF 343
Query: 1003 FHRMIQKFVKKIH 1041
+RMI + VKKIH
Sbjct: 344 VYRMIHRLVKKIH 356
>ref|NP_171725.1| NAM (no apical meristem)-like protein, putative; protein id:
At1g02220.1 [Arabidopsis thaliana]
Length = 394
Score = 304 bits (779), Expect = 1e-81
Identities = 189/395 (47%), Positives = 235/395 (58%), Gaps = 47/395 (11%)
Frame = +1
Query: 1 MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 180
M PVG RF PTD EIV YL PKN + +TSHVD I+TV +C DPW+LP SR+K +D
Sbjct: 1 METPVGLRFCPTDEEIVVDYLWPKNSDRDTSHVDRFINTVPVCRLDPWELPCQSRIKLKD 60
Query: 181 QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVFKNHGG 360
W FF KENKYG+GD+Q+RKTKSGFWK TG IMR +R++IGEK++L+F
Sbjct: 61 VAWCFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPIMR---NRQQIGEKKILMFYTSKE 117
Query: 361 SKSDWAMHEYHATFSSPNQGERREFSVATGSGIKHTHSLIPPTNNSGVLSVE-------- 516
SKSDW +HEYH + V G++ S P ++SGV +E
Sbjct: 118 SKSDWVIHEYHGFSHNQMMMTYTLCKVMFNGGMREKSSSSP--SSSGVSGIEQSRRDSLI 175
Query: 517 ------TEGSLFHSQESQNPSQFSGFLDVDAL---------------DRDFCNILS---- 621
+EGS H ++ PSQF L + D D I
Sbjct: 176 PQLVNNSEGSSLHRED---PSQFGDVLQEAPIEDAKLTEELVKWLMNDEDDAQIEDAIPI 232
Query: 622 DDFKGFFN--DDDEQSKIVSMQDDRNNHTPQKPLTGVFSDH-STDGSDSDPISATTISIQ 792
++++ + N DD ++ I+ M D+R+++ P LTGVFSD S+D +DSD ++ T SIQ
Sbjct: 233 EEWETWLNDIDDAKEKSIMFMHDNRSDYRPPNSLTGVFSDDVSSDDNDSDLLTPKTNSIQ 292
Query: 793 TLSTCPSFGSSN-PLYQITDLQESPNS-IKLVSLAQEVSKTPGTGID---------NDAQ 939
T STC SFGSSN + QI DLQESP S I LVSL QEVS+ T ID +DAQ
Sbjct: 293 TSSTCDSFGSSNHRIDQIKDLQESPTSTINLVSLTQEVSQALITSIDTAEKKKNPYDDAQ 352
Query: 940 GTEIGEHKLGQETIKNKRAGFFHRMIQKFVKKIHL 1044
GTEIGEHKLGQETIK KRAGFFHRMIQKFVKKIHL
Sbjct: 353 GTEIGEHKLGQETIKKKRAGFFHRMIQKFVKKIHL 387
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 124
effective length of database: 264,392,045
effective search space used: 59752602170
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)