BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01150.f
(948 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171623.1| hypothetical protein; protein id: At1g0115... 577 e-164
gb|AAF26467.1|AC007323_8 T25K16.14 [Arabidopsis thaliana] 524 e-161
pir||T48405 myb-like protein - Arabidopsis thaliana|gi|9758... 88 2e-16
dbj|BAC42517.1| myb like protein [Arabidopsis thaliana] 88 2e-16
pir||T06625 hypothetical protein T20K18.20 - Arabidopsis th... 62 1e-08
>ref|NP_171623.1| hypothetical protein; protein id: At1g01150.1 [Arabidopsis thaliana]
Length = 345
Score = 577 bits (1487), Expect = e-164
Identities = 291/345 (84%), Positives = 291/345 (84%), Gaps = 30/345 (8%)
Frame = +1
Query: 1 MVSDLPLDEDDIALLKSPY----------------------CDDGGDEDVNSAPNIFTYD 114
MVSDLPLDEDDIALLKSPY CDDGGDEDVNSAPNIFTYD
Sbjct: 1 MVSDLPLDEDDIALLKSPYIGEIVEEIGFVREKRIAHCIVQCDDGGDEDVNSAPNIFTYD 60
Query: 115 NVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCED 294
NVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCED
Sbjct: 61 NVPLKKRHYLGTSDTFRSFEPLNEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCED 120
Query: 295 PATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDN 474
PATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDN
Sbjct: 121 PATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDN 180
Query: 475 SLPMXXXXXXXXXXXXVKHLKARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVN 654
SLPM VKHLKARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVN
Sbjct: 181 SLPMQLHENLHQLQELVKHLKARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVN 240
Query: 655 EEKMLR-GVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNM-------XXXX 810
EEKMLR GVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNM
Sbjct: 241 EEKMLREGVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNMNYLDLVEVEID 300
Query: 811 XXXXXXXXGDQNGEGKKRRSDEEDESNRNHPKIRICGMVFVKPIT 945
GDQNGEGKKRRSDEEDESNRNHPKIRICGMVFVKPIT
Sbjct: 301 IIIVVAEIGDQNGEGKKRRSDEEDESNRNHPKIRICGMVFVKPIT 345
>gb|AAF26467.1|AC007323_8 T25K16.14 [Arabidopsis thaliana]
Length = 321
Score = 524 bits (1349), Expect(2) = e-161
Identities = 254/267 (95%), Positives = 254/267 (95%), Gaps = 1/267 (0%)
Frame = +1
Query: 1 MVSDLPLDEDDIALLKSPYCDDGGDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPL 180
MVSDLPLDEDDIALLKSPYCDDGGDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPL
Sbjct: 1 MVSDLPLDEDDIALLKSPYCDDGGDEDVNSAPNIFTYDNVPLKKRHYLGTSDTFRSFEPL 60
Query: 181 NEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCEDPATFYCPYCWFKEQATRSTALR 360
NEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCEDPATFYCPYCWFKEQATRSTALR
Sbjct: 61 NEHACIVCDIADDGVVPCSGNECPLAVHRKCVELDCEDPATFYCPYCWFKEQATRSTALR 120
Query: 361 TRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDNSLPMXXXXXXXXXXXXVKHLKA 540
TRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDNSLPM VKHLKA
Sbjct: 121 TRGVAAAKTLVQYGCSELRSGDIVMTRENSQLENGSDNSLPMQLHENLHQLQELVKHLKA 180
Query: 541 RNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLR-GVEKFSDTINKNMPW 717
RNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLR GVEKFSDTINKNMPW
Sbjct: 181 RNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLREGVEKFSDTINKNMPW 240
Query: 718 KKILEMGKGIFHTTRNSSDLKDKWRNM 798
KKILEMGKGIFHTTRNSSDLKDKWRNM
Sbjct: 241 KKILEMGKGIFHTTRNSSDLKDKWRNM 267
Score = 68.9 bits (167), Expect(2) = e-161
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +2
Query: 836 EIKMERERNAGVMKKMSPTGTIQRLEFVGWYL 931
EIKMERERNAGVMKKMSPTGTIQRLEFVGWYL
Sbjct: 290 EIKMERERNAGVMKKMSPTGTIQRLEFVGWYL 321
>pir||T48405 myb-like protein - Arabidopsis thaliana|gi|9758006|dbj|BAB08603.1|
Myb-like protein [Arabidopsis
thaliana]|gi|7340663|emb|CAB82943.1| myb-like protein
[Arabidopsis thaliana]|gi|15237523|ref|NP_195998.1| myb
-like protein; protein id: At5g03780.1 [Arabidopsis
thaliana]
Length = 412
Score = 87.8 bits (216), Expect = 2e-16
Identities = 44/89 (49%), Positives = 60/89 (66%), Gaps = 1/89 (1%)
Frame = +1
Query: 535 KARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLR-GVEKFSDTINKNM 711
+ RN Q +T + + K+ + DQ +R+LWT EE+ML+ GVEKF+ NKNM
Sbjct: 309 RMRNQQ---ATTKVVAKSKTVRDISFFKMDQRRRLLWTYEEEEMLKVGVEKFAAEANKNM 365
Query: 712 PWKKILEMGKGIFHTTRNSSDLKDKWRNM 798
PW+KILEMG+ +FH TR +DLKDKWR+M
Sbjct: 366 PWRKILEMGEKVFHETRTPADLKDKWRSM 394
Score = 81.6 bits (200), Expect = 1e-14
Identities = 49/131 (37%), Positives = 71/131 (53%), Gaps = 15/131 (11%)
Frame = +1
Query: 115 NVPLKKRHYLGTSDTFR---SFEPLNE-HACIVCDIADDGVVPCSGNECPLAVHRKCVEL 282
+VP KKR LGTS+T S EPL + ACIVC+++D+ V C G +C L+ H +C+
Sbjct: 35 DVPHKKRRCLGTSETTDRGGSVEPLLDLDACIVCEVSDERVSRCCGVDCLLSFHGECLYA 94
Query: 283 DC-----------EDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDI 429
D ED + +CPYCW K A +S LR + V A K + +Y E++S D
Sbjct: 95 DLGSTSSSSSSSSEDVSNPFCPYCWLKIVALKSKTLREKTVEAEKAVCKYLDKEMKSRDE 154
Query: 430 VMTRENSQLEN 462
+T ++ N
Sbjct: 155 DITLSGDEIGN 165
>dbj|BAC42517.1| myb like protein [Arabidopsis thaliana]
Length = 420
Score = 87.8 bits (216), Expect = 2e-16
Identities = 44/89 (49%), Positives = 60/89 (66%), Gaps = 1/89 (1%)
Frame = +1
Query: 535 KARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLR-GVEKFSDTINKNM 711
+ RN Q +T + + K+ + DQ +R+LWT EE+ML+ GVEKF+ NKNM
Sbjct: 317 RMRNQQ---ATTKVVAKSKTVRDISFFKMDQRRRLLWTYEEEEMLKVGVEKFAAEANKNM 373
Query: 712 PWKKILEMGKGIFHTTRNSSDLKDKWRNM 798
PW+KILEMG+ +FH TR +DLKDKWR+M
Sbjct: 374 PWRKILEMGEKVFHETRTPADLKDKWRSM 402
Score = 81.6 bits (200), Expect = 1e-14
Identities = 49/131 (37%), Positives = 71/131 (53%), Gaps = 15/131 (11%)
Frame = +1
Query: 115 NVPLKKRHYLGTSDTFR---SFEPLNE-HACIVCDIADDGVVPCSGNECPLAVHRKCVEL 282
+VP KKR LGTS+T S EPL + ACIVC+++D+ V C G +C L+ H +C+
Sbjct: 43 DVPHKKRRCLGTSETTDRGGSVEPLLDLDACIVCEVSDERVSRCCGVDCLLSFHGECLYA 102
Query: 283 DC-----------EDPATFYCPYCWFKEQATRSTALRTRGVAAAKTLVQYGCSELRSGDI 429
D ED + +CPYCW K A +S LR + V A K + +Y E++S D
Sbjct: 103 DLGSTSSSSSSSSEDVSNPFCPYCWLKIVALKSKTLREKTVEAEKAVCKYLDKEMKSRDE 162
Query: 430 VMTRENSQLEN 462
+T ++ N
Sbjct: 163 GITLSGDEIGN 173
>pir||T06625 hypothetical protein T20K18.20 - Arabidopsis
thaliana|gi|4586243|emb|CAB40984.1| putative protein
[Arabidopsis thaliana]|gi|7267968|emb|CAB78309.1|
putative protein [Arabidopsis
thaliana]|gi|15235447|ref|NP_193003.1| putative protein;
protein id: At4g12670.1 [Arabidopsis thaliana]
Length = 520
Score = 62.0 bits (149), Expect = 1e-08
Identities = 29/57 (50%), Positives = 40/57 (69%), Gaps = 1/57 (1%)
Frame = +1
Query: 631 KRVLWTVNEEKMLR-GVEKFSDTINKNMPWKKILEMGKGIFHTTRNSSDLKDKWRNM 798
KR WT+ E +MLR GV+KF +N+PW+KIL+ G+ +FH R SDLKDKW+ +
Sbjct: 437 KRRFWTLAEVEMLRVGVQKFPG--ERNIPWRKILQFGRDVFHDERAPSDLKDKWKTL 491
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 123
effective length of database: 265,739,758
effective search space used: 51022033536
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)