BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01760.f
(978 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171681.1| double-stranded RNA-specific editase, puta... 649 0.0
gb|AAF78409.1|AC009273_15 Contains similarity to RNA adenos... 601 e-171
gb|EAA14688.1| agCP4711 [Anopheles gambiae str. PEST] 149 6e-35
gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio rerio]|... 146 4e-34
gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio]|... 146 4e-34
>ref|NP_171681.1| double-stranded RNA-specific editase, putative; protein id:
At1g01760.1 [Arabidopsis thaliana]
Length = 325
Score = 649 bits (1673), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Frame = +1
Query: 1 MEEDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSG 180
MEEDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSG
Sbjct: 1 MEEDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSG 60
Query: 181 SLLSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKKSADSSCPGEVKYKLKSGCL 360
SLLSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKKSADSSCPGEVKYKLKSGCL
Sbjct: 61 SLLSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKKSADSSCPGEVKYKLKSGCL 120
Query: 361 LHLYISQLPCNLPSILDDSLLVQASDICSSRHSDVPEIGSNSNKGNGSQVADMVQRKPGR 540
LHLYISQLPCNLPSILDDSLLVQASDICSSRHSDVPEIGSNSNKGNGSQVADMVQRKPGR
Sbjct: 121 LHLYISQLPCNLPSILDDSLLVQASDICSSRHSDVPEIGSNSNKGNGSQVADMVQRKPGR 180
Query: 541 GETTLSVSCSDKIARWNVLGVQGALLYQVLQPVYISTITVGQSLHSPDNFSLADHLRRSL 720
GETTLSVSCSDKIARWNVLGVQGALLYQVLQPVYISTITVGQSLHSPDNFSLADHLRRSL
Sbjct: 181 GETTLSVSCSDKIARWNVLGVQGALLYQVLQPVYISTITVGQSLHSPDNFSLADHLRRSL 240
Query: 721 YERILPLSDELLTSFRLNKPLFFVAPVPPSEFQHSETAQATLTCGYSLCWNYSGLHEVIL 900
YERILPLSDELLTSFRLNKPLFFVAPVPPSEFQHSETAQATLTCGYSLCWNYSGLHEVIL
Sbjct: 241 YERILPLSDELLTSFRLNKPLFFVAPVPPSEFQHSETAQATLTCGYSLCWNYSGLHEVIL 300
Query: 901 GTTGRKQGTSAKGALYPSTQSSICK 975
GTTGRKQGTSAKGALYPSTQSSICK
Sbjct: 301 GTTGRKQGTSAKGALYPSTQSSICK 325
>gb|AAF78409.1|AC009273_15 Contains similarity to RNA adenosine deaminase gene, exon 15 from
Homo sapiens gb|U75503. It contains the
adenosine-deaminase (editase) domain PF|02137.
[Arabidopsis thaliana]|gi|25513448|pir||B86149 T1N6.17
protein - Arabidopsis thaliana
Length = 435
Score = 601 bits (1549), Expect = e-171
Identities = 319/385 (82%), Positives = 321/385 (82%), Gaps = 60/385 (15%)
Frame = +1
Query: 1 MEEDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSG 180
MEEDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSG
Sbjct: 1 MEEDWGKTVSEKVISAYMSLPKKGKPQGREVTVLSAFLVSSPSQDPKVIALGTGTKCVSG 60
Query: 181 SLLSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGK-----------------KSA 309
SLLSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGK +SA
Sbjct: 61 SLLSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKSNEAKRQRIDSETSSILESA 120
Query: 310 DSSCPGEVKYKLKSGCLLHLYISQLPCNLPSI--------------LDDSLLVQASDICS 447
DSSCPGEVKYKLKSGCLLHLYISQLPC S +DDSLLVQASDICS
Sbjct: 121 DSSCPGEVKYKLKSGCLLHLYISQLPCGYASTSSPLYALKKIPSTQVDDSLLVQASDICS 180
Query: 448 SRHSDVPEIGSNSNKGNGSQVADMVQRKPGRGETTLSVSCSDKIARWNVLGVQGALLYQV 627
SRHSDVPEIGSNSNKGNGSQVADMVQRKPGRGETTLSVSCSDKIARWNVLGVQGALLYQV
Sbjct: 181 SRHSDVPEIGSNSNKGNGSQVADMVQRKPGRGETTLSVSCSDKIARWNVLGVQGALLYQV 240
Query: 628 LQPVYISTITVGQSLHSPDNFSLADHLRRSLYERILPLSDELLTSFRLNKPLFFVAPVPP 807
LQPVYISTITVGQSLHSPDNFSLADHLRRSLYERILPLSDELLTSFRLNKPLFFVAPVPP
Sbjct: 241 LQPVYISTITVGQSLHSPDNFSLADHLRRSLYERILPLSDELLTSFRLNKPLFFVAPVPP 300
Query: 808 SEFQHSETAQATLTCG-----------------------------YSLCWNYSGLHEVIL 900
SEFQHSETAQATLTCG YSLCWNYSGLHEVIL
Sbjct: 301 SEFQHSETAQATLTCGLVFNTLPHMTCVSFLCFLKGGVIYLLALRYSLCWNYSGLHEVIL 360
Query: 901 GTTGRKQGTSAKGALYPSTQSSICK 975
GTTGRKQGTSAKGALYPSTQSSICK
Sbjct: 361 GTTGRKQGTSAKGALYPSTQSSICK 385
>gb|EAA14688.1| agCP4711 [Anopheles gambiae str. PEST]
Length = 351
Score = 149 bits (376), Expect = 6e-35
Identities = 95/261 (36%), Positives = 141/261 (53%), Gaps = 41/261 (15%)
Frame = +1
Query: 1 MEEDWGKTVSEKVISAYMSLPKKGKP-QGREVTVLSAFLVSSP-----SQDPKVIALGTG 162
M+ + ++ + ++ + LPK GKP + E T+LSA ++ +P S D +V+ALGTG
Sbjct: 11 MDINLANRIARECLAQFAKLPKTGKPNESFEWTILSAIVLVTPAHHAASSDIRVVALGTG 70
Query: 163 TKCVSGSLLSPRGDIVNDSHAEVVARRALIRFFYSEIQRMQLTSGKKSADSSCPGEV--- 333
TKC+ G LSPRGD V+DSHAEV+ARRA +R+ Y +I++ L G + +S +
Sbjct: 71 TKCLPGDELSPRGDRVHDSHAEVLARRAFVRYLYEQIEQALLVEGGQPKESIFERQTVDG 130
Query: 334 ----KYKLKSGCLLHLYISQLPCNLPSIL---DDSLLV-----QASDICSSRHSDVPEIG 477
K+ LK+G H + + PC SI +D+LL + + CS R + +G
Sbjct: 131 GGCGKFVLKNGHSFHFFTTHSPCGDASIYKREEDALLPAKRARRTDEACSDRADEETTVG 190
Query: 478 -------------------SNSNKGNGSQVADMVQRKPGRGETTLSVSCSDKIARWNVLG 600
++ +Q V+ KPGRG T SVSCSDK+ARWNVLG
Sbjct: 191 CCIGEDRTAVGMTGGKLLDPEAHGDLMAQTIGAVRTKPGRGVRTASVSCSDKLARWNVLG 250
Query: 601 VQGALLYQVL-QPVYISTITV 660
VQG LL +L +P+Y+ + V
Sbjct: 251 VQGGLLMMLLGRPIYLDGVVV 271
>gb|AAL02180.1|AF403111_1 adenosine deaminase [Danio
rerio]|gi|15593024|gb|AAL02182.1|AF403113_1 adenosine
deaminase [Danio rerio]
Length = 689
Score = 146 bits (369), Expect = 4e-34
Identities = 111/327 (33%), Positives = 165/327 (49%), Gaps = 19/327 (5%)
Frame = +1
Query: 25 VSEKVISAYMSLPKK-GKPQGREVTVLSAFLVSSPS-QDPKVIALGTGTKCVSGSLLSPR 198
VS V+ + L P R + + + D +VI + TGTKC++G +S R
Sbjct: 315 VSRLVVDKFSELTDNFSSPHARRKVLAGVVMTTGKDVMDAQVICVTTGTKCINGEYMSDR 374
Query: 199 GDIVNDSHAEVVARRALIRFFYSEIQRMQLTS---GKKSADSSCPGEVKYKLKSGCLLHL 369
G +ND HAE++ARR+LIR+ Y++++ S +KS C E Y+LK HL
Sbjct: 375 GLALNDCHAEIIARRSLIRYLYNQLEYFLSDSTEEHEKSIFRWC-SEHGYRLKDDIQFHL 433
Query: 370 YISQLPCNLPSILDDSLLVQASDICSSRHSDVPEIGSNSNK---GNGS---QVADMVQRK 531
YIS PC I S ++ RH + G K G G+ + ++ +Q
Sbjct: 434 YISTSPCGDARIF--SPHEAGAEDQGDRHPNRKARGQLRTKIESGEGTIPVRTSNTIQTW 491
Query: 532 PG--RGETTLSVSCSDKIARWNVLGVQGALLYQVLQPVYISTITVGQSLHSPDNFSLADH 705
G +GE L++SCSDKIARWNV+GVQG+LL +P+Y S++ +G H ADH
Sbjct: 492 DGVLQGERLLTMSCSDKIARWNVIGVQGSLLSYFTEPIYFSSLILGSLYH-------ADH 544
Query: 706 LRRSLYERILPLSDELLTSFRLNKPLFFVAPVPPSEFQHSETAQATLTCGYSLCWNY--S 879
L R++Y+RI + D++ FR+N+PL S ++E Q +S+ W
Sbjct: 545 LSRAMYQRIADM-DDIPPPFRINRPLL-------SGISNTEARQPGKAPNFSVNWTVGDQ 596
Query: 880 GLHEVILGTTGR----KQGTSAKGALY 948
GL E+I TTG+ +Q K ALY
Sbjct: 597 GL-EIINATTGKHDLGRQSQLCKHALY 622
>gb|AAL02181.1|AF403112_1 adenosine deaminase [Danio rerio]|gi|15593015|gb|AAL02179.1|
adenosine deaminase [Danio
rerio]|gi|18858255|ref|NP_571685.1| adenosine deaminase,
RNA-specific, B1 [Danio rerio]
Length = 720
Score = 146 bits (369), Expect = 4e-34
Identities = 111/327 (33%), Positives = 165/327 (49%), Gaps = 19/327 (5%)
Frame = +1
Query: 25 VSEKVISAYMSLPKK-GKPQGREVTVLSAFLVSSPS-QDPKVIALGTGTKCVSGSLLSPR 198
VS V+ + L P R + + + D +VI + TGTKC++G +S R
Sbjct: 346 VSRLVVDKFSELTDNFSSPHARRKVLAGVVMTTGKDVMDAQVICVTTGTKCINGEYMSDR 405
Query: 199 GDIVNDSHAEVVARRALIRFFYSEIQRMQLTS---GKKSADSSCPGEVKYKLKSGCLLHL 369
G +ND HAE++ARR+LIR+ Y++++ S +KS C E Y+LK HL
Sbjct: 406 GLALNDCHAEIIARRSLIRYLYNQLEYFLSDSTEEHEKSIFRWC-SEHGYRLKDDIQFHL 464
Query: 370 YISQLPCNLPSILDDSLLVQASDICSSRHSDVPEIGSNSNK---GNGS---QVADMVQRK 531
YIS PC I S ++ RH + G K G G+ + ++ +Q
Sbjct: 465 YISTSPCGDARIF--SPHEAGAEDQGDRHPNRKARGQLRTKIESGEGTIPVRTSNTIQTW 522
Query: 532 PG--RGETTLSVSCSDKIARWNVLGVQGALLYQVLQPVYISTITVGQSLHSPDNFSLADH 705
G +GE L++SCSDKIARWNV+GVQG+LL +P+Y S++ +G H ADH
Sbjct: 523 DGVLQGERLLTMSCSDKIARWNVIGVQGSLLSYFTEPIYFSSLILGSLYH-------ADH 575
Query: 706 LRRSLYERILPLSDELLTSFRLNKPLFFVAPVPPSEFQHSETAQATLTCGYSLCWNY--S 879
L R++Y+RI + D++ FR+N+PL S ++E Q +S+ W
Sbjct: 576 LSRAMYQRIADM-DDIPPPFRINRPLL-------SGISNTEARQPGKAPNFSVNWTVGDQ 627
Query: 880 GLHEVILGTTGR----KQGTSAKGALY 948
GL E+I TTG+ +Q K ALY
Sbjct: 628 GL-EIINATTGKHDLGRQSQLCKHALY 653
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 123
effective length of database: 265,739,758
effective search space used: 53679431116
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)