BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01530.f
(744 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86145 F22L4.7 protein - Arabidopsis thaliana|gi|89205... 465 e-130
emb|CAA73304.1| MADS-box protein [Arabidopsis thaliana] 434 e-121
pir||T02359 hypothetical protein T8F5.14 - Arabidopsis thal... 274 8e-73
gb|AAO42470.1| putative MADS-box transcription factor [Arab... 210 1e-53
gb|AAO43321.1| putative MADS-box transcription factor [Arab... 202 5e-51
>pir||H86145 F22L4.7 protein - Arabidopsis
thaliana|gi|8920589|gb|AAF81311.1|AC061957_7 Contains
strong similarity (practically identical) to a MADS-box
protein from Arabidopsis thaliana gi|2505875 and
contains a SRF-type transcription factor (DNA-binding
and dimerisation) PF|00319
domain|gi|15223420|ref|NP_171660.1| MADS-box protein;
protein id: At1g01530.1 [Arabidopsis thaliana]
Length = 247
Score = 465 bits (1196), Expect = e-130
Identities = 230/247 (93%), Positives = 230/247 (93%)
Frame = +1
Query: 1 MARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAY 180
MARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAY
Sbjct: 1 MARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAY 60
Query: 181 SFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 360
SFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV
Sbjct: 61 SFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 120
Query: 361 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLNFYXXXXXX 540
QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLNFY
Sbjct: 121 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLNFYVGSSSN 180
Query: 541 XXXXXXXXXXXISTNHGFFDQNGNSTSAPTLPFGFNVMNRTPAGYNSYQLQNQEVKQVHP 720
ISTNHGFFDQNGNSTSAPTLPFGFNVMNRTPAGYNSYQLQNQEVKQVHP
Sbjct: 181 VAAPAAVSGGNISTNHGFFDQNGNSTSAPTLPFGFNVMNRTPAGYNSYQLQNQEVKQVHP 240
Query: 721 QYWARYY 741
QYWARYY
Sbjct: 241 QYWARYY 247
>emb|CAA73304.1| MADS-box protein [Arabidopsis thaliana]
Length = 244
Score = 434 bits (1117), Expect = e-121
Identities = 217/234 (92%), Positives = 217/234 (92%)
Frame = +1
Query: 1 MARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAY 180
MARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAY
Sbjct: 1 MARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAY 60
Query: 181 SFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 360
SFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV
Sbjct: 61 SFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 120
Query: 361 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLNFYXXXXXX 540
QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLNFY
Sbjct: 121 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLNFYVGSSSN 180
Query: 541 XXXXXXXXXXXISTNHGFFDQNGNSTSAPTLPFGFNVMNRTPAGYNSYQLQNQE 702
ISTNHGFFDQNGNSTSAPTLPFGFNVMNRTPAGYNSYQLQNQE
Sbjct: 181 VAAPAAVSGGNISTNHGFFDQNGNSTSAPTLPFGFNVMNRTPAGYNSYQLQNQE 234
>pir||T02359 hypothetical protein T8F5.14 - Arabidopsis
thaliana|gi|3335343|gb|AAC27145.1|AAC27145 Contains
similarity to gb|L46397 MADS box protein (ZAG3) from Zea
mays. [Arabidopsis
thaliana]|gi|15218647|ref|NP_176715.1| MADS-box protein;
protein id: At1g65360.1 [Arabidopsis thaliana]
Length = 226
Score = 274 bits (701), Expect = 8e-73
Identities = 142/224 (63%), Positives = 165/224 (73%), Gaps = 2/224 (0%)
Frame = +1
Query: 1 MARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAY 180
M +K LGRRK+E+VKMT ESNLQVTFSKR++GLFKK SE CTLCDA+IA+IVFSP+GK +
Sbjct: 1 MVKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVF 60
Query: 181 SFGHPNVNKLLDHSLGRVIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 360
SFGHPNV+ LLDH G V+ HNNTN ES TKL +QMLN+S TEV AE EKEQ+ KQS
Sbjct: 61 SFGHPNVDVLLDHFRGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRA 120
Query: 361 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL-HHRNLNFYXXXXX 537
QNEREN++AE+WW SP ELNL+QST M L+ LKK VDEK QL H N NFY
Sbjct: 121 QNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPNFYVGSSS 180
Query: 538 XXXXXXXXXXXXISTNHGFFDQNGNSTS-APTLPFGFNVMNRTP 666
ISTN GFFDQNG +T+ TL FGF++MNRTP
Sbjct: 181 NAAAPATVSGGNISTNQGFFDQNGMTTNPTQTLLFGFDIMNRTP 224
>gb|AAO42470.1| putative MADS-box transcription factor [Arabidopsis lyrata]
Length = 166
Score = 210 bits (535), Expect = 1e-53
Identities = 109/166 (65%), Positives = 117/166 (69%)
Frame = +1
Query: 94 GLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSLGRVIRHNNTNFAESRT 273
GLFKK SELCTLCDAEIAIIVFSPSGK YSFGHPNVN LLD RV+RHNNTN ES T
Sbjct: 1 GLFKKSSELCTLCDAEIAIIVFSPSGKVYSFGHPNVNVLLDQFSERVLRHNNTNLDESHT 60
Query: 274 KLRIQMLNESLTEVMAEKEKEQETKQSIVQNERENKDAEKWWRNSPTELNLAQSTSMKCD 453
KL IQMLNESLTE MAEKEKEQ K+ +VQNERE K+ E+WW NS ELNL Q TSMK
Sbjct: 61 KLHIQMLNESLTEAMAEKEKEQRKKEWLVQNEREIKNVEEWWTNSLKELNLTQLTSMKHA 120
Query: 454 LEALKKEVDEKVAQLHHRNLNFYXXXXXXXXXXXXXXXXXISTNHG 591
LE LKKEV+E+ + H N NFY ISTN G
Sbjct: 121 LEDLKKEVNERASLFHQSNSNFYVGSSSNAAAPEAVNGGNISTNQG 166
>gb|AAO43321.1| putative MADS-box transcription factor [Arabidopsis thaliana]
Length = 168
Score = 202 bits (513), Expect = 5e-51
Identities = 105/168 (62%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Frame = +1
Query: 94 GLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSLGRVIRHNNTNFAESRT 273
GLFKK SELCTLCDA+IA+IVFSP+GK +SFGHPNV+ LLDH G V+RHNNTN ES T
Sbjct: 1 GLFKKASELCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHFRGCVVRHNNTNLDESYT 60
Query: 274 KLRIQMLNESLTEVMAEKEKEQETKQSIVQNERENKDAEKWWRNSPTELNLAQSTSMKCD 453
KL +QMLN+S TEV AE EKEQ+ KQS QNEREN++AE+WW SP ELNL+QST M
Sbjct: 61 KLHVQMLNKSYTEVKAEVEKEQKNKQSRAQNERENENAEEWWSKSPLELNLSQSTCMIRV 120
Query: 454 LEALKKEVDEKVAQL-HHRNLNFYXXXXXXXXXXXXXXXXXISTNHGF 594
L+ LKK VDEK QL H N NFY ISTN GF
Sbjct: 121 LKDLKKIVDEKAIQLIHQTNPNFYVGSSSNAAAPATVSGGNISTNQGF 168
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.317 0.131 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 120
effective length of database: 269,782,897
effective search space used: 34262427919
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)