BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At1g01520.f
         (864 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF81310.1|AC061957_6  Contains similarity to a dehydroge...   590   e-168
ref|NP_171659.1|  myb family transcription factor; protein i...   590   e-168
emb|CAB80937.1|  putative myb-related DNA-binding protein [A...   332   4e-90
emb|CAA73305.1|  MYB-related protein [Arabidopsis thaliana]       289   3e-77
gb|AAM65227.1|  contains similarity to MYB-related DNA-bindi...   268   1e-70
>gb|AAF81310.1|AC061957_6 Contains similarity to a dehydrogenase from Arabidopsis thaliana
            gb|Y12776 and contains a D-isomer specific 2-hydroxyacid
            dehydrogenases PF|00389 and Myb-like DNA binding PF|00249
            domains.  ESTs gb|Z48385, gb|Z48386 come from this
            gene|gi|25517982|pir||G86145 F22L4.6 protein -
            Arabidopsis thaliana
          Length = 1284

 Score =  590 bits (1521), Expect = e-168
 Identities = 287/287 (100%), Positives = 287/287 (100%)
 Frame = +1

Query: 1    MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 180
            MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS
Sbjct: 998  MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 1057

Query: 181  RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 360
            RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP
Sbjct: 1058 RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 1117

Query: 361  PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV 540
            PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV
Sbjct: 1118 PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV 1177

Query: 541  IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT 720
            IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT
Sbjct: 1178 IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT 1237

Query: 721  TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS 861
            TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS
Sbjct: 1238 TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS 1284
>ref|NP_171659.1| myb family transcription factor; protein id: At1g01520.1
           [Arabidopsis thaliana]
          Length = 287

 Score =  590 bits (1521), Expect = e-168
 Identities = 287/287 (100%), Positives = 287/287 (100%)
 Frame = +1

Query: 1   MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 180
           MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS
Sbjct: 1   MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 60

Query: 181 RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 360
           RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP
Sbjct: 61  RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 120

Query: 361 PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV 540
           PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV
Sbjct: 121 PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV 180

Query: 541 IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT 720
           IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT
Sbjct: 181 IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT 240

Query: 721 TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS 861
           TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS
Sbjct: 241 TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS 287
>emb|CAB80937.1| putative myb-related DNA-binding protein [Arabidopsis
           thaliana]|gi|15234118|ref|NP_192037.1| myb family
           transcription factor; protein id: At4g01280.1
           [Arabidopsis thaliana]|gi|25371561|pir||G85016 probable
           myb-related DNA-binding protein [imported] - Arabidopsis
           thaliana
          Length = 285

 Score =  332 bits (851), Expect = 4e-90
 Identities = 177/289 (61%), Positives = 212/289 (73%), Gaps = 18/289 (6%)
 Frame = +1

Query: 46  MSLP---GFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKSRENWTEQEHDKF 216
           MSLP   GF ++P T  T         T+SF EDPT K+RKPYTI KSRENWT+QEHDKF
Sbjct: 1   MSLPSSDGFGSIPATGRT--------STVSFSEDPTTKIRKPYTIKKSRENWTDQEHDKF 52

Query: 217 LEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPPPRPKRKANHPYP 396
           LEALHLFDRDWKKI+AFVGSKTV+QIRSHAQKYFLKVQK+G  EHLPPPRPKRKA+HPYP
Sbjct: 53  LEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYFLKVQKSGANEHLPPPRPKRKASHPYP 112

Query: 397 QKAPK------FTLSSSNALFQHDYLYNTNS-----HPVISTTRKHGLVHCDVSIPSSVI 543
            KAPK         SS+  L +  YLY+++S     +  +  +      H   ++P  VI
Sbjct: 113 IKAPKNVAYTSLPSSSTLPLLEPGYLYSSDSKSLMGNQAVCASTSSSWNHESTNLPKPVI 172

Query: 544 K-EEFGVSENCCSTSS---SRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFD 711
           + EE GVS      ++     D +R R VT+ N++ESC KPHRV PNFAEVY+FIGSVFD
Sbjct: 173 EVEEPGVSATAPLPNNRCRQEDTERVRAVTKPNNEESCEKPHRVMPNFAEVYSFIGSVFD 232

Query: 712 PKTTGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNA 858
           P T+GH++RLK+MDPIN+ETVLLLM+NLSVNLTSPEF EQR+LISSY+A
Sbjct: 233 PNTSGHLQRLKQMDPINMETVLLLMQNLSVNLTSPEFAEQRRLISSYSA 281
>emb|CAA73305.1| MYB-related protein [Arabidopsis thaliana]
          Length = 162

 Score =  289 bits (740), Expect = 3e-77
 Identities = 137/137 (100%), Positives = 137/137 (100%)
 Frame = +1

Query: 1   MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 180
           MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS
Sbjct: 1   MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 60

Query: 181 RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 360
           RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP
Sbjct: 61  RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 120

Query: 361 PRPKRKANHPYPQKAPK 411
           PRPKRKANHPYPQKAPK
Sbjct: 121 PRPKRKANHPYPQKAPK 137
>gb|AAM65227.1| contains similarity to MYB-related DNA-binding protein [Arabidopsis
           thaliana]|gi|18423417|ref|NP_568776.1| myb family
           transcription factor; protein id: At5g52660.1, supported
           by cDNA: 37702. [Arabidopsis thaliana]
          Length = 330

 Score =  268 bits (684), Expect = 1e-70
 Identities = 149/307 (48%), Positives = 202/307 (65%), Gaps = 22/307 (7%)
 Frame = +1

Query: 1   MVTVNPSQAHCLPMKMSLPGF----------NTLPHTATT-IPVSIRSNRTMSFFEDPTK 147
           MV+ N       P  M++PG           ++ P T++T + V+  +    S  ED +K
Sbjct: 1   MVSRNSDGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEEDLSK 60

Query: 148 KVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKV 327
           K+RKPYTITKSRE+WTE EHDKFLEAL LFDRDWKKI+AF+GSKTVIQIRSHAQKYFLKV
Sbjct: 61  KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 120

Query: 328 QKNGTKEHLPPPRPKRKANHPYPQKAPK-------FTLSSSNALFQHDYLYNTNSHPVIS 486
           QK+GT EHLPPPRPKRKA HPYPQKA K        +  S++      +++   S  ++ 
Sbjct: 121 QKSGTGEHLPPPRPKRKAAHPYPQKAHKNVQLQVPGSFKSTSEPNDPSFMFRPESSSMLM 180

Query: 487 TTRKHGL----VHCDVSIPSSVIKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKP 654
           T+          +   +I  + + +  G + NC  +SSS +  R R   +  D  + G  
Sbjct: 181 TSPTTAAAAPWTNNAQTISFTPLPKGAGANNNC--SSSSENTPRPRSNRDARDHGNVGHS 238

Query: 655 HRVAPNFAEVYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQR 834
            RV P+FA+VY FIGSVFDP  + H+++LK+MDPI++ETVLLLM+NLS+NL+SP+F++ R
Sbjct: 239 LRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDHR 298

Query: 835 KLISSYN 855
           +L+SSY+
Sbjct: 299 RLLSSYD 305
  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 122
effective length of database: 267,087,471
effective search space used: 44069432715
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results