BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01520.f
(864 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF81310.1|AC061957_6 Contains similarity to a dehydroge... 590 e-168
ref|NP_171659.1| myb family transcription factor; protein i... 590 e-168
emb|CAB80937.1| putative myb-related DNA-binding protein [A... 332 4e-90
emb|CAA73305.1| MYB-related protein [Arabidopsis thaliana] 289 3e-77
gb|AAM65227.1| contains similarity to MYB-related DNA-bindi... 268 1e-70
>gb|AAF81310.1|AC061957_6 Contains similarity to a dehydrogenase from Arabidopsis thaliana
gb|Y12776 and contains a D-isomer specific 2-hydroxyacid
dehydrogenases PF|00389 and Myb-like DNA binding PF|00249
domains. ESTs gb|Z48385, gb|Z48386 come from this
gene|gi|25517982|pir||G86145 F22L4.6 protein -
Arabidopsis thaliana
Length = 1284
Score = 590 bits (1521), Expect = e-168
Identities = 287/287 (100%), Positives = 287/287 (100%)
Frame = +1
Query: 1 MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 180
MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS
Sbjct: 998 MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 1057
Query: 181 RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 360
RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP
Sbjct: 1058 RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 1117
Query: 361 PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV 540
PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV
Sbjct: 1118 PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV 1177
Query: 541 IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT 720
IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT
Sbjct: 1178 IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT 1237
Query: 721 TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS 861
TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS
Sbjct: 1238 TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS 1284
>ref|NP_171659.1| myb family transcription factor; protein id: At1g01520.1
[Arabidopsis thaliana]
Length = 287
Score = 590 bits (1521), Expect = e-168
Identities = 287/287 (100%), Positives = 287/287 (100%)
Frame = +1
Query: 1 MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 180
MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS
Sbjct: 1 MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 60
Query: 181 RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 360
RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP
Sbjct: 61 RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 120
Query: 361 PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV 540
PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV
Sbjct: 121 PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGLVHCDVSIPSSV 180
Query: 541 IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT 720
IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT
Sbjct: 181 IKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKT 240
Query: 721 TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS 861
TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS
Sbjct: 241 TGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS 287
>emb|CAB80937.1| putative myb-related DNA-binding protein [Arabidopsis
thaliana]|gi|15234118|ref|NP_192037.1| myb family
transcription factor; protein id: At4g01280.1
[Arabidopsis thaliana]|gi|25371561|pir||G85016 probable
myb-related DNA-binding protein [imported] - Arabidopsis
thaliana
Length = 285
Score = 332 bits (851), Expect = 4e-90
Identities = 177/289 (61%), Positives = 212/289 (73%), Gaps = 18/289 (6%)
Frame = +1
Query: 46 MSLP---GFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKSRENWTEQEHDKF 216
MSLP GF ++P T T T+SF EDPT K+RKPYTI KSRENWT+QEHDKF
Sbjct: 1 MSLPSSDGFGSIPATGRT--------STVSFSEDPTTKIRKPYTIKKSRENWTDQEHDKF 52
Query: 217 LEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPPPRPKRKANHPYP 396
LEALHLFDRDWKKI+AFVGSKTV+QIRSHAQKYFLKVQK+G EHLPPPRPKRKA+HPYP
Sbjct: 53 LEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYFLKVQKSGANEHLPPPRPKRKASHPYP 112
Query: 397 QKAPK------FTLSSSNALFQHDYLYNTNS-----HPVISTTRKHGLVHCDVSIPSSVI 543
KAPK SS+ L + YLY+++S + + + H ++P VI
Sbjct: 113 IKAPKNVAYTSLPSSSTLPLLEPGYLYSSDSKSLMGNQAVCASTSSSWNHESTNLPKPVI 172
Query: 544 K-EEFGVSENCCSTSS---SRDKQRTRIVTETNDQESCGKPHRVAPNFAEVYNFIGSVFD 711
+ EE GVS ++ D +R R VT+ N++ESC KPHRV PNFAEVY+FIGSVFD
Sbjct: 173 EVEEPGVSATAPLPNNRCRQEDTERVRAVTKPNNEESCEKPHRVMPNFAEVYSFIGSVFD 232
Query: 712 PKTTGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNA 858
P T+GH++RLK+MDPIN+ETVLLLM+NLSVNLTSPEF EQR+LISSY+A
Sbjct: 233 PNTSGHLQRLKQMDPINMETVLLLMQNLSVNLTSPEFAEQRRLISSYSA 281
>emb|CAA73305.1| MYB-related protein [Arabidopsis thaliana]
Length = 162
Score = 289 bits (740), Expect = 3e-77
Identities = 137/137 (100%), Positives = 137/137 (100%)
Frame = +1
Query: 1 MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 180
MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS
Sbjct: 1 MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS 60
Query: 181 RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 360
RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP
Sbjct: 61 RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP 120
Query: 361 PRPKRKANHPYPQKAPK 411
PRPKRKANHPYPQKAPK
Sbjct: 121 PRPKRKANHPYPQKAPK 137
>gb|AAM65227.1| contains similarity to MYB-related DNA-binding protein [Arabidopsis
thaliana]|gi|18423417|ref|NP_568776.1| myb family
transcription factor; protein id: At5g52660.1, supported
by cDNA: 37702. [Arabidopsis thaliana]
Length = 330
Score = 268 bits (684), Expect = 1e-70
Identities = 149/307 (48%), Positives = 202/307 (65%), Gaps = 22/307 (7%)
Frame = +1
Query: 1 MVTVNPSQAHCLPMKMSLPGF----------NTLPHTATT-IPVSIRSNRTMSFFEDPTK 147
MV+ N P M++PG ++ P T++T + V+ + S ED +K
Sbjct: 1 MVSRNSDGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEEDLSK 60
Query: 148 KVRKPYTITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKV 327
K+RKPYTITKSRE+WTE EHDKFLEAL LFDRDWKKI+AF+GSKTVIQIRSHAQKYFLKV
Sbjct: 61 KIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 120
Query: 328 QKNGTKEHLPPPRPKRKANHPYPQKAPK-------FTLSSSNALFQHDYLYNTNSHPVIS 486
QK+GT EHLPPPRPKRKA HPYPQKA K + S++ +++ S ++
Sbjct: 121 QKSGTGEHLPPPRPKRKAAHPYPQKAHKNVQLQVPGSFKSTSEPNDPSFMFRPESSSMLM 180
Query: 487 TTRKHGL----VHCDVSIPSSVIKEEFGVSENCCSTSSSRDKQRTRIVTETNDQESCGKP 654
T+ + +I + + + G + NC +SSS + R R + D + G
Sbjct: 181 TSPTTAAAAPWTNNAQTISFTPLPKGAGANNNC--SSSSENTPRPRSNRDARDHGNVGHS 238
Query: 655 HRVAPNFAEVYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQR 834
RV P+FA+VY FIGSVFDP + H+++LK+MDPI++ETVLLLM+NLS+NL+SP+F++ R
Sbjct: 239 LRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDHR 298
Query: 835 KLISSYN 855
+L+SSY+
Sbjct: 299 RLLSSYD 305
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 122
effective length of database: 267,087,471
effective search space used: 44069432715
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)