BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= At1g01410.f
         (1086 letters)

Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr 
           1,347,713 sequences; 431,508,457 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF97334.1|AC023628_15  Hypothetical protein [Arabidopsis...   714   0.0  
ref|NP_201254.1|  unknown protein; protein id: At5g64490.1 [...   152   6e-36
dbj|BAA96940.1|  contains similarity to unknown protein~gb|A...   140   3e-32
dbj|BAA97499.1|  gb|AAD41414.1~gene_id:F15L12.7~similar to u...   140   3e-32
ref|NP_200826.1|  pumilio-family RNA-binding protein, putati...   140   3e-32
>gb|AAF97334.1|AC023628_15 Hypothetical protein [Arabidopsis
            thaliana]|gi|15223395|ref|NP_171648.1| hypothetical
            protein; protein id: At1g01410.1 [Arabidopsis
            thaliana]|gi|25518609|pir||F86144 hypothetical protein
            F6F3.21 - Arabidopsis thaliana
          Length = 361

 Score =  714 bits (1844), Expect = 0.0
 Identities = 361/361 (100%), Positives = 361/361 (100%)
 Frame = +1

Query: 1    MTHERGYDLASQVLNICNVHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADDFLKDE 180
            MTHERGYDLASQVLNICNVHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADDFLKDE
Sbjct: 1    MTHERGYDLASQVLNICNVHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADDFLKDE 60

Query: 181  FLDLIAQHAHSLSMHDLGISLIQHVLELDFTKKTTQDDKRLHELMAEFDEVLSTSVTADV 360
            FLDLIAQHAHSLSMHDLGISLIQHVLELDFTKKTTQDDKRLHELMAEFDEVLSTSVTADV
Sbjct: 61   FLDLIAQHAHSLSMHDLGISLIQHVLELDFTKKTTQDDKRLHELMAEFDEVLSTSVTADV 120

Query: 361  DKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAGVKQRFIDVTTNFY 540
            DKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAGVKQRFIDVTTNFY
Sbjct: 121  DKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAGVKQRFIDVTTNFY 180

Query: 541  GYRIMIQTIKVFKKRGDLKVYDQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTF 720
            GYRIMIQTIKVFKKRGDLKVYDQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTF
Sbjct: 181  GYRIMIQTIKVFKKRGDLKVYDQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTF 240

Query: 721  IACGLQSHYIELSFLKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGN 900
            IACGLQSHYIELSFLKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGN
Sbjct: 241  IACGLQSHYIELSFLKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGN 300

Query: 901  NILKKFLALAKEHKEDFFGDLVDKLNPLLDSLRGTLGENIVAIIDSETEMVKDRIVSQGN 1080
            NILKKFLALAKEHKEDFFGDLVDKLNPLLDSLRGTLGENIVAIIDSETEMVKDRIVSQGN
Sbjct: 301  NILKKFLALAKEHKEDFFGDLVDKLNPLLDSLRGTLGENIVAIIDSETEMVKDRIVSQGN 360

Query: 1081 N 1083
            N
Sbjct: 361  N 361
>ref|NP_201254.1| unknown protein; protein id: At5g64490.1 [Arabidopsis
           thaliana]|gi|28393543|gb|AAO42192.1| unknown protein
           [Arabidopsis thaliana]|gi|10178230|dbj|BAB11610.1|
           gene_id:T12B11.8~unknown protein [Arabidopsis thaliana]
          Length = 187

 Score =  152 bits (385), Expect = 6e-36
 Identities = 89/182 (48%), Positives = 113/182 (61%)
 Frame = +1

Query: 253 VLELDFTKKTTQDDKRLHELMAEFDEVLSTSVTADVDKLHKLASKLMLDSDLFFEFVITR 432
           +L LDFT KTTQ   RLH +  EF       V+ DV +LHKL+SKL  D  LF EFV T 
Sbjct: 1   MLNLDFTHKTTQATPRLHAVATEF-----LRVSNDVAELHKLSSKLTSDPYLFVEFVKTI 55

Query: 433 RGSLMIQIILGKSEEVDQVILAGVKQRFIDVTTNFYGYRIMIQTIKVFKKRGDLKVYDQI 612
           RG L +Q  LG S E+D V L  +K  F D+ T  + + I+++ I +F KR + KVY  I
Sbjct: 56  RGFLSVQTALGLSGEIDTVFLQVIKGWFPDLITETFSFLIVVRIINLFNKRANSKVYPDI 115

Query: 613 LRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSFLKHGSKIVEM 792
           LR IG +ALYLT++P  G    + AIN+   DCT FIA  L SHY+ELSF + GS IVE 
Sbjct: 116 LRRIGNNALYLTRNPLRGICLVEKAINVRDPDCTVFIALKLHSHYVELSFEELGSNIVEK 175

Query: 793 LI 798
           L+
Sbjct: 176 LL 177
>dbj|BAA96940.1| contains similarity to unknown protein~gb|AAD41414.1~gene_id:MGO3.9
            [Arabidopsis thaliana]|gi|15238618|ref|NP_200819.1|
            pumilio-family RNA-binding protein, putative; protein id:
            At5g60110.1 [Arabidopsis thaliana]
          Length = 327

 Score =  140 bits (354), Expect = 3e-32
 Identities = 97/272 (35%), Positives = 138/272 (50%), Gaps = 33/272 (12%)
 Frame = +1

Query: 322  FDEVLSTSVTADVDKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAG 501
            F E++S S   D  +L ++AS L  DSD F   V T+ GS  +Q +LGKS++VD    A 
Sbjct: 58   FKEMISNS---DKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDVDAFFCAA 114

Query: 502  VKQRFIDVTTNFYGYRIMIQTIKVFKKRGDLKVY-------------------------- 603
            + +RF+ +TT+ Y   + I+ + VF K     +Y                          
Sbjct: 115  ILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDIITD 174

Query: 604  -------DQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSF 762
                   DQ+L L+  +AL L+ D   GN   QH + L+   C   IA  L    IELSF
Sbjct: 175  ADDPYYRDQLLELVASNALRLSNDAS-GNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSF 233

Query: 763  LKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLALAKEHK 942
             K+GS IVE L++   SMV +V+   E++ CD D L+RLA +E+GN ++ K L   K  +
Sbjct: 234  KKYGSYIVEKLLEVEESMVVVVV---ELLGCDGDRLMRLARNEFGNFVVVKALRFTKMSR 290

Query: 943  EDFFGDLVDKLNPLLDSLRGTLGENIVAIIDS 1038
             D F  LV KL P +  LR + G NI  I+DS
Sbjct: 291  MDLFWGLVQKLMPFIRLLRRSHGSNIANILDS 322

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
 Frame = +1

Query: 55  VHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADD-FLKDEFLDLIAQHAHSLSMHDL 231
           V  K L+  I Y H L L+ D +GC+ L  +IT ADD + +D+ L+L+A +A  LS    
Sbjct: 142 VMKKALYERILY-HALDLACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDAS 200

Query: 232 GISLIQHVLEL 264
           G  ++QHVL L
Sbjct: 201 GNFVVQHVLTL 211
>dbj|BAA97499.1| gb|AAD41414.1~gene_id:F15L12.7~similar to unknown protein
            [Arabidopsis thaliana]
          Length = 315

 Score =  140 bits (354), Expect = 3e-32
 Identities = 97/272 (35%), Positives = 139/272 (50%), Gaps = 33/272 (12%)
 Frame = +1

Query: 322  FDEVLSTSVTADVDKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAG 501
            F E++S S   D  +L ++AS L  DSD F   V T+ GS  +Q +LGKS++VD    A 
Sbjct: 46   FKEMISKS---DKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDVDAFFCAA 102

Query: 502  VKQRFIDVTTNFYGYRIMIQTIKVFKKRGDLKVY-------------------------- 603
            + +RF+ +TT+ Y   + I+ + VF K     +Y                          
Sbjct: 103  ILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDIITD 162

Query: 604  -------DQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSF 762
                   DQ+L L+  +AL L+ D   GN   QH + L+   C   IA  L    IELSF
Sbjct: 163  ADDPYYRDQLLELVVSNALRLSNDAS-GNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSF 221

Query: 763  LKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLALAKEHK 942
             K+GS IVE L++   SMV +V+   E++ CD D L+RLA +E+GN ++ K L   KE +
Sbjct: 222  KKYGSYIVEKLLEVEESMVVVVV---ELLGCDGDRLMRLARNEFGNFVVVKALRFTKEMR 278

Query: 943  EDFFGDLVDKLNPLLDSLRGTLGENIVAIIDS 1038
             D F  LV KL P +  LR + G NI  I+D+
Sbjct: 279  MDLFWGLVQKLMPFIHLLRRSHGNNIANILDT 310

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 29/71 (40%), Positives = 42/71 (58%), Gaps = 1/71 (1%)
 Frame = +1

Query: 55  VHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADD-FLKDEFLDLIAQHAHSLSMHDL 231
           V  K L+  I Y H L L+ D +GC+ L  +IT ADD + +D+ L+L+  +A  LS    
Sbjct: 130 VMKKALYERILY-HALDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDAS 188

Query: 232 GISLIQHVLEL 264
           G  ++QHVL L
Sbjct: 189 GNFVVQHVLTL 199
>ref|NP_200826.1| pumilio-family RNA-binding protein, putative; protein id: At5g60180.1
            [Arabidopsis thaliana]
          Length = 327

 Score =  140 bits (354), Expect = 3e-32
 Identities = 97/272 (35%), Positives = 139/272 (50%), Gaps = 33/272 (12%)
 Frame = +1

Query: 322  FDEVLSTSVTADVDKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAG 501
            F E++S S   D  +L ++AS L  DSD F   V T+ GS  +Q +LGKS++VD    A 
Sbjct: 58   FKEMISKS---DKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDVDAFFCAA 114

Query: 502  VKQRFIDVTTNFYGYRIMIQTIKVFKKRGDLKVY-------------------------- 603
            + +RF+ +TT+ Y   + I+ + VF K     +Y                          
Sbjct: 115  ILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDIITD 174

Query: 604  -------DQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSF 762
                   DQ+L L+  +AL L+ D   GN   QH + L+   C   IA  L    IELSF
Sbjct: 175  ADDPYYRDQLLELVVSNALRLSNDAS-GNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSF 233

Query: 763  LKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLALAKEHK 942
             K+GS IVE L++   SMV +V+   E++ CD D L+RLA +E+GN ++ K L   KE +
Sbjct: 234  KKYGSYIVEKLLEVEESMVVVVV---ELLGCDGDRLMRLARNEFGNFVVVKALRFTKEMR 290

Query: 943  EDFFGDLVDKLNPLLDSLRGTLGENIVAIIDS 1038
             D F  LV KL P +  LR + G NI  I+D+
Sbjct: 291  MDLFWGLVQKLMPFIHLLRRSHGNNIANILDT 322

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 29/71 (40%), Positives = 42/71 (58%), Gaps = 1/71 (1%)
 Frame = +1

Query: 55  VHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADD-FLKDEFLDLIAQHAHSLSMHDL 231
           V  K L+  I Y H L L+ D +GC+ L  +IT ADD + +D+ L+L+  +A  LS    
Sbjct: 142 VMKKALYERILY-HALDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDAS 200

Query: 232 GISLIQHVLEL 264
           G  ++QHVL L
Sbjct: 201 GNFVVQHVLTL 211
  Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
    Posted date:  Feb 27, 2003  4:02 PM
  Number of letters in database: 431,508,457
  Number of sequences in database:  1,347,713
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 124
effective length of database: 264,392,045
effective search space used: 62660914665
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results