BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01410.f
(1086 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF97334.1|AC023628_15 Hypothetical protein [Arabidopsis... 714 0.0
ref|NP_201254.1| unknown protein; protein id: At5g64490.1 [... 152 6e-36
dbj|BAA96940.1| contains similarity to unknown protein~gb|A... 140 3e-32
dbj|BAA97499.1| gb|AAD41414.1~gene_id:F15L12.7~similar to u... 140 3e-32
ref|NP_200826.1| pumilio-family RNA-binding protein, putati... 140 3e-32
>gb|AAF97334.1|AC023628_15 Hypothetical protein [Arabidopsis
thaliana]|gi|15223395|ref|NP_171648.1| hypothetical
protein; protein id: At1g01410.1 [Arabidopsis
thaliana]|gi|25518609|pir||F86144 hypothetical protein
F6F3.21 - Arabidopsis thaliana
Length = 361
Score = 714 bits (1844), Expect = 0.0
Identities = 361/361 (100%), Positives = 361/361 (100%)
Frame = +1
Query: 1 MTHERGYDLASQVLNICNVHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADDFLKDE 180
MTHERGYDLASQVLNICNVHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADDFLKDE
Sbjct: 1 MTHERGYDLASQVLNICNVHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADDFLKDE 60
Query: 181 FLDLIAQHAHSLSMHDLGISLIQHVLELDFTKKTTQDDKRLHELMAEFDEVLSTSVTADV 360
FLDLIAQHAHSLSMHDLGISLIQHVLELDFTKKTTQDDKRLHELMAEFDEVLSTSVTADV
Sbjct: 61 FLDLIAQHAHSLSMHDLGISLIQHVLELDFTKKTTQDDKRLHELMAEFDEVLSTSVTADV 120
Query: 361 DKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAGVKQRFIDVTTNFY 540
DKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAGVKQRFIDVTTNFY
Sbjct: 121 DKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAGVKQRFIDVTTNFY 180
Query: 541 GYRIMIQTIKVFKKRGDLKVYDQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTF 720
GYRIMIQTIKVFKKRGDLKVYDQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTF
Sbjct: 181 GYRIMIQTIKVFKKRGDLKVYDQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTF 240
Query: 721 IACGLQSHYIELSFLKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGN 900
IACGLQSHYIELSFLKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGN
Sbjct: 241 IACGLQSHYIELSFLKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGN 300
Query: 901 NILKKFLALAKEHKEDFFGDLVDKLNPLLDSLRGTLGENIVAIIDSETEMVKDRIVSQGN 1080
NILKKFLALAKEHKEDFFGDLVDKLNPLLDSLRGTLGENIVAIIDSETEMVKDRIVSQGN
Sbjct: 301 NILKKFLALAKEHKEDFFGDLVDKLNPLLDSLRGTLGENIVAIIDSETEMVKDRIVSQGN 360
Query: 1081 N 1083
N
Sbjct: 361 N 361
>ref|NP_201254.1| unknown protein; protein id: At5g64490.1 [Arabidopsis
thaliana]|gi|28393543|gb|AAO42192.1| unknown protein
[Arabidopsis thaliana]|gi|10178230|dbj|BAB11610.1|
gene_id:T12B11.8~unknown protein [Arabidopsis thaliana]
Length = 187
Score = 152 bits (385), Expect = 6e-36
Identities = 89/182 (48%), Positives = 113/182 (61%)
Frame = +1
Query: 253 VLELDFTKKTTQDDKRLHELMAEFDEVLSTSVTADVDKLHKLASKLMLDSDLFFEFVITR 432
+L LDFT KTTQ RLH + EF V+ DV +LHKL+SKL D LF EFV T
Sbjct: 1 MLNLDFTHKTTQATPRLHAVATEF-----LRVSNDVAELHKLSSKLTSDPYLFVEFVKTI 55
Query: 433 RGSLMIQIILGKSEEVDQVILAGVKQRFIDVTTNFYGYRIMIQTIKVFKKRGDLKVYDQI 612
RG L +Q LG S E+D V L +K F D+ T + + I+++ I +F KR + KVY I
Sbjct: 56 RGFLSVQTALGLSGEIDTVFLQVIKGWFPDLITETFSFLIVVRIINLFNKRANSKVYPDI 115
Query: 613 LRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSFLKHGSKIVEM 792
LR IG +ALYLT++P G + AIN+ DCT FIA L SHY+ELSF + GS IVE
Sbjct: 116 LRRIGNNALYLTRNPLRGICLVEKAINVRDPDCTVFIALKLHSHYVELSFEELGSNIVEK 175
Query: 793 LI 798
L+
Sbjct: 176 LL 177
>dbj|BAA96940.1| contains similarity to unknown protein~gb|AAD41414.1~gene_id:MGO3.9
[Arabidopsis thaliana]|gi|15238618|ref|NP_200819.1|
pumilio-family RNA-binding protein, putative; protein id:
At5g60110.1 [Arabidopsis thaliana]
Length = 327
Score = 140 bits (354), Expect = 3e-32
Identities = 97/272 (35%), Positives = 138/272 (50%), Gaps = 33/272 (12%)
Frame = +1
Query: 322 FDEVLSTSVTADVDKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAG 501
F E++S S D +L ++AS L DSD F V T+ GS +Q +LGKS++VD A
Sbjct: 58 FKEMISNS---DKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDVDAFFCAA 114
Query: 502 VKQRFIDVTTNFYGYRIMIQTIKVFKKRGDLKVY-------------------------- 603
+ +RF+ +TT+ Y + I+ + VF K +Y
Sbjct: 115 ILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDIITD 174
Query: 604 -------DQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSF 762
DQ+L L+ +AL L+ D GN QH + L+ C IA L IELSF
Sbjct: 175 ADDPYYRDQLLELVASNALRLSNDAS-GNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSF 233
Query: 763 LKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLALAKEHK 942
K+GS IVE L++ SMV +V+ E++ CD D L+RLA +E+GN ++ K L K +
Sbjct: 234 KKYGSYIVEKLLEVEESMVVVVV---ELLGCDGDRLMRLARNEFGNFVVVKALRFTKMSR 290
Query: 943 EDFFGDLVDKLNPLLDSLRGTLGENIVAIIDS 1038
D F LV KL P + LR + G NI I+DS
Sbjct: 291 MDLFWGLVQKLMPFIRLLRRSHGSNIANILDS 322
Score = 50.1 bits (118), Expect = 6e-05
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +1
Query: 55 VHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADD-FLKDEFLDLIAQHAHSLSMHDL 231
V K L+ I Y H L L+ D +GC+ L +IT ADD + +D+ L+L+A +A LS
Sbjct: 142 VMKKALYERILY-HALDLACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLSNDAS 200
Query: 232 GISLIQHVLEL 264
G ++QHVL L
Sbjct: 201 GNFVVQHVLTL 211
>dbj|BAA97499.1| gb|AAD41414.1~gene_id:F15L12.7~similar to unknown protein
[Arabidopsis thaliana]
Length = 315
Score = 140 bits (354), Expect = 3e-32
Identities = 97/272 (35%), Positives = 139/272 (50%), Gaps = 33/272 (12%)
Frame = +1
Query: 322 FDEVLSTSVTADVDKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAG 501
F E++S S D +L ++AS L DSD F V T+ GS +Q +LGKS++VD A
Sbjct: 46 FKEMISKS---DKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDVDAFFCAA 102
Query: 502 VKQRFIDVTTNFYGYRIMIQTIKVFKKRGDLKVY-------------------------- 603
+ +RF+ +TT+ Y + I+ + VF K +Y
Sbjct: 103 ILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDIITD 162
Query: 604 -------DQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSF 762
DQ+L L+ +AL L+ D GN QH + L+ C IA L IELSF
Sbjct: 163 ADDPYYRDQLLELVVSNALRLSNDAS-GNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSF 221
Query: 763 LKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLALAKEHK 942
K+GS IVE L++ SMV +V+ E++ CD D L+RLA +E+GN ++ K L KE +
Sbjct: 222 KKYGSYIVEKLLEVEESMVVVVV---ELLGCDGDRLMRLARNEFGNFVVVKALRFTKEMR 278
Query: 943 EDFFGDLVDKLNPLLDSLRGTLGENIVAIIDS 1038
D F LV KL P + LR + G NI I+D+
Sbjct: 279 MDLFWGLVQKLMPFIHLLRRSHGNNIANILDT 310
Score = 48.5 bits (114), Expect = 2e-04
Identities = 29/71 (40%), Positives = 42/71 (58%), Gaps = 1/71 (1%)
Frame = +1
Query: 55 VHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADD-FLKDEFLDLIAQHAHSLSMHDL 231
V K L+ I Y H L L+ D +GC+ L +IT ADD + +D+ L+L+ +A LS
Sbjct: 130 VMKKALYERILY-HALDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDAS 188
Query: 232 GISLIQHVLEL 264
G ++QHVL L
Sbjct: 189 GNFVVQHVLTL 199
>ref|NP_200826.1| pumilio-family RNA-binding protein, putative; protein id: At5g60180.1
[Arabidopsis thaliana]
Length = 327
Score = 140 bits (354), Expect = 3e-32
Identities = 97/272 (35%), Positives = 139/272 (50%), Gaps = 33/272 (12%)
Frame = +1
Query: 322 FDEVLSTSVTADVDKLHKLASKLMLDSDLFFEFVITRRGSLMIQIILGKSEEVDQVILAG 501
F E++S S D +L ++AS L DSD F V T+ GS +Q +LGKS++VD A
Sbjct: 58 FKEMISKS---DKTELQRMASLLTSDSDYFMSIVTTKFGSRRVQKLLGKSDDVDAFFCAA 114
Query: 502 VKQRFIDVTTNFYGYRIMIQTIKVFKKRGDLKVY-------------------------- 603
+ +RF+ +TT+ Y + I+ + VF K +Y
Sbjct: 115 ILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHGCIALNDIITD 174
Query: 604 -------DQILRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSF 762
DQ+L L+ +AL L+ D GN QH + L+ C IA L IELSF
Sbjct: 175 ADDPYYRDQLLELVVSNALRLSNDAS-GNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSF 233
Query: 763 LKHGSKIVEMLIDDRISMVPLVLLMMEIVKCDEDTLVRLATDEYGNNILKKFLALAKEHK 942
K+GS IVE L++ SMV +V+ E++ CD D L+RLA +E+GN ++ K L KE +
Sbjct: 234 KKYGSYIVEKLLEVEESMVVVVV---ELLGCDGDRLMRLARNEFGNFVVVKALRFTKEMR 290
Query: 943 EDFFGDLVDKLNPLLDSLRGTLGENIVAIIDS 1038
D F LV KL P + LR + G NI I+D+
Sbjct: 291 MDLFWGLVQKLMPFIHLLRRSHGNNIANILDT 322
Score = 48.5 bits (114), Expect = 2e-04
Identities = 29/71 (40%), Positives = 42/71 (58%), Gaps = 1/71 (1%)
Frame = +1
Query: 55 VHHKKLFCHITYRHLLVLSSDDNGCVILKKVITIADD-FLKDEFLDLIAQHAHSLSMHDL 231
V K L+ I Y H L L+ D +GC+ L +IT ADD + +D+ L+L+ +A LS
Sbjct: 142 VMKKALYERILY-HALDLACDQHGCIALNDIITDADDPYYRDQLLELVVSNALRLSNDAS 200
Query: 232 GISLIQHVLEL 264
G ++QHVL L
Sbjct: 201 GNFVVQHVLTL 211
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 124
effective length of database: 264,392,045
effective search space used: 62660914665
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)