BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01030.f
(1077 letters)
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
1,347,713 sequences; 431,508,457 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171611.1| DNA-binding protein, putative; protein id:... 583 e-165
gb|AAM15018.1| putative RAV-like B3 domain DNA binding prot... 238 9e-62
pir||T01944 hypothetical protein F11O4.9 - Arabidopsis thal... 228 9e-59
gb|AAM67302.1| RAV-like protein [Arabidopsis thaliana] 215 1e-54
pir||T47989 RAV-like protein - Arabidopsis thaliana|gi|6899... 213 4e-54
>ref|NP_171611.1| DNA-binding protein, putative; protein id: At1g01030.1 [Arabidopsis
thaliana]|gi|25406713|pir||B86141 protein T25K16.3
[imported] - Arabidopsis
thaliana|gi|6715649|gb|AAF26476.1|AC007323_17 T25K16.3
[Arabidopsis thaliana]
Length = 358
Score = 583 bits (1504), Expect = e-165
Identities = 293/358 (81%), Positives = 293/358 (81%)
Frame = +1
Query: 1 MDLSLAPTTTTSSDQEQDRDQELTXXXXXXXXXXXXXXXXXXXXXXXXXXEKEHMFDKVV 180
MDLSLAPTTTTSSDQEQDRDQELT EKEHMFDKVV
Sbjct: 1 MDLSLAPTTTTSSDQEQDRDQELTSNIGASSSSGPSGNNNNLPMMMIPPPEKEHMFDKVV 60
Query: 181 TPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVM 360
TPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVM
Sbjct: 61 TPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVM 120
Query: 361 TKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLVQAHQXXXXXXXXX 540
TKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLVQAHQ
Sbjct: 121 TKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLVQAHQFGNFGFNFN 180
Query: 541 XPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYGNLAGRCYYTGS 720
PTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYGNLAGRCYYTGS
Sbjct: 181 FPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYGNLAGRCYYTGS 240
Query: 721 PLDHRNIVGSEPLVIDSVPVVPGRLTPVMXXXXXXXXSTAGKRLRLFGVNMECGNDYNQQ 900
PLDHRNIVGSEPLVIDSVPVVPGRLTPVM STAGKRLRLFGVNMECGNDYNQQ
Sbjct: 241 PLDHRNIVGSEPLVIDSVPVVPGRLTPVMLPPLPPPPSTAGKRLRLFGVNMECGNDYNQQ 300
Query: 901 EESWLVPRGEIGAXXXXXXALRLNLSTXXXXXXXXXXXXXXXQFAKKGKSSLSLNFNP 1074
EESWLVPRGEIGA ALRLNLST QFAKKGKSSLSLNFNP
Sbjct: 301 EESWLVPRGEIGASSSSSSALRLNLSTDHDDDNDDGDDGDDDQFAKKGKSSLSLNFNP 358
>gb|AAM15018.1| putative RAV-like B3 domain DNA binding protein [Arabidopsis
thaliana]|gi|7485494|pir||T02200 probable RAV-like B3
domain DNA binding protein [imported] - Arabidopsis
thaliana|gi|3522951|gb|AAC34233.1| putative RAV-like B3
domain DNA binding protein [Arabidopsis
thaliana]|gi|18407193|ref|NP_566089.1| putative RAV-like
B3 domain DNA binding protein; protein id: At2g46870.1
[Arabidopsis thaliana]|gi|26451145|dbj|BAC42676.1|
putative RAV-like B3 domain DNA binding protein
[Arabidopsis thaliana]
Length = 310
Score = 238 bits (608), Expect = 9e-62
Identities = 157/324 (48%), Positives = 185/324 (56%), Gaps = 17/324 (5%)
Frame = +1
Query: 151 EKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYS 330
++EHMFDKVVTPSDVGKLNRLVIPKQHAER+FPLDSS+N+ G LLNF+D GK WRFRYS
Sbjct: 30 DREHMFDKVVTPSDVGKLNRLVIPKQHAERFFPLDSSSNEKGLLLNFEDLTGKSWRFRYS 89
Query: 331 YWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLVQAH 510
YWNSSQSYVMTKGWSRFVK+KKLDAGDIVSFQR +GD S+L+IDWR RP V H
Sbjct: 90 YWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCVGDSGRDSRLFIDWRRRPK---VPDH 146
Query: 511 QXXXXXXXXXXPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYGYG- 687
RF+ P N ++ NHQ+ QR G GY
Sbjct: 147 PHFAAGAMF---------PRFYSFPSTN-------YSLYNHQQ-----QRHHHSGGGYNY 185
Query: 688 ----NLAGRCYYTGSPLDHRN---IVGSEPLVIDSVPV-VPGRLTPVMXXXXXXXXSTAG 843
G Y+ S +D RN ++PLVI+SVPV + GR + TAG
Sbjct: 186 HQIPREFGYGYFVRS-VDQRNNPAAAVADPLVIESVPVMMHGRANQEL-------VGTAG 237
Query: 844 KRLRLFGVNMECGND---YNQQEES----WLVPR-GEIGAXXXXXXALRLNLSTXXXXXX 999
KRLRLFGV+MECG + +EES +PR G GA LRL S+
Sbjct: 238 KRLRLFGVDMECGESGMTNSTEEESSSSGGSLPRGGGGGASSSSFFQLRLGSSS------ 291
Query: 1000 XXXXXXXXXQFAKKGKSSLSLNFN 1071
F KKGKSSLS + +
Sbjct: 292 ------EDDHFTKKGKSSLSFDLD 309
>pir||T01944 hypothetical protein F11O4.9 - Arabidopsis
thaliana|gi|3695373|gb|AAC62776.1| contains similarity
to Arabidopsis thaliana AP2 domain containing protein
RAP2.8 (GB:AF003101)|gi|7268193|emb|CAB77720.1| putative
DNA-binding protein [Arabidopsis
thaliana]|gi|15234209|ref|NP_192059.1| putative
DNA-binding protein; protein id: At4g01500.1
[Arabidopsis thaliana]
Length = 328
Score = 228 bits (582), Expect = 9e-59
Identities = 140/256 (54%), Positives = 168/256 (64%), Gaps = 15/256 (5%)
Frame = +1
Query: 154 KEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSY 333
+EHMFDKV+TPSDVGKLNRLVIPKQHAE +FPL+ +NQNGT+L+FQD+NGKMWRFRYSY
Sbjct: 27 REHMFDKVLTPSDVGKLNRLVIPKQHAENFFPLE--DNQNGTVLDFQDKNGKMWRFRYSY 84
Query: 334 WNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRG-IGD-----ESERSKLYIDWRHRPDMS 495
WNSSQSYVMTKGWSRFVKEKKL AGD VSF RG I D E R ++IDWR R +++
Sbjct: 85 WNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYRGYIPDDNAQPERRRKIMFIDWRPRAEIN 144
Query: 496 LVQAHQXXXXXXXXXXPTTSQYSNRFHPL-PEYNSVPIHRGLNIGNHQRSYYNT-QRQEF 669
V H PT + RF+P+ PEY S+P + Y N Q +E+
Sbjct: 145 FV--HNINNHNFVFGSPTYP--TARFYPVTPEY-SMPYR------SFPPFYQNQFQEREY 193
Query: 670 VGYGYGNLA---GRCYYTGSPLDHR---NIVGSEPLVIDSVPVVP-GRLTPVMXXXXXXX 828
+GYGYG + G YY GSPLD N+ SEPLV DSVPV P GR+ P
Sbjct: 194 LGYGYGRVVNGNGVRYYAGSPLDQHHQWNLGRSEPLVYDSVPVFPAGRVPP-----SAPP 248
Query: 829 XSTAGKRLRLFGVNME 876
+ K+LRLFGV++E
Sbjct: 249 QPSTTKKLRLFGVDVE 264
>gb|AAM67302.1| RAV-like protein [Arabidopsis thaliana]
Length = 283
Score = 215 bits (547), Expect = 1e-54
Identities = 144/322 (44%), Positives = 170/322 (52%), Gaps = 15/322 (4%)
Frame = +1
Query: 151 EKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSS---NNQNGTLLNFQDRNGKMWRF 321
E+EHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLD+S ++ G LLNF+DR+G WRF
Sbjct: 2 EREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRF 61
Query: 322 RYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLV 501
RYSYWNSSQSYVMTKGWSRFVK+KKLDAGDIVSFQR D + KLYIDWR RP +
Sbjct: 62 RYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR---DSCNKDKLYIDWRRRPKIPDH 118
Query: 502 QAHQXXXXXXXXXXPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYG 681
Q RF+ P H + + Y+ Q +G G
Sbjct: 119 HHQQFAGAMF-----------PRFYTFP-------HPQMPTNYETHNLYHRFHQRDLGIG 160
Query: 682 YGNLAGRCYYTGSPLDHRNIVGSEP-LVIDSVPVVPGRLTPVMXXXXXXXXSTAGKRLRL 858
YY R++ S P VI+SVPV+ R V S KRLRL
Sbjct: 161 --------YYV------RSMERSHPTAVIESVPVIMQRRAQV-----ASMASRGEKRLRL 201
Query: 859 FGVNMEC---GNDYNQQEE-----SWLVPRGEIGAXXXXXXALRLNLSTXXXXXXXXXXX 1014
FGV+MEC G N EE +PRG + + L+L L +
Sbjct: 202 FGVDMECGGGGGSVNSTEEESSSSGGSMPRGRV-SMVGAGSLLQLRLVSSDDESLVAMEA 260
Query: 1015 XXXXQ---FAKKGKSSLSLNFN 1071
F KKGKSSLS + +
Sbjct: 261 ASLEDHHFFTKKGKSSLSFDLD 282
>pir||T47989 RAV-like protein - Arabidopsis thaliana|gi|6899895|emb|CAB71904.1|
RAV-like protein [Arabidopsis
thaliana]|gi|15228649|ref|NP_191756.1| RAV-like protein;
protein id: At3g61970.1, supported by cDNA: 13757.
[Arabidopsis thaliana]
Length = 299
Score = 213 bits (542), Expect = 4e-54
Identities = 143/322 (44%), Positives = 169/322 (52%), Gaps = 15/322 (4%)
Frame = +1
Query: 151 EKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSS---NNQNGTLLNFQDRNGKMWRF 321
E+EHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLD+S ++ G LLNF+DR+G WRF
Sbjct: 18 EREHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNKGLLLNFEDRSGNSWRF 77
Query: 322 RYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLV 501
RYSYWNSSQSYVMTKGWSRFVK+KKLDAGDIVSFQR D + KLYIDWR RP +
Sbjct: 78 RYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR---DSCNKDKLYIDWRRRPKIPDH 134
Query: 502 QAHQXXXXXXXXXXPTTSQYSNRFHPLPEYNSVPIHRGLNIGNHQRSYYNTQRQEFVGYG 681
Q RF+ P H + + Y+ Q +G G
Sbjct: 135 HHQQFAGAMF-----------PRFYTFP-------HPQMPTNYETHNLYHRFHQRDLGIG 176
Query: 682 YGNLAGRCYYTGSPLDHRNIVGSEP-LVIDSVPVVPGRLTPVMXXXXXXXXSTAGKRLRL 858
YY R++ S P VI+SVPV+ R V S KRLRL
Sbjct: 177 --------YYV------RSMERSHPTAVIESVPVMMQRRAQV-----ASMASRGEKRLRL 217
Query: 859 FGVNMEC---GNDYNQQEE-----SWLVPRGEIGAXXXXXXALRLNLSTXXXXXXXXXXX 1014
FGV+MEC G N EE +PRG + + L+L L +
Sbjct: 218 FGVDMECGGGGGSVNSTEEESSSSGGSIPRGRV-SMVGAGSLLQLRLVSSDDESLVAMEA 276
Query: 1015 XXXXQ---FAKKGKSSLSLNFN 1071
F KKGK SLS + +
Sbjct: 277 ASLEDHHFFTKKGKPSLSFDLD 298
Database: BlastDB/NCBI/blast/db/2003_02_27_02_00_4/nr
Posted date: Feb 27, 2003 4:02 PM
Number of letters in database: 431,508,457
Number of sequences in database: 1,347,713
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 431,508,457
effective HSP length: 124
effective length of database: 264,392,045
effective search space used: 61867738530
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)