BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE845346.x
(101 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52416 lti30 protein [imported] - Arabidopsis thaliana... 77 9e-14
pir||S52654 cold acclimation protein lti30 - Arabidopsis th... 77 9e-14
gb|AAN60327.1| unknown [Arabidopsis thaliana] 77 9e-14
ref|NP_190666.1| dehydrin Xero2; protein id: At3g50970.1, s... 77 9e-14
pir||KNMUHY dehydrin-like protein - Arabidopsis thaliana|gi... 42 0.003
>pir||T52416 lti30 protein [imported] - Arabidopsis thaliana
(fragment)|gi|509260|emb|CAA54704.1| lti30 [Arabidopsis
thaliana]
Length = 187
Score = 76.6 bits (187), Expect = 9e-14
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY
Sbjct: 54 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 86
Score = 69.3 bits (168), Expect = 2e-11
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKK +TEKVME+LPGHHGSHQTGTNT Y
Sbjct: 92 GGVHHEKKSVTEKVMEKLPGHHGSHQTGTNTAY 124
Score = 57.0 bits (136), Expect = 8e-08
Identities = 21/31 (67%), Positives = 28/31 (89%)
Frame = +2
Query: 8 VHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
VHHEKKG+ EK+ ++LPGHHG+H+TGT T+Y
Sbjct: 131 VHHEKKGIAEKIKDELPGHHGTHKTGTTTSY 161
Score = 37.0 bits (84), Expect = 0.083
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 23 KGMTEKVMEQLPGHHGSHQTG 85
+G+TEK+ME+LPGHHG TG
Sbjct: 7 QGITEKIMEKLPGHHGPTNTG 27
Score = 31.2 bits (69), Expect = 4.6
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHE K +K+ E+LPG H
Sbjct: 165 GVVHHENKSTMDKIKEKLPGGH 186
>pir||S52654 cold acclimation protein lti30 - Arabidopsis thaliana (fragment)
Length = 187
Score = 76.6 bits (187), Expect = 9e-14
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY
Sbjct: 54 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 86
Score = 69.3 bits (168), Expect = 2e-11
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKK +TEKVME+LPGHHGSHQTGTNT Y
Sbjct: 92 GGVHHEKKSVTEKVMEKLPGHHGSHQTGTNTAY 124
Score = 59.3 bits (142), Expect = 2e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +2
Query: 8 VHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
VHHEKKG+ EK+ EQLPGHHG+H+TGT T+Y
Sbjct: 131 VHHEKKGIAEKIKEQLPGHHGTHKTGTTTSY 161
Score = 37.0 bits (84), Expect = 0.083
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 23 KGMTEKVMEQLPGHHGSHQTG 85
+G+TEK+ME+LPGHHG TG
Sbjct: 7 QGITEKIMEKLPGHHGPTNTG 27
Score = 31.2 bits (69), Expect = 4.6
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHE K +K+ E+LPG H
Sbjct: 165 GVVHHENKSTMDKIKEKLPGGH 186
>gb|AAN60327.1| unknown [Arabidopsis thaliana]
Length = 159
Score = 76.6 bits (187), Expect = 9e-14
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY
Sbjct: 60 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 92
Score = 69.3 bits (168), Expect = 2e-11
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKK +TEKVME+LPGHHGSHQTGTNT Y
Sbjct: 98 GGVHHEKKSVTEKVMEKLPGHHGSHQTGTNTAY 130
Score = 47.8 bits (112), Expect = 5e-05
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2
Query: 8 VHHEKKGMTEKVMEQLPGHHGSH 76
VHHEKKG+ EK+ EQLPGHHG+H
Sbjct: 137 VHHEKKGIAEKIKEQLPGHHGTH 159
Score = 41.2 bits (95), Expect = 0.004
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 17 EKKGMTEKVMEQLPGHHGSHQTG 85
+KKG+TEK+ME+LPGHHG TG
Sbjct: 11 QKKGITEKIMEKLPGHHGPTNTG 33
>ref|NP_190666.1| dehydrin Xero2; protein id: At3g50970.1, supported by cDNA:
gi_15809983 [Arabidopsis
thaliana]|gi|1169341|sp|P42758|DHX2_ARATH Dehydrin Xero
2 (Low-temperature-induced protein
LTI30)|gi|2129571|pir||S63689 dehydrin-like protein
Xero2/lti30 - Arabidopsis
thaliana|gi|633763|gb|AAB00374.1|
dehydrin|gi|6562249|emb|CAB62619.1| dehydrin Xero2
[Arabidopsis thaliana]|gi|15809984|gb|AAL06919.1|
AT3g50970/F24M12_10 [Arabidopsis
thaliana]|gi|22135759|gb|AAM91036.1| AT3g50970/F24M12_10
[Arabidopsis thaliana]
Length = 193
Score = 76.6 bits (187), Expect = 9e-14
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY
Sbjct: 60 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 92
Score = 69.3 bits (168), Expect = 2e-11
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKK +TEKVME+LPGHHGSHQTGTNT Y
Sbjct: 98 GGVHHEKKSVTEKVMEKLPGHHGSHQTGTNTAY 130
Score = 59.3 bits (142), Expect = 2e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +2
Query: 8 VHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
VHHEKKG+ EK+ EQLPGHHG+H+TGT T+Y
Sbjct: 137 VHHEKKGIAEKIKEQLPGHHGTHKTGTTTSY 167
Score = 41.2 bits (95), Expect = 0.004
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 17 EKKGMTEKVMEQLPGHHGSHQTG 85
+KKG+TEK+ME+LPGHHG TG
Sbjct: 11 QKKGITEKIMEKLPGHHGPTNTG 33
Score = 31.2 bits (69), Expect = 4.6
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHE K +K+ E+LPG H
Sbjct: 171 GVVHHENKSTMDKIKEKLPGGH 192
>pir||KNMUHY dehydrin-like protein - Arabidopsis
thaliana|gi|17684|emb|CAA45524.1| dehydrin [Arabidopsis
thaliana]
Length = 127
Score = 41.6 bits (96), Expect = 0.003
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQT---GTNTT 97
GG +KKG+TEK+ E+LPGHH S++T G+ TT
Sbjct: 66 GGRRRKKKGITEKIKEKLPGHHDSNKTSSLGSTTT 100
Score = 39.3 bits (90), Expect = 0.017
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHEKKGM EK+ E+LPG H
Sbjct: 105 GTVHHEKKGMMEKIKEKLPGGH 126
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.313 0.127 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 9
effective length of database: 417,137,127
effective search space used: 10011291048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)