BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV518094.r
         (137 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_172750.1|  putative calcium-binding protein, calretic...    96   1e-19
sp|P09672|G3PA_SINAL  Glyceraldehyde 3-phosphate dehydrogena...    96   1e-19
emb|CAC80393.1|  glyceraldehyde-3-phosphate dehydrogenase [S...    96   2e-19
pir||B24430  glyceraldehyde-3-phosphate dehydrogenase (NADP)...    96   2e-19
sp|P09044|G3PB_TOBAC  Glyceraldehyde 3-phosphate dehydrogena...    96   2e-19

>ref|NP_172750.1| putative calcium-binding protein, calreticulin; protein id:
           At1g12900.1 [Arabidopsis
           thaliana]|gi|25284345|pir||F86262 F13K23.15 protein -
           Arabidopsis
           thaliana|gi|8698736|gb|AAF78494.1|AC012187_14 Strong
           similarity to GAPDH subunit A from Pisum sativum
           gb|X15190 and contains a GAPDH PF|00044 domain.  ESTs
           gb|T42920, gb|T43410, gb|T46101, gb|T04006, gb|T20630,
           gb|Z34677, gb|T46805, gb|N37754, gb|N37754, gb|Z26072,
           gb|H37169, gb|H76419, gb|T20834, gb|T21557, gb|AA713258,
           gb|T04005, gb|AI099909, gb|Z34793 come from this gene.
           [Arabidopsis thaliana]
          Length = 399

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 44/45 (97%), Positives = 44/45 (97%)
 Frame = -2

Query: 136 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYGNEWGY 2
           VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWY NEWGY
Sbjct: 339 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGY 383



>sp|P09672|G3PA_SINAL Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit A)|gi|81721|pir||B24796
           glyceraldehyde-3-phosphate dehydrogenase (NADP)
           (phosphorylating) (EC 1.2.1.13), chloroplast - white
           mustard (fragment)|gi|829288|emb|CAA27845.1| chloroplast
           GAPDH (233aa) [Sinapis alba]
          Length = 233

 Score = 95.9 bits (237), Expect = 1e-19
 Identities = 44/45 (97%), Positives = 44/45 (97%)
 Frame = -2

Query: 136 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYGNEWGY 2
           VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWY NEWGY
Sbjct: 173 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGY 217



>emb|CAC80393.1| glyceraldehyde-3-phosphate dehydrogenase [Sphagnum cuspidatum]
          Length = 318

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 43/45 (95%), Positives = 44/45 (97%)
 Frame = -2

Query: 136 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYGNEWGY 2
           VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKV+AWY NEWGY
Sbjct: 274 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYXNEWGY 318



>pir||B24430 glyceraldehyde-3-phosphate dehydrogenase (NADP)  (phosphorylating)
           (EC 1.2.1.13) B, chloroplast - common tobacco (fragment)
          Length = 385

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 43/45 (95%), Positives = 44/45 (97%)
 Frame = -2

Query: 136 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYGNEWGY 2
           VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKV+AWY NEWGY
Sbjct: 279 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGY 323



>sp|P09044|G3PB_TOBAC Glyceraldehyde 3-phosphate dehydrogenase B, chloroplast precursor
           (NADP-dependent glyceraldehydephosphate dehydrogenase
           subunit B)|gi|170239|gb|AAA34076.1|
           glyceraldehyde-3-phosphate dehydrogenase B-subunit
           precursor
          Length = 438

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 43/45 (95%), Positives = 44/45 (97%)
 Frame = -2

Query: 136 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYGNEWGY 2
           VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKV+AWY NEWGY
Sbjct: 332 VCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGY 376



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 21
effective length of database: 401,068,575
effective search space used: 9625645800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)