BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.7402.C1
(1881 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186896.1| S-adenosylmethionine decarboxylase; protei... 670 0.0
gb|AAL06846.1| AT3g02470/F16B3_10 [Arabidopsis thaliana] 668 0.0
emb|CAA69073.1| S-adenosylmethionine decarboxylase [Arabido... 666 0.0
gb|AAB17665.1| S-adenosylmethionine decarboxylase [Arabidop... 661 0.0
sp|Q9SDM8|DCA3_BRAJU S-adenosylmethionine decarboxylase pro... 631 e-179
>ref|NP_186896.1| S-adenosylmethionine decarboxylase; protein id: At3g02470.1,
supported by cDNA: gi_14596072, supported by cDNA:
gi_15809835, supported by cDNA: gi_16226704 [Arabidopsis
thaliana]|gi|19864681|sp|Q96286|DCA1_ARATH
S-adenosylmethionine decarboxylase proenzyme 1 (AdoMetDC
1) (SamDC 1) [Contains: S-adenosylmethionine
decarboxylase 1 alpha chain; S-adenosylmethionine
decarboxylase 1 beta chain]|gi|6957710|gb|AAF32454.1|
S-adenosylmethionine decarboxylase [Arabidopsis
thaliana]|gi|14596073|gb|AAK68764.1| S-adenosylmethionine
decarboxylase [Arabidopsis
thaliana]|gi|16226705|gb|AAL16237.1|AF428468_1
AT3g02470/F16B3_10 [Arabidopsis
thaliana]|gi|20148235|gb|AAM10008.1| S-adenosylmethionine
decarboxylase [Arabidopsis thaliana]
Length = 366
Score = 670 bits (1728), Expect = 0.0
Identities = 334/346 (96%), Positives = 334/346 (96%)
Frame = +3
Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 722
MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ
Sbjct: 1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 60
Query: 723 LDSYVLSESSFFVYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSVKSVKYTRGSFLCPG 902
LDSYVLSESSFFVYPYKVIIKTCGTT AGELSLSVKSVKYTRGSFLCPG
Sbjct: 61 LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPG 120
Query: 903 GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT 1082
GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT
Sbjct: 121 GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT 180
Query: 1083 LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD 1262
LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD
Sbjct: 181 LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD 240
Query: 1263 AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 1442
AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK
Sbjct: 241 AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 300
Query: 1443 PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL 1580
PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL
Sbjct: 301 PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL 346
>gb|AAL06846.1| AT3g02470/F16B3_10 [Arabidopsis thaliana]
Length = 366
Score = 668 bits (1723), Expect = 0.0
Identities = 333/346 (96%), Positives = 333/346 (96%)
Frame = +3
Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 722
MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ
Sbjct: 1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 60
Query: 723 LDSYVLSESSFFVYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSVKSVKYTRGSFLCPG 902
LDSYVLSESSFFVYPYKVIIKTCGTT AGELSLSVKSVKYTRGSFLCPG
Sbjct: 61 LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPG 120
Query: 903 GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT 1082
GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT
Sbjct: 121 GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT 180
Query: 1083 LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD 1262
LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD
Sbjct: 181 LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD 240
Query: 1263 AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 1442
AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK
Sbjct: 241 AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 300
Query: 1443 PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL 1580
PEITVDLEDYGCRERTFESLGEESGTVMY TFEKLGKYCGSPRSTL
Sbjct: 301 PEITVDLEDYGCRERTFESLGEESGTVMYHTFEKLGKYCGSPRSTL 346
>emb|CAA69073.1| S-adenosylmethionine decarboxylase [Arabidopsis thaliana]
Length = 366
Score = 666 bits (1718), Expect = 0.0
Identities = 333/346 (96%), Positives = 333/346 (96%)
Frame = +3
Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 722
MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ
Sbjct: 1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 60
Query: 723 LDSYVLSESSFFVYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSVKSVKYTRGSFLCPG 902
LDSYVLSESSFFVYPYKVIIKTCGTT AGELSLSVKSVKYTRGSFLCPG
Sbjct: 61 LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPG 120
Query: 903 GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT 1082
GQ FPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT
Sbjct: 121 GQLFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT 180
Query: 1083 LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD 1262
LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD
Sbjct: 181 LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD 240
Query: 1263 AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 1442
AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK
Sbjct: 241 AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 300
Query: 1443 PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL 1580
PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL
Sbjct: 301 PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL 346
>gb|AAB17665.1| S-adenosylmethionine decarboxylase [Arabidopsis thaliana]
Length = 366
Score = 661 bits (1705), Expect = 0.0
Identities = 331/346 (95%), Positives = 331/346 (95%)
Frame = +3
Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 722
MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ
Sbjct: 1 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 60
Query: 723 LDSYVLSESSFFVYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSVKSVKYTRGSFLCPG 902
LDSYVLSESSFFVYPYKVIIKTCGTT AGELSLSVKSVKYTRGSFLCPG
Sbjct: 61 LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPG 120
Query: 903 GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT 1082
GQPFPHRSFSEEVSVLDGHFTQLGLNSVA LMGNDDETKKWHVYAASAQDSSNCNNNVYT
Sbjct: 121 GQPFPHRSFSEEVSVLDGHFTQLGLNSVATLMGNDDETKKWHVYAASAQDSSNCNNNVYT 180
Query: 1083 LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEGD 1262
LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRK LPKSEICDFEFEPCGYSMNSIEGD
Sbjct: 181 LEMCMTGLDREKAAVFYKDEADKTGSMTDNSGIRKNLPKSEICDFEFEPCGYSMNSIEGD 240
Query: 1263 AISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 1442
AIST HVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK
Sbjct: 241 AISTNHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSYK 300
Query: 1443 PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL 1580
PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL
Sbjct: 301 PEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL 346
>sp|Q9SDM8|DCA3_BRAJU S-adenosylmethionine decarboxylase proenzyme 3 (AdoMetDC 3) (SamDC 3)
[Contains: S-adenosylmethionine decarboxylase 3 alpha
chain; S-adenosylmethionine decarboxylase 3 beta
chain]|gi|6636362|gb|AAF20160.1|AF215665_1
S-adenosyl-L-methionine decarboxylase [Brassica juncea]
Length = 367
Score = 631 bits (1628), Expect = e-179
Identities = 313/347 (90%), Positives = 326/347 (93%), Gaps = 1/347 (0%)
Frame = +3
Query: 543 MALSAIGFEGYEKRLEVTFFEPSIFQDSKGLGLRALTKSQLDEILTPAACTIVSSLSNDQ 722
MALSAIGFEGYEKRLEV+FFEPS FQDSKGLGLRALT+SQLDEILTPAAC IVSSLSND
Sbjct: 1 MALSAIGFEGYEKRLEVSFFEPSFFQDSKGLGLRALTRSQLDEILTPAACEIVSSLSNDH 60
Query: 723 LDSYVLSESSFFVYPYKVIIKTCGTTXXXXXXXXXXXXAGELSLSVKSVKYTRGSFLCPG 902
LDSYVLSESSFFVYPYKVIIKTCGTT AGELSLSVKSVKYTRGSFLCPG
Sbjct: 61 LDSYVLSESSFFVYPYKVIIKTCGTTKLLLSIPPLLKLAGELSLSVKSVKYTRGSFLCPG 120
Query: 903 GQPFPHRSFSEEVSVLDGHFTQLGLNSVAYLMGNDDETKKWHVYAASAQDSSNCNNNVYT 1082
GQPFPHRSFSEEVSVLDGHFT+LGLNSVAYLMGNDDE KKWHVYAASAQ SS+CNNNVYT
Sbjct: 121 GQPFPHRSFSEEVSVLDGHFTKLGLNSVAYLMGNDDENKKWHVYAASAQTSSDCNNNVYT 180
Query: 1083 LEMCMTGLDREKAAVFYKDE-ADKTGSMTDNSGIRKILPKSEICDFEFEPCGYSMNSIEG 1259
LEMCMTGLD+EKA+VFYK+E + GSMTDNSGIRKILPKS+ICDFEFEPCGYSMNS+EG
Sbjct: 181 LEMCMTGLDKEKASVFYKNETGGENGSMTDNSGIRKILPKSQICDFEFEPCGYSMNSVEG 240
Query: 1260 DAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGANSY 1439
DAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVG+N+Y
Sbjct: 241 DAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVTRVLSCFEPKQFSVAVHSSVGSNAY 300
Query: 1440 KPEITVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL 1580
KPEI+VDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL
Sbjct: 301 KPEISVDLEDYGCRERTFESLGEESGTVMYQTFEKLGKYCGSPRSTL 347
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 129
effective length of database: 256,451,607
effective search space used: 127456448679
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)