BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.6623.C1
(1809 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565913.1| auxin-regulated protein; protein id: At2g3... 931 0.0
gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana] 928 0.0
gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana] 926 0.0
pir||S04048 ribulose-bisphosphate carboxylase activase (EC ... 890 0.0
ref|NP_671941.1| auxin-regulated protein; protein id: At2g3... 853 0.0
>ref|NP_565913.1| auxin-regulated protein; protein id: At2g39730.1, supported by cDNA:
7114., supported by cDNA: gi_13358237, supported by cDNA:
gi_15450378, supported by cDNA: gi_15810187 [Arabidopsis
thaliana]|gi|12643259|sp|P10896|RCA_ARATH Ribulose
bisphosphate carboxylase/oxygenase activase, chloroplast
precursor (RuBisCO activase) (RA)|gi|7438143|pir||T01002
ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
At2g39730, splice form 1 - Arabidopsis
thaliana|gi|166834|gb|AAA20202.1| ribulose bisphosphate
carboxylase/oxygenase activase|gi|2642155|gb|AAB87122.1|
expressed protein [Arabidopsis
thaliana]|gi|11762250|gb|AAG40401.1|AF325049_1 At2g39730
[Arabidopsis thaliana]|gi|15810188|gb|AAL06995.1|
At2g39730/T5I7.3_ [Arabidopsis
thaliana]|gi|21594581|gb|AAM66023.1| unknown [Arabidopsis
thaliana]
Length = 474
Score = 931 bits (2405), Expect = 0.0
Identities = 462/474 (97%), Positives = 462/474 (97%)
Frame = +3
Query: 204 MAAAVSTVGAINRAPLSLNXXXXXXXXXXXXTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 383
MAAAVSTVGAINRAPLSLN TFLGKKVVTVSRFAQSNKKSNGSFKVLAV
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 60
Query: 384 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 563
KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR
Sbjct: 61 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 120
Query: 564 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA 743
QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA
Sbjct: 121 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA 180
Query: 744 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 923
KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 240
Query: 924 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 1103
TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 300
Query: 1104 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF 1283
EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF
Sbjct: 301 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF 360
Query: 1284 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 1463
VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA
Sbjct: 361 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 420
Query: 1464 ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 1625
ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF
Sbjct: 421 ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 928 bits (2398), Expect = 0.0
Identities = 461/474 (97%), Positives = 461/474 (97%)
Frame = +3
Query: 204 MAAAVSTVGAINRAPLSLNXXXXXXXXXXXXTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 383
MAAAVSTVGAINRAPLSLN TFLGKKVVTVSRFAQSNKKSNGSFKVLAV
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 60
Query: 384 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 563
KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR
Sbjct: 61 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 120
Query: 564 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA 743
QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA
Sbjct: 121 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA 180
Query: 744 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 923
KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 240
Query: 924 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 1103
TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 300
Query: 1104 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF 1283
EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFP QSIDFFGALRARVYDDEVRKF
Sbjct: 301 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVRKF 360
Query: 1284 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 1463
VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA
Sbjct: 361 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 420
Query: 1464 ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 1625
ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF
Sbjct: 421 ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 926 bits (2392), Expect = 0.0
Identities = 460/474 (97%), Positives = 460/474 (97%)
Frame = +3
Query: 204 MAAAVSTVGAINRAPLSLNXXXXXXXXXXXXTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 383
MAAAVSTVGAINRAPLSLN TFLGKKVVTVSRFAQSNKKSNGSFKVLAV
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 60
Query: 384 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 563
KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR
Sbjct: 61 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 120
Query: 564 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA 743
QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA
Sbjct: 121 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA 180
Query: 744 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 923
KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCL INDLDAGAGRMGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRMGGT 240
Query: 924 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 1103
TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 300
Query: 1104 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF 1283
EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFP QSIDFFGALRARVYDDEVRKF
Sbjct: 301 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVRKF 360
Query: 1284 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 1463
VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA
Sbjct: 361 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 420
Query: 1464 ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 1625
ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF
Sbjct: 421 ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474
>pir||S04048 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) precursor -
Arabidopsis thaliana|gi|16471|emb|CAA32429.1| rubisco
activase (AA 1 - 473) [Arabidopsis thaliana]
Length = 473
Score = 890 bits (2299), Expect = 0.0
Identities = 449/474 (94%), Positives = 450/474 (94%)
Frame = +3
Query: 204 MAAAVSTVGAINRAPLSLNXXXXXXXXXXXXTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 383
MAAAVSTVGAINRAPLSLN TFLGKKVVTVSRFAQSNKKSNGSFKVLAV
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 60
Query: 384 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 563
KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR
Sbjct: 61 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 120
Query: 564 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA 743
QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILG GGKGQGKSFQCELVMA
Sbjct: 121 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGSRGGKGQGKSFQCELVMA 180
Query: 744 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 923
KMGINPIMMSAGELESGNAGE KLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEVRKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 240
Query: 924 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 1103
TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLY PLI DGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYGPLILDGRM 300
Query: 1104 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF 1283
EKF PTREDRIGV GIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF
Sbjct: 301 EKFLTGPTREDRIGVW-GIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF 359
Query: 1284 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 1463
VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA
Sbjct: 360 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 419
Query: 1464 ALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 1625
ALGDANADAIGRGTFYGKGA +VNLPVPEGCTDPVAENFDPTARSDDGTCVYNF
Sbjct: 420 ALGDANADAIGRGTFYGKGAHEVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 473
>ref|NP_671941.1| auxin-regulated protein; protein id: At2g39730.2, supported by cDNA:
gi_15450670 [Arabidopsis thaliana]|gi|7438144|pir||T01003
ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
T5I7.3, splice form 2 - Arabidopsis
thaliana|gi|166835|gb|AAA20203.1| ribulose bisphosphate
carboxylase/oxygenase activase|gi|15450671|gb|AAK96607.1|
At2g39730/T5I7.3 [Arabidopsis
thaliana]|gi|23397139|gb|AAN31853.1| unknown protein
[Arabidopsis thaliana]
Length = 446
Score = 853 bits (2204), Expect = 0.0
Identities = 426/438 (97%), Positives = 426/438 (97%)
Frame = +3
Query: 204 MAAAVSTVGAINRAPLSLNXXXXXXXXXXXXTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 383
MAAAVSTVGAINRAPLSLN TFLGKKVVTVSRFAQSNKKSNGSFKVLAV
Sbjct: 1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLAV 60
Query: 384 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 563
KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR
Sbjct: 61 KEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLR 120
Query: 564 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA 743
QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA
Sbjct: 121 QYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMA 180
Query: 744 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 923
KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGT 240
Query: 924 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 1103
TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRM 300
Query: 1104 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF 1283
EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF
Sbjct: 301 EKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKF 360
Query: 1284 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 1463
VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA
Sbjct: 361 VESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQA 420
Query: 1464 ALGDANADAIGRGTFYGK 1517
ALGDANADAIGRGTFYGK
Sbjct: 421 ALGDANADAIGRGTFYGK 438
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 129
effective length of database: 256,451,607
effective search space used: 121301610111
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)