BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU235568.f
         (128 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178982.1|  unknown protein; protein id: At2g13580.1 [...    57   8e-08
ref|NP_178140.1|  cytochrome c oxidase subunit, putative; pr...    37   0.081
gb|AAM64516.1|  cytochrome c oxidase subunit, putative [Arab...    37   0.081

>ref|NP_178982.1| unknown protein; protein id: At2g13580.1 [Arabidopsis
           thaliana]|gi|25411500|pir||G84508 hypothetical protein
           At2g13580 [imported] - Arabidopsis
           thaliana|gi|4558663|gb|AAD22681.1| unknown protein
           [Arabidopsis thaliana]
          Length = 165

 Score = 57.0 bits (136), Expect = 8e-08
 Identities = 24/26 (92%), Positives = 24/26 (92%)
 Frame = +2

Query: 47  FPEESRPLCGGEXFHRILNPSPPSGP 124
           FPEESRPLCG E FHRILNPSPPSGP
Sbjct: 134 FPEESRPLCGEESFHRILNPSPPSGP 159



>ref|NP_178140.1| cytochrome c oxidase subunit, putative; protein id: At1g80230.1,
           supported by cDNA: 29901. [Arabidopsis
           thaliana]|gi|25406645|pir||H96833 hypothetical protein
           F18B13.29 [imported] - Arabidopsis
           thaliana|gi|5902388|gb|AAD55490.1|AC009322_30 Unknown
           protein [Arabidopsis thaliana]
          Length = 171

 Score = 37.0 bits (84), Expect = 0.081
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 70  MWRRXVSSHLKSISAVGS 123
           MWRR VSSHLKSISAVGS
Sbjct: 1   MWRRIVSSHLKSISAVGS 18



>gb|AAM64516.1| cytochrome c oxidase subunit, putative [Arabidopsis thaliana]
          Length = 171

 Score = 37.0 bits (84), Expect = 0.081
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 70  MWRRXVSSHLKSISAVGS 123
           MWRR VSSHLKSISAVGS
Sbjct: 1   MWRRIVSSHLKSISAVGS 18



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 18
effective length of database: 405,085,713
effective search space used: 9722057112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)