BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.4915.C1
(1494 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178969.1| alanine-glyoxylate aminotransferase; prote... 777 0.0
gb|AAL47679.1| aminotransferase 1 [Cucumis melo] 708 0.0
gb|AAB95218.1| putative serine-glyoxylate aminotransferase ... 693 0.0
gb|AAL62332.1|AF461048_1 aminotransferase 2 [Cucumis melo] 692 0.0
ref|NP_102937.1| probable serine-glyoxylate aminotransferas... 390 e-107
>ref|NP_178969.1| alanine-glyoxylate aminotransferase; protein id: At2g13360.1,
supported by cDNA: 8306., supported by cDNA: gi_12082306,
supported by cDNA: gi_20465424, supported by cDNA:
gi_21281088, supported by cDNA: gi_3288820 [Arabidopsis
thaliana]|gi|25287370|pir||T52250 probable
alanine-glyoxylate transaminase (EC 2.6.1.44) [imported]
- Arabidopsis thaliana|gi|3288821|gb|AAC26854.1|
alanine:glyoxylate aminotransferase; transaminase
[Arabidopsis thaliana]|gi|4733989|gb|AAD28669.1|
alanine-glyoxylate aminotransferase [Arabidopsis
thaliana]|gi|12082307|dbj|BAB20811.1| serine glyoxylate
aminotransferase [Arabidopsis
thaliana]|gi|20465425|gb|AAM20136.1| putative
alanine-glyoxylate aminotransferase [Arabidopsis
thaliana]|gi|21281089|gb|AAM45058.1| putative
alanine-glyoxylate aminotransferase [Arabidopsis
thaliana]
Length = 401
Score = 777 bits (2007), Expect = 0.0
Identities = 386/401 (96%), Positives = 386/401 (96%)
Frame = +2
Query: 116 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKXXXX 295
MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFK
Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 296 XXXXXXXXXXXAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 475
AWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 476 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 655
ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI
Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180
Query: 656 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 835
CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 240
Query: 836 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 1015
YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300
Query: 1016 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 1195
EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL
Sbjct: 301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 360
Query: 1196 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 1318
GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
>gb|AAL47679.1| aminotransferase 1 [Cucumis melo]
Length = 401
Score = 708 bits (1828), Expect = 0.0
Identities = 345/401 (86%), Positives = 370/401 (92%)
Frame = +2
Query: 116 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKXXXX 295
MDY+Y PG++HLFVPGPVNIPEPV+RAMNRNNEDYRSPA+PALTKTLLEDVKKIFK
Sbjct: 1 MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKSTTG 60
Query: 296 XXXXXXXXXXXAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 475
AWESALTNTLSPGDRIVSFLIGQFSLLWIDQQ+RLNFNVDVVESDWGQG
Sbjct: 61 TTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQG 120
Query: 476 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 655
ANL VL SKL+ D HTIKAICIVHNETATGVTND+S VR LLD YKHPALLLVDGVSSI
Sbjct: 121 ANLDVLESKLATDGGHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSI 180
Query: 656 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 835
CALDFRMDEWGVDVALTGSQKALSLPTGLGI+CASPKALEA+KTSKS+KVFFDW DYLKF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIICASPKALEASKTSKSVKVFFDWKDYLKF 240
Query: 836 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 1015
Y LGTYWPYTPSIQLLYGLRAALDL+FEEGL+N+IARH+RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQK 300
Query: 1016 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 1195
EEW S+TVTAV+VP +ID +EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLGN+NELQLL
Sbjct: 301 EEWFSDTVTAVLVPSYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360
Query: 1196 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 1318
GCLAGVEM+LKDVGYPV +GSGVAAAS YLQ++IPLIPSRI
Sbjct: 361 GCLAGVEMVLKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI 401
>gb|AAB95218.1| putative serine-glyoxylate aminotransferase [Fritillaria agrestis]
Length = 401
Score = 693 bits (1788), Expect = 0.0
Identities = 332/401 (82%), Positives = 368/401 (90%)
Frame = +2
Query: 116 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKXXXX 295
MDY+YGPGR+HLFVPGPVNIPEPVIRAMNRNNEDYR+PAIPALTKTLLEDVKK+FK
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEPVIRAMNRNNEDYRAPAIPALTKTLLEDVKKLFKTTTG 60
Query: 296 XXXXXXXXXXXAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 475
AWESALTNTLSPGD IVSFLIGQFSLLWIDQQ+RL F VDV+ES+WGQG
Sbjct: 61 TPFIIPTTGTGAWESALTNTLSPGDTIVSFLIGQFSLLWIDQQQRLKFKVDVIESEWGQG 120
Query: 476 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 655
ANL LASKL+ D HTIKA+CIVHNETATGVTN+++AVR LLD Y HPALLLVDGVSSI
Sbjct: 121 ANLDELASKLAADRTHTIKAVCIVHNETATGVTNNLAAVRKLLDDYNHPALLLVDGVSSI 180
Query: 656 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 835
CALDFRMDEWG+DVALTGSQKALS+PTG+G +CASPKALEA+KT++S +VFFDWNDYLKF
Sbjct: 181 CALDFRMDEWGIDVALTGSQKALSMPTGMGFICASPKALEASKTAQSARVFFDWNDYLKF 240
Query: 836 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 1015
YK+GTYWPYTPSIQ+LYGLRAALDLIFEEGL+N+IARH+RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YKIGTYWPYTPSIQMLYGLRAALDLIFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQK 300
Query: 1016 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 1195
EEW S+TVTAV+VPP+ID SEIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLGN+NELQLL
Sbjct: 301 EEWHSDTVTAVVVPPYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360
Query: 1196 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 1318
GCL+GVEM+LKDVGYPV +GSGVAAA+TYLQ+ P+IPSRI
Sbjct: 361 GCLSGVEMVLKDVGYPVKLGSGVAAAATYLQNSTPMIPSRI 401
>gb|AAL62332.1|AF461048_1 aminotransferase 2 [Cucumis melo]
Length = 401
Score = 692 bits (1785), Expect = 0.0
Identities = 334/401 (83%), Positives = 368/401 (91%)
Frame = +2
Query: 116 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKXXXX 295
MDY+YGPGR+HLFVPGPVNIPE V+RAMNRNNEDYRSPA+PALTKTLLEDVKKIFK
Sbjct: 1 MDYVYGPGRNHLFVPGPVNIPEQVLRAMNRNNEDYRSPAVPALTKTLLEDVKKIFKTTSG 60
Query: 296 XXXXXXXXXXXAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 475
AWESALTNTLSPGDRIVSFLIGQFSLLWIDQQ+RLNF VDV+ES+WG+G
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFKVDVIESEWGEG 120
Query: 476 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 655
A L VLA+KL+ D +HTIKA+CIVHNETATGVTND+S VR +L Y+HPAL LVDGVSSI
Sbjct: 121 AKLDVLAAKLAADTDHTIKAVCIVHNETATGVTNDLSLVRRILHEYRHPALFLVDGVSSI 180
Query: 656 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 835
CALDFRMD+WGVDVALTGSQKALSLPTG+GIVCASP+ALEA+KT+KSL+VFFDW DYLKF
Sbjct: 181 CALDFRMDDWGVDVALTGSQKALSLPTGIGIVCASPRALEASKTAKSLRVFFDWKDYLKF 240
Query: 836 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 1015
Y LGTYWPYTPSIQLLYGLR ALDL+FEEGLEN+IARH RLG+ATRLAVEAWGLKNCTQK
Sbjct: 241 YNLGTYWPYTPSIQLLYGLRPALDLVFEEGLENVIARHKRLGQATRLAVEAWGLKNCTQK 300
Query: 1016 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 1195
EEW S+TVTAV+VPP+ID +EIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLGN+NELQLL
Sbjct: 301 EEWHSDTVTAVVVPPYIDSAEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360
Query: 1196 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 1318
GCLAGVEMILKDVGYPV +GSGVAAAS+YLQ++IPLIPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVKLGSGVAAASSYLQNNIPLIPSRI 401
>ref|NP_102937.1| probable serine-glyoxylate aminotransferase [Mesorhizobium
loti]|gi|14022113|dbj|BAB48723.1| probable
serine-glyoxylate aminotransferase [Mesorhizobium loti]
Length = 396
Score = 390 bits (1003), Expect = e-107
Identities = 199/385 (51%), Positives = 257/385 (66%)
Frame = +2
Query: 137 GRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKXXXXXXXXXXX 316
G HLF+PGP NIPE V +AMN ED R+ + P LT L ED+K++FK
Sbjct: 3 GFTHLFIPGPTNIPEQVRQAMNLPMEDMRAASFPDLTLPLFEDIKRVFKNETGRVFIYPS 62
Query: 317 XXXXAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQGANLQVLA 496
AWE+A+TN LSPGDR++ GQFS LW+D +RL VDV++ +WG G L++ A
Sbjct: 63 SGTGAWEAAMTNVLSPGDRVLMSRFGQFSHLWVDMAERLGLEVDVIDCEWGTGVPLELYA 122
Query: 497 SKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSICALDFRM 676
+L D+ H IKA+ NETATGVT+D++ R LD HPALL VDGVSSI ++DFR
Sbjct: 123 ERLKADKEHRIKAVFCTQNETATGVTSDVAGCRAALDDANHPALLFVDGVSSIGSIDFRQ 182
Query: 677 DEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKFYKLGTYW 856
+EWGVD A++GSQK LP GLG + S KAL A++T+ + FF + D ++ G Y+
Sbjct: 183 EEWGVDCAVSGSQKGFMLPAGLGFLSVSKKALVASRTATHRRCFFSFEDMIRANDAG-YF 241
Query: 857 PYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNT 1036
PYTP+ QLL GLRA+LDLI EEGL+NI ARH RL + R AV+AWGLK C + +W S+T
Sbjct: 242 PYTPATQLLRGLRASLDLIAEEGLDNIFARHHRLAEGVRKAVDAWGLKLCAKAPKWHSDT 301
Query: 1037 VTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVE 1216
V+A+ VP ID +IV+RA++ Y SLG GLNKV GKVFRIGHLG +NE+ +L L+ E
Sbjct: 302 VSAIQVPEGIDSGDIVKRAYRTYQTSLGGGLNKVMGKVFRIGHLGWLNEVMVLASLSAAE 361
Query: 1217 MILKDVGYPVVMGSGVAAASTYLQH 1291
M L D G + GSGV AA +QH
Sbjct: 362 MALLDCGVRLAPGSGVGAA---IQH 383
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 127
effective length of database: 259,129,699
effective search space used: 95877988630
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)