BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV525851.f
         (107 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178585.1|  light-harvesting chlorophyll a/b binding p...    82   2e-15
pir||T52323  chlorophyll a/b-binding protein Lhcb2 [imported...    82   2e-15
ref|NP_189406.1|  light harvesting chlorophyll A/B binding p...    82   2e-15
ref|NP_178582.1|  light-harvesting chlorophyll a/b binding p...    82   2e-15
pir||T52326  chlorophyll a/b-binding protein Lhcb2 [imported...    82   2e-15

>ref|NP_178585.1| light-harvesting chlorophyll a/b binding protein; protein id:
           At2g05100.1, supported by cDNA: gi_15450348, supported
           by cDNA: gi_15450493, supported by cDNA: gi_4741943,
           supported by cDNA: gi_4741947 [Arabidopsis
           thaliana]|gi|4874296|gb|AAD31358.1| putative chlorophyll
           a/b binding protein [Arabidopsis
           thaliana]|gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2
           [Arabidopsis thaliana]|gi|15450494|gb|AAK96540.1|
           At2g05100/F15L11.2 [Arabidopsis
           thaliana]|gi|25054901|gb|AAN71932.1| putative
           chlorophyll a/b binding protein [Arabidopsis thaliana]
          Length = 265

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +1

Query: 1   PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 105
           PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE
Sbjct: 55  PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 89



>pir||T52323 chlorophyll a/b-binding protein Lhcb2 [imported] - Arabidopsis
           thaliana|gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2
           protein [Arabidopsis thaliana]
          Length = 265

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +1

Query: 1   PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 105
           PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE
Sbjct: 55  PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 89



>ref|NP_189406.1| light harvesting chlorophyll A/B binding protein, putative; protein
           id: At3g27690.1, supported by cDNA: 7700., supported by
           cDNA: gi_13899124, supported by cDNA: gi_4741949
           [Arabidopsis thaliana]|gi|25299028|pir||T52322
           chlorophyll a/b-binding protein Lhcb2 [imported] -
           Arabidopsis thaliana|gi|4741950|gb|AAD28772.1|AF134125_1
           Lhcb2 protein [Arabidopsis
           thaliana]|gi|9294474|dbj|BAB02693.1| light harvesting
           chlorophyll a/b-binding protein [Arabidopsis
           thaliana]|gi|13899125|gb|AAK48984.1|AF370557_1 light
           harvesting chlorophyll a/b-binding protein [Arabidopsis
           thaliana]
          Length = 266

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +1

Query: 1   PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 105
           PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE
Sbjct: 56  PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 90



>ref|NP_178582.1| light-harvesting chlorophyll a/b binding protein; protein id:
           At2g05070.1, supported by cDNA: gi_15809900, supported
           by cDNA: gi_17064973, supported by cDNA: gi_17978862,
           supported by cDNA: gi_20260047, supported by cDNA:
           gi_4741945 [Arabidopsis
           thaliana]|gi|25299030|pir||T52324 probable chlorophyll
           a/b binding protein At2g05070 [imported] - Arabidopsis
           thaliana|gi|4585935|gb|AAD25595.1| putative chlorophyll
           a/b binding protein [Arabidopsis
           thaliana]|gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2
           protein [Arabidopsis
           thaliana]|gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20
           [Arabidopsis thaliana]|gi|17064974|gb|AAL32641.1|
           putative chlorophyll a/b binding protein [Arabidopsis
           thaliana]|gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20
           [Arabidopsis thaliana]|gi|20260048|gb|AAM13371.1|
           putative chlorophyll a/b binding protein [Arabidopsis
           thaliana]
          Length = 265

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +1

Query: 1   PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 105
           PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE
Sbjct: 55  PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 89



>pir||T52326 chlorophyll a/b-binding protein Lhcb2 [imported] - Arabidopsis
           thaliana|gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2
           protein [Arabidopsis thaliana]
          Length = 265

 Score = 82.0 bits (201), Expect = 2e-15
 Identities = 35/35 (100%), Positives = 35/35 (100%)
 Frame = +1

Query: 1   PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 105
           PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE
Sbjct: 55  PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPE 89



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.307    0.138    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 11
effective length of database: 414,459,035
effective search space used: 9947016840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)