BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV520784.r
(101 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177587.1| geranylgeranyl reductase; protein id: At1g... 65 3e-10
emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thali... 65 3e-10
gb|AAN31803.1| putative geranylgeranyl reductase [Arabidops... 65 3e-10
emb|CAA07683.1| geranylgeranyl reductase [Nicotiana tabacum] 60 9e-09
gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max] 58 5e-08
>ref|NP_177587.1| geranylgeranyl reductase; protein id: At1g74470.1, supported by
cDNA: gi_15292918, supported by cDNA: gi_15450454,
supported by cDNA: gi_16648980, supported by cDNA:
gi_18700166, supported by cDNA: gi_20259040, supported
by cDNA: gi_20857315 [Arabidopsis
thaliana]|gi|25326665|pir||F96773 geranylgeranyl
reductase, 47568-49165 [imported] - Arabidopsis
thaliana|gi|12324810|gb|AAG52372.1|AC011765_24
geranylgeranyl reductase; 47568-49165 [Arabidopsis
thaliana]|gi|15292919|gb|AAK92830.1| putative
geranylgeranyl reductase [Arabidopsis
thaliana]|gi|15450455|gb|AAK96521.1| At1g74470/F1M20_15
[Arabidopsis thaliana]|gi|16648981|gb|AAL24342.1|
geranylgeranyl reductase [Arabidopsis
thaliana]|gi|18700167|gb|AAL77695.1| At1g74470/F1M20_15
[Arabidopsis thaliana]|gi|20259041|gb|AAM14236.1|
putative geranylgeranyl reductase [Arabidopsis
thaliana]|gi|20857316|gb|AAM26711.1| At1g74470/F1M20_15
[Arabidopsis thaliana]|gi|23397186|gb|AAN31876.1|
putative geranylgeranyl reductase [Arabidopsis
thaliana]|gi|27311931|gb|AAO00931.1| geranylgeranyl
reductase [Arabidopsis thaliana]
Length = 467
Score = 65.1 bits (157), Expect = 3e-10
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV
Sbjct: 435 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467
>emb|CAA74372.1| geranylgeranyl reductase [Arabidopsis thaliana]
Length = 472
Score = 65.1 bits (157), Expect = 3e-10
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV
Sbjct: 440 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 472
>gb|AAN31803.1| putative geranylgeranyl reductase [Arabidopsis thaliana]
Length = 467
Score = 65.1 bits (157), Expect = 3e-10
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV
Sbjct: 435 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467
>emb|CAA07683.1| geranylgeranyl reductase [Nicotiana tabacum]
Length = 464
Score = 60.1 bits (144), Expect = 9e-09
Identities = 28/33 (84%), Positives = 33/33 (99%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PG+P+ED+KLAVNTIGSLVRANALRRE++KLSV
Sbjct: 432 PGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464
>gb|AAD28640.2| geranylgeranyl hydrogenase [Glycine max]
Length = 462
Score = 57.8 bits (138), Expect = 5e-08
Identities = 26/33 (78%), Positives = 32/33 (96%)
Frame = -1
Query: 101 PGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 3
PG+PLED+KLA+NTIGSLVRANA+RRE+ KL+V
Sbjct: 430 PGNPLEDLKLAINTIGSLVRANAIRREMNKLNV 462
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 9
effective length of database: 417,137,127
effective search space used: 10011291048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)