BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV525740.f
(119 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174286.1| light-harvesting chlorophyll a/b binding p... 55 4e-07
gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis... 53 1e-06
ref|NP_564339.1| photosystem II type I chlorophyll a /b bi... 53 1e-06
gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [B... 50 7e-06
sp|P13851|CB21_SINAL Chlorophyll A-B binding protein 1, chl... 50 7e-06
>ref|NP_174286.1| light-harvesting chlorophyll a/b binding protein; protein id:
At1g29930.1, supported by cDNA: gi_15010743, supported
by cDNA: gi_15293002, supported by cDNA: gi_16226882,
supported by cDNA: gi_16648806, supported by cDNA:
gi_20258872 [Arabidopsis
thaliana]|gi|115783|sp|P04778|CB22_ARATH Chlorophyll A-B
binding protein 2, chloroplast precursor (LHCII type I
CAB-2) (CAB-140) (LHCP)|gi|25299019|pir||A86423 probable
chlorophyll a/b-binding protein [imported] - Arabidopsis
thaliana|gi|16376|emb|CAA27543.1| chlorophyll a/b
binding protein (LHCP AB 140) [Arabidopsis
thaliana]|gi|9972353|gb|AAG10603.1|AC008030_3 Putative
chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23
[Arabidopsis thaliana]|gi|15293003|gb|AAK93612.1|
putative photosystem II type I chlorophyll a/b binding
protein [Arabidopsis
thaliana]|gi|16226883|gb|AAL16289.1|AF428359_1
At1g29930/F1N18_23 [Arabidopsis
thaliana]|gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23
[Arabidopsis thaliana]|gi|20258873|gb|AAM14108.1|
putative chlorophyll a/b-binding protein [Arabidopsis
thaliana]
Length = 267
Score = 54.7 bits (130), Expect = 4e-07
Identities = 28/30 (93%), Positives = 28/30 (93%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA KLSPAASEVLGS
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPAASEVLGS 30
>gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|21387019|gb|AAM47913.1| chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA LSPAASEVLGS
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVLGS 30
>ref|NP_564339.1| photosystem II type I chlorophyll a /b binding protein, putative;
protein id: At1g29910.1, supported by cDNA: gi_17473827
[Arabidopsis thaliana]|gi|18397288|ref|NP_564340.1|
photosystem II type I chlorophyll a /b binding protein,
putative; protein id: At1g29920.1, supported by cDNA:
29298., supported by cDNA: gi_15529225, supported by
cDNA: gi_15809861, supported by cDNA: gi_16974374,
supported by cDNA: gi_17065475, supported by cDNA:
gi_20148486 [Arabidopsis
thaliana]|gi|115767|sp|P04777|CB21_ARATH Chlorophyll A-B
binding protein 165/180, chloroplast precursor (LHCII
type I CAB-165/180) (LHCP)|gi|81603|pir||A29280
chlorophyll a/b-binding protein ab165 - Arabidopsis
thaliana|gi|16368|emb|CAA27540.1| chlorophyll a/b
binding protein (LHCP AB 65) [Arabidopsis
thaliana]|gi|16372|emb|CAA27541.1| chlorophyll a/b
binding protein (LHCP AB 180) [Arabidopsis
thaliana]|gi|9972354|gb|AAG10604.1|AC008030_4
chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|9972355|gb|AAG10605.1|AC008030_5
chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80
[Arabidopsis thaliana]|gi|15809862|gb|AAL06859.1|
At1g29920/F1N18_80 [Arabidopsis
thaliana]|gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80
[Arabidopsis thaliana]|gi|17065476|gb|AAL32892.1|
chlorophyll a/b-binding protein [Arabidopsis
thaliana]|gi|20148487|gb|AAM10134.1| chlorophyll
a/b-binding protein [Arabidopsis
thaliana]|gi|21555860|gb|AAM63949.1| photosystem II type
I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]|gi|22135932|gb|AAM91548.1|
photosystem II type I chlorophyll a/b binding protein,
putative [Arabidopsis
thaliana]|gi|23397170|gb|AAN31868.1| putative
photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
Length = 267
Score = 52.8 bits (125), Expect = 1e-06
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA LSPAASEVLGS
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVLGS 30
>gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 50.4 bits (119), Expect = 7e-06
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA KLSP ASEV G+
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFGT 30
>sp|P13851|CB21_SINAL Chlorophyll A-B binding protein 1, chloroplast precursor (LHCII
type I CAB-1) (LHCP)|gi|282896|pir||S22511 chlorophyll
a/b-binding protein precursor - white
mustard|gi|21138|emb|CAA34459.1| chlorophyll a/b-binding
protein (AA 1-266) [Sinapis
alba]|gi|21140|emb|CAA33903.1| chlorophyll a/b-binding
polypeptide [Sinapis alba]
Length = 266
Score = 50.4 bits (119), Expect = 7e-06
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +1
Query: 28 MAVSTMALSSPAFAGKAAKLSPAASEVLGS 117
MA STMALSSPAFAGKA KLSP ASEV G+
Sbjct: 1 MAASTMALSSPAFAGKAVKLSPGASEVFGT 30
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.313 0.120 0.314
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 15
effective length of database: 409,102,851
effective search space used: 9818468424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)