BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.17513.C1
(1643 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201564.1| RuvB DNA helicase-like protein; protein id... 824 0.0
ref|NP_190552.1| RuvB DNA helicase - like protein; protein ... 708 0.0
gb|AAG44126.1|AF218071_1 reptin [Xenopus laevis] 644 0.0
ref|NP_035434.1| RuvB-like protein 2 [Mus musculus]|gi|4521... 640 0.0
ref|NP_777285.1| RuvB-like protein 2 [Danio rerio]|gi|27733... 640 0.0
>ref|NP_201564.1| RuvB DNA helicase-like protein; protein id: At5g67630.1, supported by
cDNA: gi_16974567 [Arabidopsis
thaliana]|gi|9757884|dbj|BAB08471.1| RuvB DNA
helicase-like protein [Arabidopsis
thaliana]|gi|16974568|gb|AAL31257.1| AT5g67630/K9I9_20
[Arabidopsis thaliana]|gi|22136550|gb|AAM91061.1|
AT5g67630/K9I9_20 [Arabidopsis thaliana]
Length = 469
Score = 824 bits (2129), Expect = 0.0
Identities = 433/469 (92%), Positives = 433/469 (92%)
Frame = +2
Query: 80 MAELKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIR 259
MAELKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIR
Sbjct: 1 MAELKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIR 60
Query: 260 EGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFR 439
EGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFR
Sbjct: 61 EGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFR 120
Query: 440 KAIGVRIKXXXXXXXXXXXXXQIDRPASSGVASKSGKMTMKTTDMETVYDMGAKMIEALN 619
KAIGVRIK QIDRPASSGVASKSGKMTMKTTDMETVYDMGAKMIEALN
Sbjct: 121 KAIGVRIKEETEVIEGEVVEVQIDRPASSGVASKSGKMTMKTTDMETVYDMGAKMIEALN 180
Query: 620 KEKVQSGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVHCVT 799
KEKVQSGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVHCVT
Sbjct: 181 KEKVQSGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVHCVT 240
Query: 800 LHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHM 979
LHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHM
Sbjct: 241 LHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHM 300
Query: 980 LDIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPHGXXXXXXXXXXXXTTQPYT 1159
LDIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPHG TTQPYT
Sbjct: 301 LDIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPHGIPIDLLDRLLIITTQPYT 360
Query: 1160 DDDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSCQKRKGKVVEV 1339
DDDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSCQKRKGKVVEV
Sbjct: 361 DDDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSCQKRKGKVVEV 420
Query: 1340 EDIQRVYRLFLDVRRSMQYLVEYQSQYMFSEPIKNXXXXXXXXXXXMQI 1486
EDIQRVYRLFLDVRRSMQYLVEYQSQYMFSEPIKN MQI
Sbjct: 421 EDIQRVYRLFLDVRRSMQYLVEYQSQYMFSEPIKNDEAAAEDEQDAMQI 469
>ref|NP_190552.1| RuvB DNA helicase - like protein; protein id: At3g49830.1
[Arabidopsis thaliana]|gi|11280158|pir||T46049 RuvB DNA
helicase-like protein - Arabidopsis
thaliana|gi|6723428|emb|CAB66921.1| RuvB DNA
helicase-like protein [Arabidopsis thaliana]
Length = 473
Score = 708 bits (1827), Expect = 0.0
Identities = 363/456 (79%), Positives = 403/456 (87%), Gaps = 1/456 (0%)
Frame = +2
Query: 80 MAELKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIR 259
MAEL+LSE+RDLTR+ERIGAHSHIRGLGLDS LEPRAVSEGMVGQ+KARKAAGV L++IR
Sbjct: 1 MAELRLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELIR 60
Query: 260 EGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFR 439
+GKI+GRAILIAGQPGTGK AIAMG+AKSLG ETPF MIAGSEIFSLEMSKTEALTQ+FR
Sbjct: 61 DGKISGRAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIFSLEMSKTEALTQAFR 120
Query: 440 KAIGVRIKXXXXXXXXXXXXXQIDRPASSGVA-SKSGKMTMKTTDMETVYDMGAKMIEAL 616
KAIGVRIK IDRPASSG + K+GK+TMKTTDME+ +D+G K+IE L
Sbjct: 121 KAIGVRIKEETDVIEGEVVTISIDRPASSGGSVKKTGKITMKTTDMESNFDLGWKLIEPL 180
Query: 617 NKEKVQSGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVHCV 796
+KEKVQSGDVI +D+ GKITKLGRSF+RSRD+D MG++TKFVQCPEGEL+KRKEV+H V
Sbjct: 181 DKEKVQSGDVIVLDRFCGKITKLGRSFTRSRDFDVMGSKTKFVQCPEGELEKRKEVLHSV 240
Query: 797 TLHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAEIVPGVLFIDEVH 976
TLHEIDVINSRTQG+LALFTGDTGEIRSE REQ DTKVAEWREEGKAEIVPGVLFIDEVH
Sbjct: 241 TLHEIDVINSRTQGYLALFTGDTGEIRSETREQSDTKVAEWREEGKAEIVPGVLFIDEVH 300
Query: 977 MLDIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPHGXXXXXXXXXXXXTTQPY 1156
MLDIECFSFLNRALEN+MSPILVVATNRG+TTIRGTNQ S HG TTQPY
Sbjct: 301 MLDIECFSFLNRALENDMSPILVVATNRGMTTIRGTNQISAHGIPIDFLDRLLIITTQPY 360
Query: 1157 TDDDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSCQKRKGKVVE 1336
T D+IR ILEIRCQEEDVEMNEEAKQLLTLIG +TSLRYAIHLI AAAL+C KRKGKVVE
Sbjct: 361 TQDEIRNILEIRCQEEDVEMNEEAKQLLTLIGCNTSLRYAIHLINAAALACLKRKGKVVE 420
Query: 1337 VEDIQRVYRLFLDVRRSMQYLVEYQSQYMFSEPIKN 1444
++DI+RVYRLFLD +RSMQYLVE++S+Y+FS PIKN
Sbjct: 421 IQDIERVYRLFLDTKRSMQYLVEHESEYLFSVPIKN 456
>gb|AAG44126.1|AF218071_1 reptin [Xenopus laevis]
Length = 462
Score = 644 bits (1662), Expect = 0.0
Identities = 321/451 (71%), Positives = 386/451 (85%)
Frame = +2
Query: 80 MAELKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIR 259
MA K+ E RD+TR+ERIGAHSHIRGLGLD ALEPR VS+GMVGQ+ +R+AAGVIL+MI+
Sbjct: 4 MAATKVPEVRDVTRIERIGAHSHIRGLGLDDALEPRQVSQGMVGQLASRRAAGVILEMIK 63
Query: 260 EGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFR 439
EGKIAGRA+LIAGQPGTGKTAIAMGMA++LG +TPF IAGSEIFSLEMSKTEALTQ+FR
Sbjct: 64 EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGSDTPFTAIAGSEIFSLEMSKTEALTQAFR 123
Query: 440 KAIGVRIKXXXXXXXXXXXXXQIDRPASSGVASKSGKMTMKTTDMETVYDMGAKMIEALN 619
++IGVRIK QIDRPA+ G +K GK+T+KTT+MET+YD+G KMIE+L
Sbjct: 124 RSIGVRIKEETEIIEGEVVEVQIDRPAT-GTGAKVGKLTLKTTEMETIYDLGTKMIESLT 182
Query: 620 KEKVQSGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVHCVT 799
KEKVQ+GDVI IDKATGKITKLGR+F+R+RDYDAMG+QTKFVQCP+GELQKRKEVVH V+
Sbjct: 183 KEKVQAGDVITIDKATGKITKLGRAFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVS 242
Query: 800 LHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHM 979
LHEIDVINSRTQGFLALF+GDTGEI+SEVREQI+ KVAEWREEGKAEI+PGVLFIDEVHM
Sbjct: 243 LHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 302
Query: 980 LDIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPHGXXXXXXXXXXXXTTQPYT 1159
LDIECFSFLNRALE++M+P+L++ATNRG+T IRGTN +SPHG +T PY
Sbjct: 303 LDIECFSFLNRALESDMAPVLIMATNRGITRIRGTNYQSPHGIPIDLLDRLLIISTSPYN 362
Query: 1160 DDDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSCQKRKGKVVEV 1339
+ + ++IL+IRC+EEDV+M+E+A +LT IG +TSLRY++ LITAA+L C+KRKG V+V
Sbjct: 363 EKETKQILKIRCEEEDVDMSEDAYTVLTRIGLETSLRYSMQLITAASLVCRKRKGTEVQV 422
Query: 1340 EDIQRVYRLFLDVRRSMQYLVEYQSQYMFSE 1432
+DI+RVY LFLD RS QY+ EYQ +MF+E
Sbjct: 423 DDIKRVYSLFLDESRSTQYMKEYQDAFMFNE 453
>ref|NP_035434.1| RuvB-like protein 2 [Mus musculus]|gi|4521249|dbj|BAA76297.1| DNA
helicase [Mus musculus]
Length = 463
Score = 640 bits (1651), Expect = 0.0
Identities = 321/450 (71%), Positives = 383/450 (84%)
Frame = +2
Query: 83 AELKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIRE 262
A K+ E RD+TR+ERIGAHSHIRGLGLD ALEPR S+GMVGQ+ AR+AAGV+L+MIRE
Sbjct: 6 ATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIRE 65
Query: 263 GKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFRK 442
GKIAGRA+LIAGQPGTGKTAIAMGMA++LG +TPF IAGSEIFSLEMSKTEALTQ+FR+
Sbjct: 66 GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRR 125
Query: 443 AIGVRIKXXXXXXXXXXXXXQIDRPASSGVASKSGKMTMKTTDMETVYDMGAKMIEALNK 622
+IGVRIK QIDRPA+ G SK GK+T+KTT+MET+YD+G KMIE+L K
Sbjct: 126 SIGVRIKEETEIIEGEVVEIQIDRPAT-GTGSKVGKLTLKTTEMETIYDLGTKMIESLTK 184
Query: 623 EKVQSGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVHCVTL 802
+KVQ+GDVI IDKATGKI+KLGRSF+R+RDYDAMG+QTKFVQCP+GELQKRKEVVH V+L
Sbjct: 185 DKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSL 244
Query: 803 HEIDVINSRTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHML 982
HEIDVINSRTQGFLALF+GDTGEI+SEVREQI+ KVAEWREEGKAEI+PGVLFIDEVHML
Sbjct: 245 HEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 304
Query: 983 DIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPHGXXXXXXXXXXXXTTQPYTD 1162
DIE FSFLNRALE++M+P+L++ATNRG+T IRGT+ +SPHG +T PY++
Sbjct: 305 DIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSE 364
Query: 1163 DDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSCQKRKGKVVEVE 1342
D ++IL IRC+EEDVEM+E+A +LT IG +TSLRYAI LITAA+L C+KRKG V+V+
Sbjct: 365 KDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVD 424
Query: 1343 DIQRVYRLFLDVRRSMQYLVEYQSQYMFSE 1432
DI+RVY LFLD RS QY+ EYQ ++F+E
Sbjct: 425 DIKRVYSLFLDESRSTQYMKEYQDAFLFNE 454
>ref|NP_777285.1| RuvB-like protein 2 [Danio rerio]|gi|27733814|gb|AAL18005.1|
RuvB-like DNA helicase reptin [Danio rerio]
Length = 463
Score = 640 bits (1651), Expect = 0.0
Identities = 318/451 (70%), Positives = 386/451 (85%)
Frame = +2
Query: 80 MAELKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIR 259
+A K+ E RD+TR+ERIGAHSHIRGLGLD ALEPR VS+GMVGQ+ +R+AAG+IL+MI+
Sbjct: 5 VATTKVPEVRDITRIERIGAHSHIRGLGLDDALEPRQVSQGMVGQLASRRAAGLILEMIK 64
Query: 260 EGKIAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIFSLEMSKTEALTQSFR 439
+G+IAGRA+LIAGQPGTGKTAIAMG+A+SLG +TPF +AGSEIFSLEMSKTEAL+Q+FR
Sbjct: 65 DGQIAGRAVLIAGQPGTGKTAIAMGIAQSLGPDTPFTALAGSEIFSLEMSKTEALSQAFR 124
Query: 440 KAIGVRIKXXXXXXXXXXXXXQIDRPASSGVASKSGKMTMKTTDMETVYDMGAKMIEALN 619
KAIGVRIK QIDRPA+ G +K GK+T+KTT+MET+YD+G KMIE+L+
Sbjct: 125 KAIGVRIKEETEIIEGEVVEIQIDRPAT-GTGAKVGKLTLKTTEMETIYDLGTKMIESLS 183
Query: 620 KEKVQSGDVIAIDKATGKITKLGRSFSRSRDYDAMGAQTKFVQCPEGELQKRKEVVHCVT 799
KE+VQ+GDVI IDKATGKI+KLGRSF+R+RDYDAMGAQT+FVQCPEGELQKRKEVVH V+
Sbjct: 184 KERVQAGDVITIDKATGKISKLGRSFTRARDYDAMGAQTQFVQCPEGELQKRKEVVHTVS 243
Query: 800 LHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDTKVAEWREEGKAEIVPGVLFIDEVHM 979
LHEIDVINSRTQGFLALF+GDTGEI+SEVREQI+ KV+EWREEGKAEI+PGVLFIDEVHM
Sbjct: 244 LHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVSEWREEGKAEIIPGVLFIDEVHM 303
Query: 980 LDIECFSFLNRALENEMSPILVVATNRGVTTIRGTNQKSPHGXXXXXXXXXXXXTTQPYT 1159
LDIECFSFLNRALE+++SP+L++ATNRG+T IRGTN +SPHG T PYT
Sbjct: 304 LDIECFSFLNRALESDLSPVLIMATNRGITRIRGTNYQSPHGIPIDMLDRLLIIATTPYT 363
Query: 1160 DDDIRKILEIRCQEEDVEMNEEAKQLLTLIGRDTSLRYAIHLITAAALSCQKRKGKVVEV 1339
+ + R+IL+IRC+EEDVE++EEA +LT IG++TSLRYAI LI+ A L C+KR+G V+V
Sbjct: 364 EKETRQILKIRCEEEDVELSEEAHTVLTRIGQETSLRYAIQLISTAGLVCRKRRGTEVQV 423
Query: 1340 EDIQRVYRLFLDVRRSMQYLVEYQSQYMFSE 1432
EDI+RVY LFLD RS QY+ EYQ ++F+E
Sbjct: 424 EDIKRVYSLFLDEARSSQYMKEYQDSFLFNE 454
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 128
effective length of database: 257,790,653
effective search space used: 108014283607
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)