BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.17512.C1
         (845 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_201563.1|  unknown protein; protein id: At5g67620.1 [...   259   3e-68
ref|NP_201095.1|  putative protein; protein id: At5g62900.1 ...    91   2e-17
dbj|BAC24949.1|  OSJNBa0077M12.2 [Oryza sativa (japonica cul...    90   4e-17
gb|AAM08569.1|AC092750_3  Hypothetical protein [Oryza sativa...    90   5e-17
ref|NP_199820.1|  unknown protein; protein id: At5g50090.1 [...    82   1e-14

>ref|NP_201563.1| unknown protein; protein id: At5g67620.1 [Arabidopsis
           thaliana]|gi|9757883|dbj|BAB08470.1|
           gene_id:K9I9.19~unknown protein [Arabidopsis thaliana]
          Length = 182

 Score =  259 bits (663), Expect = 3e-68
 Identities = 135/182 (74%), Positives = 135/182 (74%)
 Frame = +2

Query: 179 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL 358
           MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL
Sbjct: 1   MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL 60

Query: 359 KQLKLLRPDDTLLIGHVYRLVSFEEVLNEFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 538
           KQLKLLRPDDTLLIGHVYRLVSFEEVLNEFA                             
Sbjct: 61  KQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGKLLKEGGGLDLTKKKTKHRKK 120

Query: 539 XLDQETGKVNPNSDPNPNQDGADNAVAGENGGDXXXXXXXXXXXXXXXXXPALHSIPEFG 718
            LDQETGKVNPNSDPNPNQDGADNAVAGENGGD                 PALHSIPEFG
Sbjct: 121 KLDQETGKVNPNSDPNPNQDGADNAVAGENGGDGFMRRSHGGGRGGGGWRPALHSIPEFG 180

Query: 719 SS 724
           SS
Sbjct: 181 SS 182



>ref|NP_201095.1| putative protein; protein id: At5g62900.1 [Arabidopsis
           thaliana]|gi|10177468|dbj|BAB10859.1|
           gene_id:MQB2.22~unknown protein [Arabidopsis
           thaliana]|gi|13877823|gb|AAK43989.1|AF370174_1 unknown
           protein [Arabidopsis
           thaliana]|gi|22136878|gb|AAM91783.1| unknown protein
           [Arabidopsis thaliana]
          Length = 161

 Score = 90.9 bits (224), Expect = 2e-17
 Identities = 46/87 (52%), Positives = 66/87 (74%)
 Frame = +2

Query: 179 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKGLPL 358
           MGNCQAAEAAT +I  P + K  R Y +V AS+++KS+PGH+VA++++S  + +   L +
Sbjct: 1   MGNCQAAEAATTVIQQP-DGKSVRFYCTVNASEVIKSHPGHHVALLLSS-AVPHGGSLRV 58

Query: 359 KQLKLLRPDDTLLIGHVYRLVSFEEVL 439
            ++KLLRP D LL+GHVYRL+S EEV+
Sbjct: 59  TRIKLLRPSDNLLLGHVYRLISSEEVM 85



>dbj|BAC24949.1| OSJNBa0077M12.2 [Oryza sativa (japonica cultivar-group)]
          Length = 189

 Score = 90.1 bits (222), Expect = 4e-17
 Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 23/109 (21%)
 Frame = +2

Query: 179 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKG--- 349
           MGNCQAAE A V+I HP   KVER+YW  TA+D+M+SNPGHYVA+V+   +  +  G   
Sbjct: 1   MGNCQAAEVAAVVIQHPG-GKVERLYWPATAADVMRSNPGHYVALVLLRVSASSSGGGGG 59

Query: 350 --------------------LPLKQLKLLRPDDTLLIGHVYRLVSFEEV 436
                                 + ++KLL+P +TLL+G VYRLV+ +EV
Sbjct: 60  GKAEHSAVGAAVGDESGGAAAKITKIKLLKPKETLLLGKVYRLVTSQEV 108



>gb|AAM08569.1|AC092750_3 Hypothetical protein [Oryza sativa (japonica
           cultivar-group)]|gi|20087082|gb|AAM10755.1|AC112514_8
           Hypothetical protein [Oryza sativa]
          Length = 218

 Score = 89.7 bits (221), Expect = 5e-17
 Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 23/113 (20%)
 Frame = +2

Query: 179 MGNCQAAEAATVLIHHPAEN----------------KVERIYWSVTASDIMKSNPGHYVA 310
           MGNCQAA+AA V+I HP+ +                +VER Y +V+A+ +M +NPGHYVA
Sbjct: 1   MGNCQAADAAAVVIQHPSSSSSSSSSSGNGGGGGGGRVERAYGAVSAAAVMAANPGHYVA 60

Query: 311 VVV----TSPTMKNEKG---LPLKQLKLLRPDDTLLIGHVYRLVSFEEVLNEF 448
            VV    T+P             ++LKLLRPDDTL++G VYRLV+FE+VL +F
Sbjct: 61  EVVRPVATAPAATAATASAPAARRRLKLLRPDDTLVLGGVYRLVTFEDVLKQF 113



>ref|NP_199820.1| unknown protein; protein id: At5g50090.1 [Arabidopsis
           thaliana]|gi|10177220|dbj|BAB10295.1|
           gene_id:MPF21.10~unknown protein [Arabidopsis thaliana]
          Length = 159

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 41/92 (44%), Positives = 63/92 (67%), Gaps = 5/92 (5%)
 Frame = +2

Query: 179 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKG--- 349
           MGNCQA + A V+I HP   K E++   V+AS +MK NPGH V++++++  + +      
Sbjct: 1   MGNCQAVDTARVVIQHP-NGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGHG 59

Query: 350 --LPLKQLKLLRPDDTLLIGHVYRLVSFEEVL 439
             L L ++KLLRP DTL++GHVYRL++ +EV+
Sbjct: 60  GPLRLTRIKLLRPTDTLVLGHVYRLITTKEVM 91



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 121
effective length of database: 267,163,975
effective search space used: 42746236000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)