BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.17510.C1
         (476 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567045.1|  Expressed protein; protein id: At3g57165.1...    38   0.046
ref|NP_777216.1|  prostaglandin D2 synthase 21kDa (brain) [B...    31   5.7  
ref|NP_147202.1|  hypothetical protein [Aeropyrum pernix]|gi...    31   5.7  

>ref|NP_567045.1| Expressed protein; protein id: At3g57165.1, supported by cDNA:
           255818. [Arabidopsis thaliana]
          Length = 115

 Score = 38.1 bits (87), Expect = 0.046
 Identities = 31/75 (41%), Positives = 36/75 (47%), Gaps = 1/75 (1%)
 Frame = +2

Query: 80  LLPKGIHLRTVILRPVILQPVIHRQDML-RDTLHKVIXXXXXXXXXXXXXXPVCLKDVWL 256
           +L K I LR  IL  VIL  VI R+  L +D L+KV                VCLKDV L
Sbjct: 20  ILSKDILLRRDILNKVILLKVILRRGTLNKDILNKVTHLSNNSNRNTVL---VCLKDVLL 76

Query: 257 RSVVAVSWMHVSDRR 301
              V VSW   S+ R
Sbjct: 77  LCAVTVSWTLASEWR 91



>ref|NP_777216.1| prostaglandin D2 synthase 21kDa (brain) [Bos
           taurus]|gi|3914330|sp|O02853|PGHD_BOVIN Prostaglandin-H2
           D-isomerase precursor (Prostaglandin-D synthase)
           (Glutathione-independent PGD synthetase) (Prostaglandin
           D2 synthase) (PGD2 synthase) (PGDS2)
           (PGDS)|gi|2196434|dbj|BAA20431.1| prostaglandin D
           synthase [Bos taurus]
          Length = 191

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 15/66 (22%), Positives = 33/66 (49%), Gaps = 5/66 (7%)
 Frame = -3

Query: 456 DYERER*LWSESIKHKIPKFEL-----KEDNNRRKIVEHYITYMRK*KLTEATYIIILRS 292
           DYE    L++E ++     F +     +  N R ++ EH+ T+ +    TE   + + ++
Sbjct: 124 DYETYALLYTEGVRGPGQDFRMATLYSRSQNPRAEVKEHFTTFAKSLGFTEEGIVFLPKT 183

Query: 291 ETCIQE 274
           + C++E
Sbjct: 184 DKCMEE 189



>ref|NP_147202.1| hypothetical protein [Aeropyrum pernix]|gi|7517297|pir||A72733
           hypothetical protein APES012 - Aeropyrum pernix (strain
           K1)|gi|5104041|dbj|BAA79357.1| 75aa long hypothetical
           protein [Aeropyrum pernix]
          Length = 75

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 180 LCRVSLSISWRWITGWRITGR 118
           L  +S+S+ WRW T WR T R
Sbjct: 35  LIGISVSLGWRWRTSWRCTAR 55



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 113
effective length of database: 277,876,343
effective search space used: 12504435435
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)