BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.17509.C1
         (760 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_201560.1|  putative protein; protein id: At5g67590.1,...   283   2e-75
gb|AAM63888.1|  unknown [Arabidopsis thaliana]                    278   6e-74
dbj|BAC20889.1|  NADH-ubiquinone oxidoreductase 18 kDa subun...   181   1e-44
ref|XP_215484.1|  similar to NADH-ubiquinone oxidoreductase ...   108   6e-23
gb|AAH05270.1|AAH05270  NADH dehydrogenase (ubiquinone) Fe-S...   108   8e-23

>ref|NP_201560.1| putative protein; protein id: At5g67590.1, supported by cDNA:
           28455. [Arabidopsis thaliana]|gi|9757880|dbj|BAB08467.1|
           contains similarity to NADH dehydrogenase chain
           CI-18~gene_id:K9I9.16 [Arabidopsis
           thaliana]|gi|26452345|dbj|BAC43258.1| unknown protein
           [Arabidopsis thaliana]|gi|28372842|gb|AAO39903.1|
           At5g67590 [Arabidopsis thaliana]
          Length = 154

 Score =  283 bits (723), Expect = 2e-75
 Identities = 136/154 (88%), Positives = 136/154 (88%)
 Frame = +1

Query: 97  MALCXXXXXXXXXXXXXXXXXXPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPA 276
           MALC                  PFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPA
Sbjct: 1   MALCATTQRTIRIAATLRRVARPFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPA 60

Query: 277 RTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAER 456
           RTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAER
Sbjct: 61  RTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAER 120

Query: 457 HGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQPEN 558
           HGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQPEN
Sbjct: 121 HGWDYKVKKPNTPLLKVKSYSDNFKWKGNPQPEN 154



>gb|AAM63888.1| unknown [Arabidopsis thaliana]
          Length = 154

 Score =  278 bits (711), Expect = 6e-74
 Identities = 132/132 (100%), Positives = 132/132 (100%)
 Frame = +1

Query: 163 PFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTL 342
           PFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTL
Sbjct: 23  PFATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTL 82

Query: 343 KWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSD 522
           KWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSD
Sbjct: 83  KWENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSD 142

Query: 523 NFKWKGNPQPEN 558
           NFKWKGNPQPEN
Sbjct: 143 NFKWKGNPQPEN 154



>dbj|BAC20889.1| NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial
           precursor-like protein~contains ESTs
           C99649(E20996),C99648(E20996) [Oryza sativa (japonica
           cultivar-group)]|gi|24414031|dbj|BAC22281.1|
           NADH-ubiquinone oxidoreductase 18 kDa subunit,
           mitochondrial precursor-like protein~contains ESTs
           C99649(E20996),C99648(E20996) [Oryza sativa (japonica
           cultivar-group)]
          Length = 145

 Score =  181 bits (459), Expect = 1e-44
 Identities = 85/112 (75%), Positives = 99/112 (87%)
 Frame = +1

Query: 169 ATDAVVESDYKRGEIGKVSGIPEEHLSRKVIIYSPARTATQSGSGKLGKWKINFVSTLKW 348
           A+DA+VE   K GEIG VSGIPEEHL RKV+IYSPARTA+Q GSGK+G+WKINFVST KW
Sbjct: 31  ASDALVE--IKPGEIGMVSGIPEEHLRRKVVIYSPARTASQQGSGKVGRWKINFVSTQKW 88

Query: 349 ENPLMGWTSTGDPYANVGDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLK 504
           ENPLMGWTSTGDPYANVG++ L FDS ++AK+FAE+HGWDY V+K +TPLLK
Sbjct: 89  ENPLMGWTSTGDPYANVGEAGLTFDSADSAKAFAEKHGWDYVVRKRHTPLLK 140



>ref|XP_215484.1| similar to NADH-ubiquinone oxidoreductase 18 kDa subunit,
           mitochondrial precursor (Complex I-18 kDa) (CI-18 kDa)
           (Complex I-AQDQ) (CI-AQDQ) [Rattus norvegicus]
          Length = 175

 Score =  108 bits (271), Expect = 6e-23
 Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
 Frame = +1

Query: 208 EIGKVSGIPEEHL-SRKVIIYSPARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGD 384
           ++  ++G+PEEH+ +RKV I+ PAR   QSG     KWK+ F +  +WENPLMGW ST D
Sbjct: 60  DVTPLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 385 PYANVGDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSDNFKW 534
           P +N+    L F ++E A +FAE+HGW Y V+    P  K KSY  NF W
Sbjct: 120 PLSNM---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166



>gb|AAH05270.1|AAH05270 NADH dehydrogenase (ubiquinone) Fe-S protein 4 (18kD)
           (NADH-coenzyme Q reductase) [Homo sapiens]
          Length = 175

 Score =  108 bits (270), Expect = 8e-23
 Identities = 52/110 (47%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
 Frame = +1

Query: 208 EIGKVSGIPEEHL-SRKVIIYSPARTATQSGSGKLGKWKINFVSTLKWENPLMGWTSTGD 384
           +I  ++G+PEEH+ +RKV I+ PAR   QSG     KWK+ F +  +WENPLMGW ST D
Sbjct: 60  DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTAD 119

Query: 385 PYANVGDSALAFDSEEAAKSFAERHGWDYKVKKPNTPLLKVKSYSDNFKW 534
           P +N+    L F ++E A SFAE++GW Y +++   P  K KSY  NF W
Sbjct: 120 PLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 120
effective length of database: 268,503,021
effective search space used: 35442398772
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)