BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AY077668.f
(900 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201559.1| putative protein; protein id: At5g67580.1,... 467 e-130
gb|AAL73441.1|U83837_1 telomere repeat binding factor 2 [Ar... 465 e-130
ref|NP_190554.1| MYB -like protein; protein id: At3g49850.1... 284 1e-75
gb|AAM65540.1| DNA-binding protein PcMYB1, putative [Arabid... 186 5e-46
gb|AAL73438.1|U83624_1 telomere repeat binding factor 1 [Ar... 185 7e-46
>ref|NP_201559.1| putative protein; protein id: At5g67580.1, supported by cDNA:
gi_14532517, supported by cDNA: gi_18481425, supported
by cDNA: gi_18655380 [Arabidopsis
thaliana]|gi|9757879|dbj|BAB08466.1| contains similarity
to MYB-like DNA-binding protein~gene_id:K9I9.15
[Arabidopsis thaliana]|gi|14532518|gb|AAK63987.1|
AT5g67580/K9I9_15 [Arabidopsis
thaliana]|gi|18481428|gb|AAL73442.1|U83836_1 telomere
repeat binding factor 2 [Arabidopsis
thaliana]|gi|18655381|gb|AAL76146.1| AT5g67580/K9I9_15
[Arabidopsis thaliana]
Length = 299
Score = 467 bits (1201), Expect = e-130
Identities = 238/299 (79%), Positives = 238/299 (79%)
Frame = +1
Query: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA 180
MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA
Sbjct: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA 60
Query: 181 LWGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAKXXXXXXXXXXXXRTCASKR 360
LWGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAK RTCASKR
Sbjct: 61 LWGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAKPTSPGGSGGGSPRTCASKR 120
Query: 361 SITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLVK 540
SITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLVK
Sbjct: 121 SITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLVK 180
Query: 541 IKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELYMIKGMT 720
IKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELYMIKGMT
Sbjct: 181 IKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELYMIKGMT 240
Query: 721 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKFRIRNHPW 897
LKFRIRNHPW
Sbjct: 241 AQEAAEAAARAVAEAEFAITEAEQAAKEAERAEAEAEAAQIFAKAAMKALKFRIRNHPW 299
>gb|AAL73441.1|U83837_1 telomere repeat binding factor 2 [Arabidopsis thaliana]
Length = 299
Score = 465 bits (1197), Expect = e-130
Identities = 237/299 (79%), Positives = 238/299 (79%)
Frame = +1
Query: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA 180
MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSD+EFSLILKSRSNVDLKDKWRNISVTA
Sbjct: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDSEFSLILKSRSNVDLKDKWRNISVTA 60
Query: 181 LWGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAKXXXXXXXXXXXXRTCASKR 360
LWGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAK RTCASKR
Sbjct: 61 LWGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAKPTSPGGSGGGSPRTCASKR 120
Query: 361 SITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLVK 540
SITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLVK
Sbjct: 121 SITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLVK 180
Query: 541 IKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELYMIKGMT 720
IKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELYMIKGMT
Sbjct: 181 IKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELYMIKGMT 240
Query: 721 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKFRIRNHPW 897
LKFRIRNHPW
Sbjct: 241 AQEAAEAAARAVAEAEFAITEAEQAAKEAERAEAEAEAAQIFAKAAMKALKFRIRNHPW 299
>ref|NP_190554.1| MYB -like protein; protein id: At3g49850.1, supported by cDNA:
gi_16604534, supported by cDNA: gi_18086497, supported
by cDNA: gi_18481421, supported by cDNA: gi_18958039
[Arabidopsis thaliana]|gi|11358523|pir||T46051 MYB-like
protein - Arabidopsis
thaliana|gi|6723430|emb|CAB66923.1| MYB-like protein
[Arabidopsis thaliana]|gi|16604535|gb|AAL24273.1|
AT3g49850/T16K5_200 [Arabidopsis
thaliana]|gi|18086498|gb|AAL57702.1| AT3g49850/T16K5_200
[Arabidopsis
thaliana]|gi|18481422|gb|AAL73439.1|U83839_1 telomere
repeat binding factor 3 [Arabidopsis
thaliana]|gi|18481424|gb|AAL73440.1|U83838_1 telomere
repeat binding factor 3 [Arabidopsis
thaliana]|gi|18958040|gb|AAL79593.1| AT3g49850/T16K5_200
[Arabidopsis thaliana]
Length = 295
Score = 284 bits (727), Expect = 1e-75
Identities = 155/241 (64%), Positives = 178/241 (73%), Gaps = 1/241 (0%)
Frame = +1
Query: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA 180
MGAPK KWTPEEE ALKAGVLKHGTGKWRTILSD +S ILKSRSNVDLKDKWRNISVTA
Sbjct: 1 MGAPKLKWTPEEETALKAGVLKHGTGKWRTILSDPVYSTILKSRSNVDLKDKWRNISVTA 60
Query: 181 LWGSRKKAKLALKRTP-PGTKQDDNNTALTIVALTNDDERAKXXXXXXXXXXXXRTCASK 357
LWGSRKKAKLALKRTP G++QDDN TA+TIV+L N D + +C
Sbjct: 61 LWGSRKKAKLALKRTPLSGSRQDDNATAITIVSLANGDVGGQQIDAPSPPAG---SCEPP 117
Query: 358 RSITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLV 537
R TS+DKII EAIT+L+ G D SI +YIEENFK P+MKR V RLK+L++ GTLV
Sbjct: 118 RPSTSVDKIILEAITSLKRPFGPDGKSILMYIEENFKMQPDMKRLVTSRLKYLTNVGTLV 177
Query: 538 KIKHKYRFSSNFIPAGARQKAPQLFLEGNNKKDPTKPEENGANSLTKFRVDGELYMIKGM 717
K KHKYR S N++ G Q++PQL LEGN + P KPEENG +LTK +V GE+ MI GM
Sbjct: 178 KKKHKYRISQNYMAEGEGQRSPQLLLEGNKENTP-KPEENGVKNLTKSQVGGEV-MIMGM 235
Query: 718 T 720
T
Sbjct: 236 T 236
>gb|AAM65540.1| DNA-binding protein PcMYB1, putative [Arabidopsis thaliana]
Length = 300
Score = 186 bits (471), Expect = 5e-46
Identities = 107/242 (44%), Positives = 151/242 (62%), Gaps = 3/242 (1%)
Frame = +1
Query: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA 180
MGAPKQKWT EEE+ALK+GV+KHG GKWRTIL D EFS +L RSNVDLKDKWRN+SV A
Sbjct: 1 MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMA 60
Query: 181 L-WGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAKXXXXXXXXXXXXRTCASK 357
WGSR+K++LA+KRT KQ++N+ ALT +L +D+E +
Sbjct: 61 NGWGSREKSRLAVKRTFSLPKQEENSLALT-NSLQSDEENVDATSGLQVSS----NPPPR 115
Query: 358 RSITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLV 537
R LD +I EAI L+E G ++T+I YIE+ + PP+ KR ++ +LK+L+S G LV
Sbjct: 116 RPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLV 175
Query: 538 KIKHKYRFSSNFIPAGARQKAPQLF--LEGNNKKDPTKPEENGANSLTKFRVDGELYMIK 711
K+K KYR ++ + R+K +F + + K + + N T+ ++D E+ +K
Sbjct: 176 KVKRKYRIPNSTSLSSHRRKGLGVFGGKQRTSSLPSPKTDIDEVNFQTRSQIDTEIARMK 235
Query: 712 GM 717
M
Sbjct: 236 SM 237
>gb|AAL73438.1|U83624_1 telomere repeat binding factor 1 [Arabidopsis thaliana]
Length = 300
Score = 185 bits (470), Expect = 7e-46
Identities = 107/242 (44%), Positives = 151/242 (62%), Gaps = 3/242 (1%)
Frame = +1
Query: 1 MGAPKQKWTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKSRSNVDLKDKWRNISVTA 180
MGAPKQKWT EEE+ALK+GV+KHG GKWRTIL D EFS +L RSNVDLKDKWRN+SV A
Sbjct: 1 MGAPKQKWTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNMSVMA 60
Query: 181 L-WGSRKKAKLALKRTPPGTKQDDNNTALTIVALTNDDERAKXXXXXXXXXXXXRTCASK 357
WGSR+K++LA+KRT KQ++N+ ALT +L +D+E +
Sbjct: 61 NGWGSREKSRLAVKRTFSLPKQEENSLALT-NSLQSDEENVDATSGLQVSS----NPPPR 115
Query: 358 RSITSLDKIIFEAITNLRELRGSDRTSIFLYIEENFKTPPNMKRHVAVRLKHLSSNGTLV 537
R LD +I EAI L+E G ++T+I YIE+ + PP+ KR ++ +LK+L+S G LV
Sbjct: 116 RPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQYHAPPDFKRLLSTKLKYLTSCGKLV 175
Query: 538 KIKHKYRFSSNFIPAGARQKAPQLF--LEGNNKKDPTKPEENGANSLTKFRVDGELYMIK 711
K+K KYR ++ + R+K +F + + K + + N T+ ++D E+ +K
Sbjct: 176 KVKRKYRIPNSTPLSSHRRKGLGVFGGKQRTSSLPSPKTDIDEVNFQTRSQIDTEIARMK 235
Query: 712 GM 717
M
Sbjct: 236 SM 237
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 122
effective length of database: 265,824,929
effective search space used: 47051012433
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)