BLAST Search Results

BLASTX 1.4.13-Paracel [2002-12-12] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PTA.sd.17506.C1 (802 letters) Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 1,339,046 sequences; 429,188,541 total letters Searching...................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_569051.1|  ADP-ribosylation factor-like protein; prot...   371   e-102
ref|NP_190556.2|  ADP-RIBOSYLATION FACTOR -like protein; pro...   357   1e-97
dbj|BAB08464.1|  ADP-ribosylation factor-like protein [Arabi...   330   1e-89
ref|NP_568553.1|  ADP-ribosylation factor - like protein; pr...   314   8e-85
pir||T46053  ADP-ribosylation factor-like protein T16K5.220 ...   280   1e-74

>ref|NP_569051.1| ADP-ribosylation factor-like protein; protein id: At5g67560.1,
           supported by cDNA: 35979., supported by cDNA:
           gi_15450887, supported by cDNA: gi_17978674 [Arabidopsis
           thaliana]|gi|15450888|gb|AAK96715.1| ADP-ribosylation
           factor-like protein [Arabidopsis
           thaliana]|gi|17978675|gb|AAL47331.1| ADP-ribosylation
           factor-like protein [Arabidopsis
           thaliana]|gi|21593081|gb|AAM65030.1| ADP-ribosylation
           factor-like protein [Arabidopsis thaliana]
          Length = 184

 Score =  371 bits (952), Expect = e-102
 Identities = 184/184 (100%), Positives = 184/184 (100%)
 Frame = +1

Query: 1   MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 180
           MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1   MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60

Query: 181 KGSVTIKLWDLGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 360
           KGSVTIKLWDLGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN
Sbjct: 61  KGSVTIKLWDLGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 120

Query: 361 GIPLLVLGNKIDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 540
           GIPLLVLGNKIDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 180

Query: 541 KSSN 552
           KSSN
Sbjct: 181 KSSN 184

>ref|NP_190556.2| ADP-RIBOSYLATION FACTOR -like protein; protein id: At3g49870.1,
           supported by cDNA: gi_18252988 [Arabidopsis
           thaliana]|gi|18252989|gb|AAL62421.1| ADP-RIBOSYLATION
           FACTOR -like protein [Arabidopsis
           thaliana]|gi|21389677|gb|AAM48037.1| ADP-ribosylation
           factor-like protein [Arabidopsis thaliana]
          Length = 184

 Score =  357 bits (915), Expect = 1e-97
 Identities = 177/184 (96%), Positives = 180/184 (97%)
 Frame = +1

Query: 1   MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 180
           MGL +A LNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT
Sbjct: 1   MGLLEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 60

Query: 181 KGSVTIKLWDLGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 360
           KG+VTIKLWDLGGQPRFRSMWERYCR+VSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN
Sbjct: 61  KGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 120

Query: 361 GIPLLVLGNKIDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 540
           GIPLLVLGNKIDKPGALSKEALTDEMGL SLTDREVCCFMISCKNSTNIDQVIDWLVKHS
Sbjct: 121 GIPLLVLGNKIDKPGALSKEALTDEMGLTSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 180

Query: 541 KSSN 552
           KS N
Sbjct: 181 KSKN 184

>dbj|BAB08464.1| ADP-ribosylation factor-like protein [Arabidopsis thaliana]
          Length = 165

 Score =  330 bits (847), Expect = 1e-89
 Identities = 165/165 (100%), Positives = 165/165 (100%)
 Frame = +1

Query: 58  MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRS 237
           MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRS
Sbjct: 1   MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRS 60

Query: 238 MWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNKIDKPGALSK 417
           MWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNKIDKPGALSK
Sbjct: 61  MWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNKIDKPGALSK 120

Query: 418 EALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKSSN 552
           EALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKSSN
Sbjct: 121 EALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHSKSSN 165

>ref|NP_568553.1| ADP-ribosylation factor - like protein; protein id: At5g37680.1,
           supported by cDNA: 14234., supported by cDNA:
           gi_17065163 [Arabidopsis
           thaliana]|gi|17065164|gb|AAL32736.1| ADP-ribosylation
           factor-like protein [Arabidopsis
           thaliana]|gi|21387117|gb|AAM47962.1| ADP-ribosylation
           factor-like protein [Arabidopsis
           thaliana]|gi|21553410|gb|AAM62503.1| ADP-ribosylation
           factor-like protein [Arabidopsis thaliana]
          Length = 184

 Score =  314 bits (805), Expect = 8e-85
 Identities = 147/183 (80%), Positives = 172/183 (93%)
 Frame = +1

Query: 1   MGLWDALLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVT 180
           MGLWD+LLNWLRSLFFKQEMELSL+GLQNAGKTSLVN +ATGGYSEDMIPTVGFNMRKVT
Sbjct: 1   MGLWDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNAIATGGYSEDMIPTVGFNMRKVT 60

Query: 181 KGSVTIKLWDLGGQPRFRSMWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLN 360
           KG+VTIK+WDLGGQ RFR+MWERYCR VSAIVYV+DAAD D++ +S+SEL+DLL+K SLN
Sbjct: 61  KGNVTIKIWDLGGQRRFRTMWERYCRGVSAIVYVIDAADRDSVPISRSELNDLLTKPSLN 120

Query: 361 GIPLLVLGNKIDKPGALSKEALTDEMGLKSLTDREVCCFMISCKNSTNIDQVIDWLVKHS 540
           GIPLL+LGNKIDK  ALSK+AL D++GL+S+TDREVCC+MISCK+S NID VIDWL+KHS
Sbjct: 121 GIPLLILGNKIDKSEALSKQALVDQLGLESVTDREVCCYMISCKDSINIDAVIDWLIKHS 180

Query: 541 KSS 549
           +++
Sbjct: 181 RTA 183

>pir||T46053 ADP-ribosylation factor-like protein T16K5.220 - Arabidopsis
           thaliana|gi|6723432|emb|CAB66925.1| ADP-RIBOSYLATION
           FACTOR-like protein [Arabidopsis thaliana]
          Length = 190

 Score =  280 bits (717), Expect = 1e-74
 Identities = 151/192 (78%), Positives = 154/192 (79%), Gaps = 27/192 (14%)
 Frame = +1

Query: 58  MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGSVTIKLWDLGGQPRFRS 237
           MELSLIGLQNAGKTSLVNVVA   Y   +   VGFNMRKVTKG+VTIKLWDLGGQPRFRS
Sbjct: 1   MELSLIGLQNAGKTSLVNVVAR--YLLCVFDQVGFNMRKVTKGNVTIKLWDLGGQPRFRS 58

Query: 238 MWERYCRSVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNKIDKPGALSK 417
           MWERYCR+VSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNKIDKPGALSK
Sbjct: 59  MWERYCRAVSAIVYVVDAADPDNLSVSKSELHDLLSKTSLNGIPLLVLGNKIDKPGALSK 118

Query: 418 EALTDEM---------------------------GLKSLTDREVCCFMISCKNSTNIDQV 516
           EALTDEM                           GL SLTDREVCCFMISCKNSTNIDQV
Sbjct: 119 EALTDEMYSSLSSSKPSSKGTTLGRSDYVCYRCRGLTSLTDREVCCFMISCKNSTNIDQV 178

Query: 517 IDWLVKHSKSSN 552
           IDWLVKHSKS N
Sbjct: 179 IDWLVKHSKSKN 190

  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 121
effective length of database: 267,163,975
effective search space used: 38738776375
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

BLAST Search Results