BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.17505.C1
(1912 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201555.2| glycosyl hydrolase family 43; protein id: ... 904 0.0
dbj|BAB08462.1| emb|CAB66926.1~gene_id:K9I9.10~strong simil... 879 0.0
ref|NP_190557.1| glycosyl hydrolase family 43; protein id: ... 670 0.0
dbj|BAC06214.1| P0018C10.15 [Oryza sativa (japonica cultiva... 573 e-162
emb|CAA10760.1| hypothetical protein [Arabidopsis thaliana] 510 e-143
>ref|NP_201555.2| glycosyl hydrolase family 43; protein id: At5g67540.1, supported by
cDNA: gi_17933294, supported by cDNA: gi_20856123
[Arabidopsis
thaliana]|gi|17933295|gb|AAL48230.1|AF446357_1
AT5g67540/K9I9_10 [Arabidopsis
thaliana]|gi|20856124|gb|AAM26649.1| AT5g67540/K9I9_10
[Arabidopsis thaliana]
Length = 466
Score = 904 bits (2335), Expect = 0.0
Identities = 432/466 (92%), Positives = 432/466 (92%)
Frame = +2
Query: 287 MSGYSSSAGLRGFAGGCRYSLLTIVWTVVGFFLVAHLISLYSRKDNNIHQQVSSDQLQVV 466
MSGYSSSAGLRGFAGGCRYSLLTIVWTVVGFFLVAHLISLYSRKDNNIHQQVSSDQLQVV
Sbjct: 1 MSGYSSSAGLRGFAGGCRYSLLTIVWTVVGFFLVAHLISLYSRKDNNIHQQVSSDQLQVV 60
Query: 467 HHLAHPXXXXXXXXXXXXXXMXXXXXXXXXXXXXXXXXXXXLVEEFLDDKSPIRHLFFPG 646
HHLAHP M LVEEFLDDKSPIRHLFFPG
Sbjct: 61 HHLAHPIVRELIRVEEEVLRMPPPRKRSPRTSKRRSRKPIPLVEEFLDDKSPIRHLFFPG 120
Query: 647 IKTAAFGPTKDMGNETSYYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYGEYKDGPT 826
IKTAAFGPTKDMGNETSYYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYGEYKDGPT
Sbjct: 121 IKTAAFGPTKDMGNETSYYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYGEYKDGPT 180
Query: 827 YHAHKKGPARVDIIGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNE 1006
YHAHKKGPARVDIIGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNE
Sbjct: 181 YHAHKKGPARVDIIGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNE 240
Query: 1007 KTEKYVMWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAY 1186
KTEKYVMWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAY
Sbjct: 241 KTEKYVMWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAY 300
Query: 1187 LIYSSEVNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAP 1366
LIYSSEVNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAP
Sbjct: 301 LIYSSEVNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAP 360
Query: 1367 NEALAHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNP 1546
NEALAHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNP
Sbjct: 361 NEALAHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNP 420
Query: 1547 ADLRDSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 1684
ADLRDSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP
Sbjct: 421 ADLRDSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 466
>dbj|BAB08462.1| emb|CAB66926.1~gene_id:K9I9.10~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 471
Score = 879 bits (2270), Expect = 0.0
Identities = 419/453 (92%), Positives = 419/453 (92%)
Frame = +2
Query: 326 AGGCRYSLLTIVWTVVGFFLVAHLISLYSRKDNNIHQQVSSDQLQVVHHLAHPXXXXXXX 505
AGGCRYSLLTIVWTVVGFFLVAHLISLYSRKDNNIHQQVSSDQLQVVHHLAHP
Sbjct: 19 AGGCRYSLLTIVWTVVGFFLVAHLISLYSRKDNNIHQQVSSDQLQVVHHLAHPIVRELIR 78
Query: 506 XXXXXXXMXXXXXXXXXXXXXXXXXXXXLVEEFLDDKSPIRHLFFPGIKTAAFGPTKDMG 685
M LVEEFLDDKSPIRHLFFPGIKTAAFGPTKDMG
Sbjct: 79 VEEEVLRMPPPRKRSPRTSKRRSRKPIPLVEEFLDDKSPIRHLFFPGIKTAAFGPTKDMG 138
Query: 686 NETSYYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYGEYKDGPTYHAHKKGPARVDI 865
NETSYYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYGEYKDGPTYHAHKKGPARVDI
Sbjct: 139 NETSYYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYGEYKDGPTYHAHKKGPARVDI 198
Query: 866 IGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNEKTEKYVMWMHIDD 1045
IGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNEKTEKYVMWMHIDD
Sbjct: 199 IGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNEKTEKYVMWMHIDD 258
Query: 1046 ANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYSSEVNSVLHI 1225
ANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYSSEVNSVLHI
Sbjct: 259 ANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYSSEVNSVLHI 318
Query: 1226 GPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAPNEALAHAAESIMG 1405
GPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAPNEALAHAAESIMG
Sbjct: 319 GPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAPNEALAHAAESIMG 378
Query: 1406 PWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNPADLRDSRYVWLPL 1585
PWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNPADLRDSRYVWLPL
Sbjct: 379 PWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNPADLRDSRYVWLPL 438
Query: 1586 VIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 1684
VIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP
Sbjct: 439 VIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 471
>ref|NP_190557.1| glycosyl hydrolase family 43; protein id: At3g49880.1, supported by
cDNA: gi_17381059, supported by cDNA: gi_20466058
[Arabidopsis thaliana]|gi|11280711|pir||T46054
hypothetical protein T16K5.230 - Arabidopsis
thaliana|gi|6723433|emb|CAB66926.1| putative protein
[Arabidopsis thaliana]|gi|17381060|gb|AAL36342.1| unknown
protein [Arabidopsis thaliana]|gi|20466059|gb|AAM20364.1|
unknown protein [Arabidopsis thaliana]
Length = 466
Score = 670 bits (1728), Expect = 0.0
Identities = 323/450 (71%), Positives = 359/450 (79%), Gaps = 1/450 (0%)
Frame = +2
Query: 338 RYSLLTIVWTVVGFFLVAHLISLYSRKDNNIHQQVSSDQLQVVHHLAHPXXXXXXXXXXX 517
R S +V TVVG + HL LYSR ++ +S L + HP
Sbjct: 16 RCSPFGLVSTVVGCVFMIHLTMLYSRS-YSVDLDLSPQLL-----IHHPIVRELERVEEE 69
Query: 518 XXXMXXXXXXXXXXXXXXXXXXXXLVEEFLDDKSPIRHLFFPGIKTAAFGPTKDMGNETS 697
M LVEEFLD+ S IRHLFFP +K+A FGPTK+ N+TS
Sbjct: 70 NIHMPPPRKRSPRAIKRKPKTPTTLVEEFLDENSQIRHLFFPDMKSA-FGPTKEDTNDTS 128
Query: 698 -YYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYGEYKDGPTYHAHKKGPARVDIIGV 874
YYFPG+IW DT+GNPIQAHGGGIL D S YYWYGEYKDGPTY +HKKG ARVDIIGV
Sbjct: 129 HYYFPGRIWTDTEGNPIQAHGGGILFDDISKVYYWYGEYKDGPTYLSHKKGAARVDIIGV 188
Query: 875 GCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNEKTEKYVMWMHIDDANY 1054
GCYSSKDLWTWKNEG+VL AEET++THDLHKSNVLERPKVIYN T KYVMWMHIDDANY
Sbjct: 189 GCYSSKDLWTWKNEGVVLAAEETDETHDLHKSNVLERPKVIYNSDTGKYVMWMHIDDANY 248
Query: 1055 TKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYSSEVNSVLHIGPL 1234
TKASVGVAIS++PTGPF+YLYS+ PHGFDSRDMTV+KDDD VAYLIYSSE NSVLHIGPL
Sbjct: 249 TKASVGVAISDNPTGPFDYLYSRSPHGFDSRDMTVYKDDDNVAYLIYSSEDNSVLHIGPL 308
Query: 1235 TEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAPNEALAHAAESIMGPWE 1414
TE+YLDV PVMKR+MVGQHREAPAIFKHQN YYM+TS CTGWAPNEALAHAAESIMGPWE
Sbjct: 309 TENYLDVKPVMKRIMVGQHREAPAIFKHQNTYYMITSGCTGWAPNEALAHAAESIMGPWE 368
Query: 1415 KLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNPADLRDSRYVWLPLVIG 1594
LGNPC+GGN +FR TTFFAQST+VIPLPGVPG FIFMADRWNPADLRDSRY+WLPL++G
Sbjct: 369 TLGNPCVGGNSIFRSTTFFAQSTFVIPLPGVPGVFIFMADRWNPADLRDSRYLWLPLIVG 428
Query: 1595 GPADQPLEFNFGFPSWSRVSIYWHSKWRLP 1684
GPAD+PLE++FGFP WSRVS+YWH +WRLP
Sbjct: 429 GPADRPLEYSFGFPMWSRVSVYWHRQWRLP 458
>dbj|BAC06214.1| P0018C10.15 [Oryza sativa (japonica
cultivar-group)]|gi|22202681|dbj|BAC07339.1| P0471B04.23
[Oryza sativa (japonica cultivar-group)]
Length = 465
Score = 573 bits (1476), Expect = e-162
Identities = 274/462 (59%), Positives = 337/462 (72%), Gaps = 8/462 (1%)
Frame = +2
Query: 323 FAGGCRYSLLTIVWTVVGFFLVAHLISLYSRKD---NNIHQQVSS-----DQLQVVHHLA 478
F GCR SL IVW++VG L+ S+ + D N+I+ + S ++++ H
Sbjct: 15 FDAGCRSSLSFIVWSLVGVALIVCFFSVVRQADTRQNHIYFRHLSATRELEEIEEEHFRL 74
Query: 479 HPXXXXXXXXXXXXXXMXXXXXXXXXXXXXXXXXXXXLVEEFLDDKSPIRHLFFPGIKTA 658
P +++++LD+ S + LFFP ++A
Sbjct: 75 PPPHKVNPRAVKRRGPRKAPK----------------VIDQYLDESSAVHALFFPDERSA 118
Query: 659 AFGPTKDMGNETSYYFPGKIWMDTQGNPIQAHGGGILLDVKSNTYYWYGEYKDGPTYHAH 838
PTK GN++ Y++PG++W+DT G+ IQAHGGGIL D + YYWYGE KDG TY H
Sbjct: 119 V-NPTKG-GNDSMYFYPGRVWLDTDGHAIQAHGGGILYDHITAKYYWYGENKDGLTYQTH 176
Query: 839 KKGPARVDIIGVGCYSSKDLWTWKNEGIVLGAEETNKTHDLHKSNVLERPKVIYNEKTEK 1018
K RVDIIGV CYSSKDLW+W NEGIVL E TN THDLHKS VLERPKVIYN+ T +
Sbjct: 177 PKSTYRVDIIGVSCYSSKDLWSWTNEGIVLPGEPTNFTHDLHKSKVLERPKVIYNDHTGQ 236
Query: 1019 YVMWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSRDMTVFKDDDGVAYLIYS 1198
YVMWMHIDDANYTKASVGVA+SNSPTGPF YLYS RPHGF+SRDMT+FKDDDG AYL YS
Sbjct: 237 YVMWMHIDDANYTKASVGVAVSNSPTGPFTYLYSFRPHGFESRDMTIFKDDDGSAYLFYS 296
Query: 1199 SEVNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNIYYMVTSWCTGWAPNEAL 1378
S N+ LH+ PLT+DYL++T M+R+++ +HREAPA+FK Q YYM+TS C+GWAPN AL
Sbjct: 297 SRDNTELHVSPLTKDYLNITVAMRRILIRRHREAPAVFKLQGTYYMITSGCSGWAPNRAL 356
Query: 1379 AHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGVPGAFIFMADRWNPADLR 1558
AHAAESIMGPWE LGNPC+GGN+ FRLTTF +QST+V+PLPG+PG FIFMADRWNP++L+
Sbjct: 357 AHAAESIMGPWETLGNPCVGGNRFFRLTTFLSQSTFVLPLPGLPGTFIFMADRWNPSNLK 416
Query: 1559 DSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 1684
DSRYVWLPL IGG AD+PL+++FGFP+WSRVSIYWH KWRLP
Sbjct: 417 DSRYVWLPLFIGGLADEPLDYSFGFPAWSRVSIYWHRKWRLP 458
>emb|CAA10760.1| hypothetical protein [Arabidopsis thaliana]
Length = 239
Score = 510 bits (1313), Expect = e-143
Identities = 239/239 (100%), Positives = 239/239 (100%)
Frame = +2
Query: 968 SNVLERPKVIYNEKTEKYVMWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSR 1147
SNVLERPKVIYNEKTEKYVMWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSR
Sbjct: 1 SNVLERPKVIYNEKTEKYVMWMHIDDANYTKASVGVAISNSPTGPFEYLYSKRPHGFDSR 60
Query: 1148 DMTVFKDDDGVAYLIYSSEVNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNI 1327
DMTVFKDDDGVAYLIYSSEVNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNI
Sbjct: 61 DMTVFKDDDGVAYLIYSSEVNSVLHIGPLTEDYLDVTPVMKRVMVGQHREAPAIFKHQNI 120
Query: 1328 YYMVTSWCTGWAPNEALAHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGV 1507
YYMVTSWCTGWAPNEALAHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGV
Sbjct: 121 YYMVTSWCTGWAPNEALAHAAESIMGPWEKLGNPCIGGNKVFRLTTFFAQSTYVIPLPGV 180
Query: 1508 PGAFIFMADRWNPADLRDSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 1684
PGAFIFMADRWNPADLRDSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP
Sbjct: 181 PGAFIFMADRWNPADLRDSRYVWLPLVIGGPADQPLEFNFGFPSWSRVSIYWHSKWRLP 239
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 129
effective length of database: 256,451,607
effective search space used: 130020964749
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)