BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.17502.C1
(636 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201552.1| 60S ribosomal protein L26; protein id: At5... 254 8e-67
ref|NP_190560.1| 60S RIBOSOMAL PROTEIN - like; protein id: ... 220 1e-56
sp|Q39411|RL26_BRARA 60S ribosomal protein L26|gi|2160300|d... 200 1e-50
dbj|BAB21209.1| putative ribosomal protein L26 [Oryza sativ... 188 4e-47
gb|AAC64166.1| ribosomal protein L26 [Zea mays] 176 2e-43
>ref|NP_201552.1| 60S ribosomal protein L26; protein id: At5g67510.1, supported by
cDNA: 2561., supported by cDNA: gi_17473655, supported
by cDNA: gi_20148598 [Arabidopsis
thaliana]|gi|27734449|sp|Q9FJX2|R26B_ARATH 60S ribosomal
protein L26B|gi|9757872|dbj|BAB08459.1| 60S ribosomal
protein L26 [Arabidopsis
thaliana]|gi|17473656|gb|AAL38285.1| 60S ribosomal
protein L26 [Arabidopsis
thaliana]|gi|20148599|gb|AAM10190.1| 60S ribosomal
protein L26 [Arabidopsis
thaliana]|gi|21554514|gb|AAM63595.1| 60S ribosomal
protein L26 [Arabidopsis thaliana]
Length = 146
Score = 254 bits (648), Expect = 8e-67
Identities = 131/146 (89%), Positives = 131/146 (89%)
Frame = +3
Query: 39 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 218
MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG
Sbjct: 1 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60
Query: 219 TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITXXXXXXXXXXXXXX 398
TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMIT
Sbjct: 61 TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120
Query: 399 XANGRAAADKEKGTKFSAEDVMENVD 476
ANGRAAADKEKGTKFSAEDVMENVD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146
>ref|NP_190560.1| 60S RIBOSOMAL PROTEIN - like; protein id: At3g49910.1, supported by
cDNA: gi_16323425 [Arabidopsis
thaliana]|gi|27735242|sp|P51414|R26A_ARATH 60S ribosomal
protein L26A|gi|11276861|pir||T46057 60S RIBOSOMAL
PROTEIN-like - Arabidopsis
thaliana|gi|6723436|emb|CAB66929.1| 60S RIBOSOMAL
PROTEIN-like [Arabidopsis
thaliana]|gi|13877791|gb|AAK43973.1|AF370158_1 putative
60S ribosomal protein [Arabidopsis
thaliana]|gi|16323426|gb|AAL15207.1| putative 60S
ribosomal protein [Arabidopsis
thaliana]|gi|23397084|gb|AAN31827.1| putative 60S
ribosomal protein [Arabidopsis thaliana]
Length = 146
Score = 220 bits (560), Expect = 1e-56
Identities = 110/146 (75%), Positives = 123/146 (83%)
Frame = +3
Query: 39 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 218
MK+NPRV+SSRRKNRKAHFTA SS RRV+MSSPLS DLR K+NVRSMPIRKDDEVQ+VRG
Sbjct: 1 MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60
Query: 219 TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITXXXXXXXXXXXXXX 398
T+KGREGKV+QVYRRKWVIHIERITREKVNG+TVNVG+ S V+IT
Sbjct: 61 TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120
Query: 399 XANGRAAADKEKGTKFSAEDVMENVD 476
A GRAAADKEKGTKF++EDVM+NVD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146
>sp|Q39411|RL26_BRARA 60S ribosomal protein L26|gi|2160300|dbj|BAA18941.1| ribosomal
protein [Brassica rapa]
Length = 146
Score = 200 bits (509), Expect = 1e-50
Identities = 102/145 (70%), Positives = 116/145 (79%)
Frame = +3
Query: 39 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 218
MK+NPRV+SSRR+NRK HFTA SS RRV MSSPLS DLR K+NVRSMPIRKDDE Q+VRG
Sbjct: 1 MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60
Query: 219 TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITXXXXXXXXXXXXXX 398
T+KGREGK+ QVYRRK VIHIER+TREKVNG+TVNVGV + V+IT
Sbjct: 61 TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120
Query: 399 XANGRAAADKEKGTKFSAEDVMENV 473
A GRAAADK+KGTKF+A DVM+NV
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145
>dbj|BAB21209.1| putative ribosomal protein L26 [Oryza sativa (japonica
cultivar-group)]
Length = 157
Score = 188 bits (478), Expect = 4e-47
Identities = 99/141 (70%), Positives = 116/141 (82%)
Frame = +3
Query: 39 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 218
MK NPRV+SSRRK RKAHFTAPSSVRRVLMS+ LS +LR+K+NVRS+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 219 TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITXXXXXXXXXXXXXX 398
++KGREGKV+QVYRR+WVIH+ERITREKVNGSTVNVG++ S V++T
Sbjct: 61 SYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDR 120
Query: 399 XANGRAAADKEKGTKFSAEDV 461
A GR AADK KG KF+A+DV
Sbjct: 121 KARGR-AADKAKG-KFTADDV 139
>gb|AAC64166.1| ribosomal protein L26 [Zea mays]
Length = 121
Score = 176 bits (446), Expect = 2e-43
Identities = 86/106 (81%), Positives = 100/106 (94%)
Frame = +3
Query: 39 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 218
MK NPRV+SSRRK RKAHFTAPSSVRRVLMS+ LS +LR+K+NVRS+PIRKDDEVQVVRG
Sbjct: 1 MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAGLSTELRHKYNVRSIPIRKDDEVQVVRG 60
Query: 219 TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMIT 356
T+KGREGKV+QVYRR+WVIH+ERITREKVNGSTVNVG++ S V++T
Sbjct: 61 TYKGREGKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVIVT 106
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 25219843509
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)