BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.17501.C1
(1155 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201551.1| porin-like protein; protein id: At5g67500.... 514 e-145
ref|NP_190561.1| porin - like protein; protein id: At3g4992... 292 7e-78
pir||T12558 porin - common ice plant|gi|1724100|gb|AAB38498... 273 4e-72
sp|P42055|POR4_SOLTU 34 kDa outer mitochondrial membrane pr... 269 5e-71
sp|P42054|PORI_PEA Outer plastidial membrane protein porin ... 264 2e-69
>ref|NP_201551.1| porin-like protein; protein id: At5g67500.1, supported by cDNA:
12964. [Arabidopsis thaliana]|gi|9757871|dbj|BAB08458.1|
porin-like protein [Arabidopsis
thaliana]|gi|21537313|gb|AAM61654.1| porin-like protein
[Arabidopsis thaliana]
Length = 276
Score = 514 bits (1325), Expect = e-145
Identities = 263/276 (95%), Positives = 263/276 (95%)
Frame = +1
Query: 61 MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 240
MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY
Sbjct: 1 MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 60
Query: 241 KYKNALFDVKIXXXXXXXXXXXXXEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 420
KYKNALFDVKI EILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA
Sbjct: 61 KYKNALFDVKIDTDSSVLTTVTLTEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 120
Query: 421 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 600
AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD
Sbjct: 121 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 180
Query: 601 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 780
SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL
Sbjct: 181 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 240
Query: 781 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 888
LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP
Sbjct: 241 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 276
>ref|NP_190561.1| porin - like protein; protein id: At3g49920.1 [Arabidopsis
thaliana]|gi|11358629|pir||T46058 porin-like protein -
Arabidopsis thaliana|gi|6723437|emb|CAB66930.1|
porin-like protein [Arabidopsis thaliana]
Length = 226
Score = 292 bits (747), Expect = 7e-78
Identities = 159/276 (57%), Positives = 186/276 (66%)
Frame = +1
Query: 61 MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 240
MSKGPGLF DIGK AKDLLTRDY++DQKFSIST S SGVALTSTALK G +HAA+VATQY
Sbjct: 1 MSKGPGLFADIGKYAKDLLTRDYSTDQKFSISTNSVSGVALTSTALKNGVLHAANVATQY 60
Query: 241 KYKNALFDVKIXXXXXXXXXXXXXEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 420
KY+N FDVKI + P K ++ DH T+T
Sbjct: 61 KYRNTFFDVKIDTDFNVKSL-----VYPMNKFVSI-----------------DHNTLT-- 96
Query: 421 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 600
GYDTTS+TFTKYN G+SVTKPD C+SIILGDKGD
Sbjct: 97 --------------------------GYDTTSRTFTKYNVGVSVTKPDQCVSIILGDKGD 130
Query: 601 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 780
S+KASY+++ DE R+A VGEV RK STNE T+TVGGLYA+DH T VKAKLN++G GAL
Sbjct: 131 SIKASYVYYLDESTRSATVGEVIRKISTNETTVTVGGLYAVDHLTNVKAKLNSNGKFGAL 190
Query: 781 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 888
LQHE LP+S+VT+S EIDTK L+K+PR GLSL+LKP
Sbjct: 191 LQHEGLPKSIVTISGEIDTKTLDKYPRLGLSLSLKP 226
>pir||T12558 porin - common ice plant|gi|1724100|gb|AAB38498.1| porin
[Mesembryanthemum crystallinum]
Length = 276
Score = 273 bits (698), Expect = 4e-72
Identities = 136/276 (49%), Positives = 181/276 (65%)
Frame = +1
Query: 61 MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 240
M+KGPGL+TDIGKKA+DLL RDY +DQKFSI+TYS +GVA+TS+ KKG + ADV TQ
Sbjct: 1 MAKGPGLYTDIGKKARDLLYRDYQTDQKFSITTYSPTGVAITSSGTKKGDLFLADVNTQL 60
Query: 241 KYKNALFDVKIXXXXXXXXXXXXXEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 420
K KN D+K+ E P K I SF+VPD S KLE+QY HD+A + +
Sbjct: 61 KNKNVTTDIKVDTNSNLLTTITVDEAAPGLKTILSFRVPDQRSGKLELQYLHDYAGICTS 120
Query: 421 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 600
L NP+++ + LG+ +++FG + +D+ + FTK NAG+S D S+ L DKGD
Sbjct: 121 VGLTANPIVNFSGVLGTNLLAFGTDVSFDSKTGNFTKCNAGLSFANADLIASLTLNDKGD 180
Query: 601 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 780
+L ASY H +A EV FSTN+NTIT+G +AID T +K ++NN G AL
Sbjct: 181 TLNASYYHTISPLTSSAVGAEVAHSFSTNQNTITLGAQHAIDPLTNLKGRVNNFGKATAL 240
Query: 781 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 888
+QHE P+SLVT S+E+DTKA+EK + GL+LALKP
Sbjct: 241 IQHEWRPKSLVTFSAEVDTKAIEKSAKVGLALALKP 276
>sp|P42055|POR4_SOLTU 34 kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) (POM 34)|gi|629720|pir||S46936 34K porin -
potato|gi|1076682|pir||A55364 porin (clone pPOM-34) -
potato mitochondrion|gi|516166|emb|CAA56599.1| 34 kDA
porin [Solanum tuberosum]
Length = 276
Score = 269 bits (688), Expect = 5e-71
Identities = 136/276 (49%), Positives = 178/276 (64%)
Frame = +1
Query: 61 MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 240
M KGPGL+T+IGKKA+DLL +DY SD KFSI+TYS +GV +TS+ KKG + ADV TQ
Sbjct: 1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQL 60
Query: 241 KYKNALFDVKIXXXXXXXXXXXXXEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 420
K KN D+K+ E P K I SF+VPD S KLEVQY HD+A + +
Sbjct: 61 KNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTS 120
Query: 421 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 600
L NP+++ + +G+ +I+ G + +DT + FTK NAG+S T D S+ L +KGD
Sbjct: 121 VGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGD 180
Query: 601 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 780
+L ASY H TA EV FSTNEN ITVG + +D T+VKA++NN G AL
Sbjct: 181 NLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASAL 240
Query: 781 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 888
LQHE P+SL TVS E+DTK+++K +FGL+LALKP
Sbjct: 241 LQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276
>sp|P42054|PORI_PEA Outer plastidial membrane protein porin (Voltage-dependent
anion-selective channel protein)
(VDAC)|gi|480122|pir||S36454 porin por1 - garden
pea|gi|396819|emb|CAA80988.1| Porin [Pisum sativum]
Length = 276
Score = 264 bits (674), Expect = 2e-69
Identities = 130/276 (47%), Positives = 182/276 (65%)
Frame = +1
Query: 61 MSKGPGLFTDIGKKAKDLLTRDYNSDQKFSISTYSASGVALTSTALKKGGVHAADVATQY 240
M KGPGL+TDIGKKA+DLL +DY+SD+KF+ISTYS +GVA+TS+ KKG + DV TQ
Sbjct: 1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQL 60
Query: 241 KYKNALFDVKIXXXXXXXXXXXXXEILPSTKAIASFKVPDYNSAKLEVQYFHDHATVTAA 420
K KN D+K+ E P KAI SFKVP+ S K+E+QY H++A ++++
Sbjct: 61 KNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSS 120
Query: 421 AALKQNPLIDITATLGSPVISFGAEAGYDTTSKTFTKYNAGISVTKPDACLSIILGDKGD 600
LK NP+++ ++ +G+ ++FGA+ +DT TK NA ++ K D S+ L +KGD
Sbjct: 121 VGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGD 180
Query: 601 SLKASYLHHFDEFKRTAAVGEVYRKFSTNENTITVGGLYAIDHSTAVKAKLNNHGTLGAL 780
L ASY H + TA ++ +FST ENT T+G +A+D T VK ++ N G AL
Sbjct: 181 LLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASAL 240
Query: 781 LQHEVLPRSLVTVSSEIDTKALEKHPRFGLSLALKP 888
+QHE P+SL+T+SSE+DTKA+EK + GLSLALKP
Sbjct: 241 IQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 125
effective length of database: 261,807,791
effective search space used: 67808217869
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)