BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.17500.C1
         (596 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB08457.1|  gene_id:K9I9.5~unknown protein [Arabidopsis...   148   8e-67
ref|NP_569049.1|  expressed protein; protein id: At5g67490.1...   161   5e-39
gb|AAO22650.1|  unknown protein [Arabidopsis thaliana]            158   5e-38
ref|NP_740875.1|  Putative mitochondrial protein of ancient ...    63   2e-09
ref|NP_609170.1|  CG7224 gene product [Drosophila melanogast...    58   8e-08

>dbj|BAB08457.1| gene_id:K9I9.5~unknown protein [Arabidopsis thaliana]
          Length = 226

 Score =  148 bits (373), Expect(2) = 8e-67
 Identities = 79/106 (74%), Positives = 79/106 (74%)
 Frame = +1

Query: 55  MATNNIVRLIAPSRSVSSRFLEPVSRFLSSGTXXXXXXXXXXXXLNRDVKPDQNLQQNLQ 234
           MATNNIVRLIAPSRSVSSRFLEPVSRFLSSGT            LNRDVKPDQNLQQNLQ
Sbjct: 1   MATNNIVRLIAPSRSVSSRFLEPVSRFLSSGTPPPPQAPSPNQDLNRDVKPDQNLQQNLQ 60

Query: 235 MQKXXXXXXXXXXXXXFVNEDTGEIGGPRGPEPTRYGDWEQRGRCS 372
           MQK             FVNEDTGEIGGPRGPEPTRYGDWEQR  CS
Sbjct: 61  MQKEEEEEGEGGGGGEFVNEDTGEIGGPRGPEPTRYGDWEQRA-CS 105




 Score =  127 bits (320), Expect(2) = 8e-67
 Identities = 61/62 (98%), Positives = 62/62 (99%)
 Frame = +3

Query: 408 ACSYIFLGKMEINSFYVFMYLQNNGENGRKCSRTSNSLPLFGSSFSGDLVIPVIVNKFFL 587
           ACSYIFLGKMEINSFYVFMYLQNNGENGRKCSRTSNSLPLFGSSFSGDLVIPVIVNKFFL
Sbjct: 103 ACSYIFLGKMEINSFYVFMYLQNNGENGRKCSRTSNSLPLFGSSFSGDLVIPVIVNKFFL 162

Query: 588 RW 593
           R+
Sbjct: 163 RF 164



>ref|NP_569049.1| expressed protein; protein id: At5g67490.1, supported by cDNA:
           2518. [Arabidopsis thaliana]|gi|21554347|gb|AAM63454.1|
           unknown [Arabidopsis thaliana]
          Length = 108

 Score =  161 bits (408), Expect = 5e-39
 Identities = 83/108 (76%), Positives = 83/108 (76%)
 Frame = +1

Query: 55  MATNNIVRLIAPSRSVSSRFLEPVSRFLSSGTXXXXXXXXXXXXLNRDVKPDQNLQQNLQ 234
           MATNNIVRLIAPSRSVSSRFLEPVSRFLSSGT            LNRDVKPDQNLQQNLQ
Sbjct: 1   MATNNIVRLIAPSRSVSSRFLEPVSRFLSSGTPPPPQAPSPNQDLNRDVKPDQNLQQNLQ 60

Query: 235 MQKXXXXXXXXXXXXXFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 378
           MQK             FVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF
Sbjct: 61  MQKEEEEEGEGGGGGEFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 108



>gb|AAO22650.1| unknown protein [Arabidopsis thaliana]
          Length = 108

 Score =  158 bits (399), Expect = 5e-38
 Identities = 82/108 (75%), Positives = 82/108 (75%)
 Frame = +1

Query: 55  MATNNIVRLIAPSRSVSSRFLEPVSRFLSSGTXXXXXXXXXXXXLNRDVKPDQNLQQNLQ 234
           MATNNIVRLIAPSRSVSSRFLEPVSRFLSSGT            LNRDVK DQNLQQNLQ
Sbjct: 1   MATNNIVRLIAPSRSVSSRFLEPVSRFLSSGTPPPPQDPSPNQDLNRDVKQDQNLQQNLQ 60

Query: 235 MQKXXXXXXXXXXXXXFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 378
           MQK             FVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF
Sbjct: 61  MQKEEEEEGEGGGGGEFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 108



>ref|NP_740875.1| Putative mitochondrial protein of ancient origin (10.0 kD)
           [Caenorhabditis
           elegans]|gi|21328382|gb|AAM48550.1|AF003141_5
           Hypothetical protein W02D3.12 [Caenorhabditis elegans]
          Length = 89

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 11/72 (15%)
 Frame = +1

Query: 196 DVKPDQNLQQNLQMQKXXXXXXXXXXXXXF-----------VNEDTGEIGGPRGPEPTRY 342
           D+KP Q+ ++ +  +K             +           VN+ TGE+GGP GPEPTRY
Sbjct: 18  DIKPKQSAKEKVMAEKTPKGALDKADEQQYEDPHLKKHPGGVNKSTGEVGGPAGPEPTRY 77

Query: 343 GDWEQRGRCSDF 378
           GDWE++GR SDF
Sbjct: 78  GDWERKGRVSDF 89



>ref|NP_609170.1| CG7224 gene product [Drosophila
           melanogaster]|gi|10728653|gb|AAF52586.2| CG7224-PA
           [Drosophila melanogaster]
          Length = 118

 Score = 58.2 bits (139), Expect = 8e-08
 Identities = 24/30 (80%), Positives = 26/30 (86%)
 Frame = +1

Query: 289 NEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 378
           N  TGEIGGP GPEPTRYGDWE++GR SDF
Sbjct: 89  NPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 117
effective length of database: 272,520,159
effective search space used: 22074132879
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)