BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.16514.C1
         (1078 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_200238.1|  light-harvesting chlorophyll a/b binding p...   546   e-154
gb|AAD27877.1|AF139465_1  LHCII type III chlorophyll a/b bin...   494   e-139
pir||S33775  chlorophyll a/b-binding protein - garden pea|gi...   490   e-137
gb|AAF20948.1|AF207690_1  chlorophyll a/b-binding protein [D...   489   e-137
sp|P27489|CB23_LYCES  Chlorophyll A-B binding protein 13, ch...   483   e-135
>ref|NP_200238.1| light-harvesting chlorophyll a/b binding protein, putative; protein
           id: At5g54270.1, supported by cDNA: gi_13605753,
           supported by cDNA: gi_13926338, supported by cDNA:
           gi_16323261, supported by cDNA: gi_4741951, supported by
           cDNA: gi_5002209 [Arabidopsis
           thaliana]|gi|25299027|pir||T52318 chlorophyll
           a/b-binding protein type III [imported] - Arabidopsis
           thaliana|gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3
           protein [Arabidopsis
           thaliana]|gi|5002210|gb|AAD37362.1|AF143691_1 type III
           chlorophyll a/b binding protein [Arabidopsis
           thaliana]|gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll
           a/b binding protein [Arabidopsis
           thaliana]|gi|13605754|gb|AAK32870.1|AF361858_1
           AT5g54270/MDK4_9 [Arabidopsis
           thaliana]|gi|13926339|gb|AAK49633.1|AF372917_1
           AT5g54270/MDK4_9 [Arabidopsis
           thaliana]|gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9
           [Arabidopsis thaliana]
          Length = 265

 Score =  546 bits (1408), Expect = e-154
 Identities = 265/265 (100%), Positives = 265/265 (100%)
 Frame = +3

Query: 96  MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 275
           MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS
Sbjct: 1   MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60

Query: 276 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 455
           VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV
Sbjct: 61  VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120

Query: 456 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 635
           RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180

Query: 636 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 815
           VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 816 NLLDHLDNPVANNAWAFATKFAPGA 890
           NLLDHLDNPVANNAWAFATKFAPGA
Sbjct: 241 NLLDHLDNPVANNAWAFATKFAPGA 265
>gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
          Length = 269

 Score =  494 bits (1273), Expect = e-139
 Identities = 235/266 (88%), Positives = 250/266 (93%)
 Frame = +3

Query: 93  TMASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPF 272
           T+ +  + S +VL PT FLGQ KAS+ NPLRDVVS+GS KY+M N+LWYGPDRVKYLGPF
Sbjct: 4   TLMAATSGSGTVLKPTPFLGQGKASNGNPLRDVVSMGSGKYSMSNELWYGPDRVKYLGPF 63

Query: 273 SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 452
           S QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL+KW
Sbjct: 64  SAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 123

Query: 453 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 632
           +RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLD
Sbjct: 124 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 183

Query: 633 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 812
           GVGEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 184 GVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243

Query: 813 ENLLDHLDNPVANNAWAFATKFAPGA 890
           ENLLDHLDNPVANNAW +ATKFAPG+
Sbjct: 244 ENLLDHLDNPVANNAWVYATKFAPGS 269
>pir||S33775 chlorophyll a/b-binding protein - garden
           pea|gi|20671|emb|CAA49149.1| chlorophyll a/b-binding
           protein [Pisum sativum]
          Length = 265

 Score =  490 bits (1261), Expect = e-137
 Identities = 237/265 (89%), Positives = 250/265 (93%)
 Frame = +3

Query: 96  MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 275
           MA+T  SS++V+  T FLGQ K++  NPLRDVV++G+ K+TMGNDLWYGPDRVKYLGPFS
Sbjct: 4   MAAT-ASSATVVKQTPFLGQRKSA--NPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGPFS 60

Query: 276 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 455
            QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLQKWV
Sbjct: 61  AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120

Query: 456 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 635
           RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ++LMGLVEGFRINGL  
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPD 180

Query: 636 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 815
           VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 816 NLLDHLDNPVANNAWAFATKFAPGA 890
           NLLDHLDNPVANNAW +ATKF PGA
Sbjct: 241 NLLDHLDNPVANNAWVYATKFVPGA 265
>gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
          Length = 264

 Score =  489 bits (1260), Expect = e-137
 Identities = 233/259 (89%), Positives = 246/259 (94%)
 Frame = +3

Query: 114 SSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSY 293
           SSS+V+  T FLG TKA++ NPLRDVVS+G  K+TMG+DLWYGPDRVKYLGPFS QTPSY
Sbjct: 6   SSSTVVRATPFLGLTKATNANPLRDVVSMGPGKFTMGSDLWYGPDRVKYLGPFSAQTPSY 65

Query: 294 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKE 473
           LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+KWV+VDFKE
Sbjct: 66  LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKE 125

Query: 474 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGND 653
           PVWFKAGSQIF+EGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGL GVGEGND
Sbjct: 126 PVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVESFRINGLPGVGEGND 185

Query: 654 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 833
           LYPGGQYFDPLGLADDPVT AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL
Sbjct: 186 LYPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 245

Query: 834 DNPVANNAWAFATKFAPGA 890
           DNPVANNAW +ATKF PG+
Sbjct: 246 DNPVANNAWVYATKFVPGS 264
>sp|P27489|CB23_LYCES Chlorophyll A-B binding protein 13, chloroplast precursor (LHCII
           type III CAB-13)|gi|72748|pir||CDTO33 chlorophyll
           a/b-binding protein type III precursor (cab-13) -
           tomato|gi|19277|emb|CAA42818.1| LHCII type III
           [Lycopersicon esculentum]
          Length = 265

 Score =  483 bits (1242), Expect = e-135
 Identities = 233/266 (87%), Positives = 248/266 (92%)
 Frame = +3

Query: 93  TMASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPF 272
           +MA+T  SS++V+  T FLGQTK +  NPLRDVV++GS ++TM NDLWYGPDRVKYLGPF
Sbjct: 3   SMAAT-ASSTTVVKATPFLGQTKNA--NPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPF 59

Query: 273 SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 452
           S QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCI PEVL+KW
Sbjct: 60  SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKW 119

Query: 453 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 632
           V+VDFKEPVWFKAGSQIFS+GGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL 
Sbjct: 120 VKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 179

Query: 633 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 812
           GVGEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 180 GVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239

Query: 813 ENLLDHLDNPVANNAWAFATKFAPGA 890
           ENLLDHLDNPVANNAW +ATKF PGA
Sbjct: 240 ENLLDHLDNPVANNAWVYATKFVPGA 265
  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 124
effective length of database: 263,146,837
effective search space used: 61576359858
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results