BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.16514.C1
(1078 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200238.1| light-harvesting chlorophyll a/b binding p... 546 e-154
gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b bin... 494 e-139
pir||S33775 chlorophyll a/b-binding protein - garden pea|gi... 490 e-137
gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [D... 489 e-137
sp|P27489|CB23_LYCES Chlorophyll A-B binding protein 13, ch... 483 e-135
>ref|NP_200238.1| light-harvesting chlorophyll a/b binding protein, putative; protein
id: At5g54270.1, supported by cDNA: gi_13605753,
supported by cDNA: gi_13926338, supported by cDNA:
gi_16323261, supported by cDNA: gi_4741951, supported by
cDNA: gi_5002209 [Arabidopsis
thaliana]|gi|25299027|pir||T52318 chlorophyll
a/b-binding protein type III [imported] - Arabidopsis
thaliana|gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3
protein [Arabidopsis
thaliana]|gi|5002210|gb|AAD37362.1|AF143691_1 type III
chlorophyll a/b binding protein [Arabidopsis
thaliana]|gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll
a/b binding protein [Arabidopsis
thaliana]|gi|13605754|gb|AAK32870.1|AF361858_1
AT5g54270/MDK4_9 [Arabidopsis
thaliana]|gi|13926339|gb|AAK49633.1|AF372917_1
AT5g54270/MDK4_9 [Arabidopsis
thaliana]|gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9
[Arabidopsis thaliana]
Length = 265
Score = 546 bits (1408), Expect = e-154
Identities = 265/265 (100%), Positives = 265/265 (100%)
Frame = +3
Query: 96 MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 275
MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS
Sbjct: 1 MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 60
Query: 276 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 455
VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV
Sbjct: 61 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 120
Query: 456 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 635
RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 180
Query: 636 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 815
VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 816 NLLDHLDNPVANNAWAFATKFAPGA 890
NLLDHLDNPVANNAWAFATKFAPGA
Sbjct: 241 NLLDHLDNPVANNAWAFATKFAPGA 265
>gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 494 bits (1273), Expect = e-139
Identities = 235/266 (88%), Positives = 250/266 (93%)
Frame = +3
Query: 93 TMASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPF 272
T+ + + S +VL PT FLGQ KAS+ NPLRDVVS+GS KY+M N+LWYGPDRVKYLGPF
Sbjct: 4 TLMAATSGSGTVLKPTPFLGQGKASNGNPLRDVVSMGSGKYSMSNELWYGPDRVKYLGPF 63
Query: 273 SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 452
S QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVL+KW
Sbjct: 64 SAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKW 123
Query: 453 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 632
+RVDFKEPVWFKAG+QIFSEGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGLD
Sbjct: 124 LRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLD 183
Query: 633 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 812
GVGEGN+LYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 184 GVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 243
Query: 813 ENLLDHLDNPVANNAWAFATKFAPGA 890
ENLLDHLDNPVANNAW +ATKFAPG+
Sbjct: 244 ENLLDHLDNPVANNAWVYATKFAPGS 269
>pir||S33775 chlorophyll a/b-binding protein - garden
pea|gi|20671|emb|CAA49149.1| chlorophyll a/b-binding
protein [Pisum sativum]
Length = 265
Score = 490 bits (1261), Expect = e-137
Identities = 237/265 (89%), Positives = 250/265 (93%)
Frame = +3
Query: 96 MASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFS 275
MA+T SS++V+ T FLGQ K++ NPLRDVV++G+ K+TMGNDLWYGPDRVKYLGPFS
Sbjct: 4 MAAT-ASSATVVKQTPFLGQRKSA--NPLRDVVAMGTSKFTMGNDLWYGPDRVKYLGPFS 60
Query: 276 VQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWV 455
QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCITPEVLQKWV
Sbjct: 61 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120
Query: 456 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDG 635
RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ++LMGLVEGFRINGL
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGLPD 180
Query: 636 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 815
VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 VGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240
Query: 816 NLLDHLDNPVANNAWAFATKFAPGA 890
NLLDHLDNPVANNAW +ATKF PGA
Sbjct: 241 NLLDHLDNPVANNAWVYATKFVPGA 265
>gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 489 bits (1260), Expect = e-137
Identities = 233/259 (89%), Positives = 246/259 (94%)
Frame = +3
Query: 114 SSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPFSVQTPSY 293
SSS+V+ T FLG TKA++ NPLRDVVS+G K+TMG+DLWYGPDRVKYLGPFS QTPSY
Sbjct: 6 SSSTVVRATPFLGLTKATNANPLRDVVSMGPGKFTMGSDLWYGPDRVKYLGPFSAQTPSY 65
Query: 294 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRVDFKE 473
LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVL+KWV+VDFKE
Sbjct: 66 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKVDFKE 125
Query: 474 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLDGVGEGND 653
PVWFKAGSQIF+EGGLDYLGNPNLVHAQSILAVLGFQV+LMGLVE FRINGL GVGEGND
Sbjct: 126 PVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVESFRINGLPGVGEGND 185
Query: 654 LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 833
LYPGGQYFDPLGLADDPVT AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL
Sbjct: 186 LYPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHL 245
Query: 834 DNPVANNAWAFATKFAPGA 890
DNPVANNAW +ATKF PG+
Sbjct: 246 DNPVANNAWVYATKFVPGS 264
>sp|P27489|CB23_LYCES Chlorophyll A-B binding protein 13, chloroplast precursor (LHCII
type III CAB-13)|gi|72748|pir||CDTO33 chlorophyll
a/b-binding protein type III precursor (cab-13) -
tomato|gi|19277|emb|CAA42818.1| LHCII type III
[Lycopersicon esculentum]
Length = 265
Score = 483 bits (1242), Expect = e-135
Identities = 233/266 (87%), Positives = 248/266 (92%)
Frame = +3
Query: 93 TMASTFTSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDLWYGPDRVKYLGPF 272
+MA+T SS++V+ T FLGQTK + NPLRDVV++GS ++TM NDLWYGPDRVKYLGPF
Sbjct: 3 SMAAT-ASSTTVVKATPFLGQTKNA--NPLRDVVAMGSARFTMSNDLWYGPDRVKYLGPF 59
Query: 273 SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 452
S QTPSYL GEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGA GCI PEVL+KW
Sbjct: 60 SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKW 119
Query: 453 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 632
V+VDFKEPVWFKAGSQIFS+GGLDYLGNPNLVHAQSILAVLGFQV+LMGLVEGFRINGL
Sbjct: 120 VKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLP 179
Query: 633 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 812
GVGEGNDLYPGGQYFDPLGLADDP TFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 180 GVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 813 ENLLDHLDNPVANNAWAFATKFAPGA 890
ENLLDHLDNPVANNAW +ATKF PGA
Sbjct: 240 ENLLDHLDNPVANNAWVYATKFVPGA 265
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 124
effective length of database: 263,146,837
effective search space used: 61576359858
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)