BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.15123.C1
(10,045 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568451.1| VPS13 - like protein; protein id: At5g2474... 5757 0.0
pir||T17414 TipC protein - slime mold (Dictyostelium discoi... 105 5e-30
ref|NP_013060.1| vacuolar Protein Sorting; Vps13p [Saccharo... 85 1e-16
sp|P87319|YOS1_SCHPO Hypothetical protein C21C3.01c in chro... 88 3e-15
pir||T50345 vacuolar protein sorting-associated protein yea... 88 3e-15
>ref|NP_568451.1| VPS13 - like protein; protein id: At5g24740.1 [Arabidopsis
thaliana]|gi|10129653|emb|CAC08248.1| VPS13-like protein
[Arabidopsis thaliana]
Length = 3306
Score = 5757 bits (14936), Expect = 0.0
Identities = 2892/2984 (96%), Positives = 2894/2984 (96%)
Frame = +1
Query: 1 MLEGYVQGFVNLLLGYLGRYIKDIQKDQLKISLWNGXXXXXXXXXXPEAFEYLQLPIALK 180
MLEGYVQGFVNLLLGYLGRYIKDIQKDQLKISLWNG PEAFEYLQLPIALK
Sbjct: 1 MLEGYVQGFVNLLLGYLGRYIKDIQKDQLKISLWNGEVLLENVELNPEAFEYLQLPIALK 60
Query: 181 QGRVGKLSIKIPWKKLHRDPVTIMIEDVFICASQRNDQEWSSDVVEKREFAGXXXXXXXX 360
QGRVGKLSIKIPWKKLHRDPVTIMIEDVFICASQRNDQEWSSDVVEKREFAG
Sbjct: 61 QGRVGKLSIKIPWKKLHRDPVTIMIEDVFICASQRNDQEWSSDVVEKREFAGKKAKLASA 120
Query: 361 XXXXXXRRVFDNPGGNSYMSYITAKVNRSGELYDDLPQYSISAELTDVVVTLNEFXXXXX 540
RRVFDNPGGNSYMSYITAKVNRSGELYDDLPQYSISAELTDVVVTLNEF
Sbjct: 121 ELAKLSRRVFDNPGGNSYMSYITAKVNRSGELYDDLPQYSISAELTDVVVTLNEFQLQQI 180
Query: 541 XXXXXXXXTSQLRERYGRYRPCSTSLSRKPPGWQKLWWHYAQNSVLSDSIDKSIRLGLEE 720
TSQLRERYGRYRPCSTSLSRKPPGWQKLWWHYAQNSVLSDSIDKSIRLGLEE
Sbjct: 181 LILLDYLQTSQLRERYGRYRPCSTSLSRKPPGWQKLWWHYAQNSVLSDSIDKSIRLGLEE 240
Query: 721 LEKKSDIDDILSYRSAAEGEMQEACSELTVNMGATGATRSEKEQSAPEKEPSDDPTLNKS 900
LEKKSDIDDILSYRSAAEGEMQEACSELTVNMGATGATRSEKEQSAPEKEPSDDPTLNKS
Sbjct: 241 LEKKSDIDDILSYRSAAEGEMQEACSELTVNMGATGATRSEKEQSAPEKEPSDDPTLNKS 300
Query: 901 RGWLNWLSRGMLGAGGTEDSSQFSGVVSDEVVKDIHKATKFYPLSSSPRNTSATGKICTC 1080
RGWLNWLSRGMLGAGGTEDSSQFSGVVSDEVVKDIHKATKFYPLSSSPRNTSATGKICTC
Sbjct: 301 RGWLNWLSRGMLGAGGTEDSSQFSGVVSDEVVKDIHKATKFYPLSSSPRNTSATGKICTC 360
Query: 1081 SIRLNVRKFSATLQHISGSSSQVITELDILGVIVECKSWKDSTAMILSVISGRLVYPHNG 1260
SIRLNVRKFSATLQHISGSSSQVITELDILGVIVECKSWKDSTAMILSVISGRLVYPHNG
Sbjct: 361 SIRLNVRKFSATLQHISGSSSQVITELDILGVIVECKSWKDSTAMILSVISGRLVYPHNG 420
Query: 1261 KEILTMKRVCSQSDTLETKPSYGARLELSKDHDVALSLKATLQPLEAAYDGGFILAVSNF 1440
KEILTMKRVCSQSDTLETKPSYGARLELSKDHDVALSLKATLQPLEAAYDGGFILAVSNF
Sbjct: 421 KEILTMKRVCSQSDTLETKPSYGARLELSKDHDVALSLKATLQPLEAAYDGGFILAVSNF 480
Query: 1441 FSGSRYFKLQHERILSSLNGLESETRLAAKAEYLLSSRNKVKWDLDIKDLTLSFPGRLVE 1620
FSGSRYFKLQHERILSSLNGLESETRLAAKAEYLLSSRNKVKWDLDIKDLTLSFPGRLVE
Sbjct: 481 FSGSRYFKLQHERILSSLNGLESETRLAAKAEYLLSSRNKVKWDLDIKDLTLSFPGRLVE 540
Query: 1621 SESYNLVLVLESLSITSSSTDALSQIPRLQSDVDHVVNSLQSSVEALDAFQVKDLYDHFD 1800
SESYNLVLVLESLSITSSSTDALSQIPRLQSDVDHVVNSLQSSVEALDAFQVKDLYDHFD
Sbjct: 541 SESYNLVLVLESLSITSSSTDALSQIPRLQSDVDHVVNSLQSSVEALDAFQVKDLYDHFD 600
Query: 1801 IKICNLEMKLMKIHPFQELPLVEKSSLLIKFASCIIPEESILKQLEVEATLPMFNVHFSP 1980
IKICNLEMKLMKIHPFQELPLVEKSSLLIKFASCIIPEESILKQLEVEATLPMFNVHFSP
Sbjct: 601 IKICNLEMKLMKIHPFQELPLVEKSSLLIKFASCIIPEESILKQLEVEATLPMFNVHFSP 660
Query: 1981 SIFKGVMSVIEYLDIQDHGTRNPPPSPAPIFHFTIKTDLAFLRLHVNLENKGENSTVLVL 2160
SIFKGVMSVIEYLDIQDHGTRNPPPSPAPIFHFTIKTDLAFLRLHVNLENKGENSTVLVL
Sbjct: 661 SIFKGVMSVIEYLDIQDHGTRNPPPSPAPIFHFTIKTDLAFLRLHVNLENKGENSTVLVL 720
Query: 2161 SIQQLDLWYSRAIFEEWSVRAKTLEITACSSKDAADSHILCSSGNLLKSSSHGHGMDAHT 2340
SIQQLDLWYSRAIFEEWSVRAKTLEITACSSKDAADSHILCSSGNLLKSSSHGHGMDAHT
Sbjct: 721 SIQQLDLWYSRAIFEEWSVRAKTLEITACSSKDAADSHILCSSGNLLKSSSHGHGMDAHT 780
Query: 2341 SDETNIIDYRTTPEAAISLNCKVSQTSYKISSSYTNPSSLATDTIAPTEIPQFDFERFGF 2520
SDETNIIDYRTTPEAAISLNCKVSQTSYKISSSYTNPSSLATDTIAPTEIPQFDFERFGF
Sbjct: 781 SDETNIIDYRTTPEAAISLNCKVSQTSYKISSSYTNPSSLATDTIAPTEIPQFDFERFGF 840
Query: 2521 SNFTESRSCGCIPLDKFPFVTINNSGSLHSLESSLCYSTSDWRKLFILKNRKDGAQIGLN 2700
SNFTESRSCGCIPLDKFPFVTINNSGSLHSLESSLCYSTSDWRKLFILKNRKDGAQIGLN
Sbjct: 841 SNFTESRSCGCIPLDKFPFVTINNSGSLHSLESSLCYSTSDWRKLFILKNRKDGAQIGLN 900
Query: 2701 CECNSCTFQLKRDCPLNGLASSRDLGQTNHFTVDMHVFNTNVHFHDSSSVFGTIILPVSR 2880
CECNSCTFQLKRDCPLNGLASSRDLGQTNHFTVDMHVFNTNVHFHDSSSVFGTIILPVSR
Sbjct: 901 CECNSCTFQLKRDCPLNGLASSRDLGQTNHFTVDMHVFNTNVHFHDSSSVFGTIILPVSR 960
Query: 2881 YFLNISDDLLDLVASAEDLMLVSSLFTNYSGGFLWKQSSTDVSQVLNLRVRKRGLEPSGS 3060
YFLNISDDLLDLVASAEDLMLVSSLFTNYSGGFLWKQSSTDVSQVLNLRVRKRGLEPSGS
Sbjct: 961 YFLNISDDLLDLVASAEDLMLVSSLFTNYSGGFLWKQSSTDVSQVLNLRVRKRGLEPSGS 1020
Query: 3061 QLEVSIGIQHTYCILPPEYLAIIIGYFSLSDWTSKSGLQSLPQATELTKAHSEFAISYKI 3240
QLEVSIGIQHTYCILPPEYLAIIIGYFSLSDWTSKSGLQSLPQATELTKAHSEFAISYKI
Sbjct: 1021 QLEVSIGIQHTYCILPPEYLAIIIGYFSLSDWTSKSGLQSLPQATELTKAHSEFAISYKI 1080
Query: 3241 EILDSSIVLPVEGDDRRQLKVDIQQLYISFIPECALSNVVQHIPQECVIPLNQVLGRADC 3420
EILDSSIVLPVEGDDRRQLKVDIQQLYISFIPECALSNVVQHIPQECVIPLNQVLGRADC
Sbjct: 1081 EILDSSIVLPVEGDDRRQLKVDIQQLYISFIPECALSNVVQHIPQECVIPLNQVLGRADC 1140
Query: 3421 LNIFGRDXXXXXXXXXXDISTFKKNAVCRSITLAASIIADTWIRFPCDHNPLTELACVMS 3600
LNIFGRD DISTFKKNAVCRSITLAASIIADTWIRFPCDHNPLTELACVMS
Sbjct: 1141 LNIFGRDLSVSLLLSESDISTFKKNAVCRSITLAASIIADTWIRFPCDHNPLTELACVMS 1200
Query: 3601 RVDVCEIVVDDALDGFKAFLDVVDQLSLVDEESKLFVSDVPQFLHTKMRLKQELSVAPLE 3780
RVDVCEIVVDDALDGFKAFLDVVDQLSLVDEESKLFVSDVPQFLHTKMRLKQELSVAPLE
Sbjct: 1201 RVDVCEIVVDDALDGFKAFLDVVDQLSLVDEESKLFVSDVPQFLHTKMRLKQELSVAPLE 1260
Query: 3781 PSTSFIKFRIFVNLLTSKLHRLRKAPGTLLSEPVLQADMKFVCSGELKNNFPMSLDVQFF 3960
PSTSFIKFRIFVNLLTSKLHRLRKAPGTLLSEPVLQADMKFVCSGELKNNFPMSLDVQFF
Sbjct: 1261 PSTSFIKFRIFVNLLTSKLHRLRKAPGTLLSEPVLQADMKFVCSGELKNNFPMSLDVQFF 1320
Query: 3961 KIGLYSLLSSVMLARCINADGDPSALRVRFTEQAENEYDLCFSLPSLDIWLHFFDWIEVI 4140
KIGLYSLLSSVMLARCINADGDPSALRVRFTEQAENEYDLCFSLPSLDIWLHFFDWIEVI
Sbjct: 1321 KIGLYSLLSSVMLARCINADGDPSALRVRFTEQAENEYDLCFSLPSLDIWLHFFDWIEVI 1380
Query: 4141 ELLKSYSQKLEDSSEDRFFSKGSKLDMDESIGVVRTICDNTDRVLNVLQTEVSENSSEVM 4320
ELLKSYSQKLEDSSEDRFFSKGSKLDMDESIGVVRTICDNTDRVLNVLQTEVSENSSEVM
Sbjct: 1381 ELLKSYSQKLEDSSEDRFFSKGSKLDMDESIGVVRTICDNTDRVLNVLQTEVSENSSEVM 1440
Query: 4321 SFAARSENIGVKIHIPLCTSHTEFPGFMATDVHEISEEEHTNCFKGNYCKYVSVTACSRS 4500
SFAARSENIGVKIHIPLCTSHTEFPGFMATDVHEISEEEHTNCFKGNYCKYVSVTACSRS
Sbjct: 1441 SFAARSENIGVKIHIPLCTSHTEFPGFMATDVHEISEEEHTNCFKGNYCKYVSVTACSRS 1500
Query: 4501 GELSILGRDVKLSYKIEKLNGILAISGVDTVRSCSLFGAAQLLVETSIQMDQNKIMSIDV 4680
GELSILGRDVKLSYKIEKLNGILAISGVDTVRSCSLFGAAQLLVETSIQMDQNKIMSIDV
Sbjct: 1501 GELSILGRDVKLSYKIEKLNGILAISGVDTVRSCSLFGAAQLLVETSIQMDQNKIMSIDV 1560
Query: 4681 GILSDKVEMHASHQVLSFWHGITFDAPETPSSQNSEGNMSIKVQIRDVSLLISDGKWGCS 4860
GILSDKVEMHASHQVLSFWHGITFDAPETPSSQNSEGNMSIKVQIRDVSLLISDGKWGCS
Sbjct: 1561 GILSDKVEMHASHQVLSFWHGITFDAPETPSSQNSEGNMSIKVQIRDVSLLISDGKWGCS 1620
Query: 4861 GMLLEVLMRNFLLQANLAEKNMESLVSCDLEVNYNNMHKVLWEPFIEPWNFDIKLSRKFD 5040
GMLLEVLMRNFLLQANLAEKNMESLVSCDLEVNYNNMHKVLWEPFIEPWNFDIKLSRKFD
Sbjct: 1621 GMLLEVLMRNFLLQANLAEKNMESLVSCDLEVNYNNMHKVLWEPFIEPWNFDIKLSRKFD 1680
Query: 5041 ANSLLNNAGLTEVIVASSNQLNLNLTESLFECIFRIIEMLNILELMETDAIPDNKGLSVY 5220
ANSLLNNAGLTEVIVASSNQLNLNLTESLFECIFRIIEMLNILELMETDAIPDNKGLSVY
Sbjct: 1681 ANSLLNNAGLTEVIVASSNQLNLNLTESLFECIFRIIEMLNILELMETDAIPDNKGLSVY 1740
Query: 5221 CTNSTRTERYSPYVLQNLTSLPLGYQVFQGHDSDVLNISAPVAQNFVQPGCSVPIYIDNS 5400
CTNSTRTERYSPYVLQNLTSLPLGYQVFQGHDSDVLNISAPVAQNFVQPGCSVPIYIDNS
Sbjct: 1741 CTNSTRTERYSPYVLQNLTSLPLGYQVFQGHDSDVLNISAPVAQNFVQPGCSVPIYIDNS 1800
Query: 5401 DTLLIPDRRRSQFGCSSSESGDAIHHYMKVQLDGTSFASPPHSMDRIGLSYFEVDFSKTS 5580
DTLLIPDRRRSQFGCSSSESGDAIHHYMKVQLDGTSFASPPHSMDRIGLSYFEVDFSKTS
Sbjct: 1801 DTLLIPDRRRSQFGCSSSESGDAIHHYMKVQLDGTSFASPPHSMDRIGLSYFEVDFSKTS 1860
Query: 5581 NSSDNVEKASKSGYGSSFVVPVVYEVSLQQQSKLIRVYSTVIILNSTSMPLELRFDIPFG 5760
NSSDNVEKASKSGYGSSFVVPVVYEVSLQQQSKLIRVYSTVIILNSTSMPLELRFDIPFG
Sbjct: 1861 NSSDNVEKASKSGYGSSFVVPVVYEVSLQQQSKLIRVYSTVIILNSTSMPLELRFDIPFG 1920
Query: 5761 ISPKLPYLVDLNTIFYYSYAILFQILDPIFPGQEFPLPLHLAKSGRLRWRPLGDSYLWSE 5940
ISPKLPYLVDLNTIFYYSYAILFQILDPIFPGQEFPLPLHLAKSGRLRWRPLGDSYLWSE
Sbjct: 1921 ISPKLPYLVDLNTIFYYSYAILFQILDPIFPGQEFPLPLHLAKSGRLRWRPLGDSYLWSE 1980
Query: 5941 AHSISKVLSQDSGIGFRRSFACYPCHPSHEPFRCCISVQSTSLPASFHINDLSAGNFGQQ 6120
AHSISKVLSQDSGIGFRRSFACYPCHPSHEPFRCCISVQSTSLPASFHINDLSAGNFGQQ
Sbjct: 1981 AHSISKVLSQDSGIGFRRSFACYPCHPSHEPFRCCISVQSTSLPASFHINDLSAGNFGQQ 2040
Query: 6121 LHNLDQSREQFIHQVTLSTPFVVSNCLPDPISLSIESGGITQTASLPETPFHHIDPSHDL 6300
LHNLDQSREQFIHQVTLSTPFVVSNCLPDPISLSIESGGITQTASLPETPFHHIDPSHDL
Sbjct: 2041 LHNLDQSREQFIHQVTLSTPFVVSNCLPDPISLSIESGGITQTASLPETPFHHIDPSHDL 2100
Query: 6301 VLEFKLNGCRTSSLKFSRSETFSTEAKFSGGKFSQIETISFDSHVGGGSVYVSCEKTMDA 6480
VLEFKLNGCRTSSLKFSRSETFSTEAKFSGGKFSQIETISFDSHVGGGSVYVSCEKTMDA
Sbjct: 2101 VLEFKLNGCRTSSLKFSRSETFSTEAKFSGGKFSQIETISFDSHVGGGSVYVSCEKTMDA 2160
Query: 6481 TCGAREVLIFVPFLLYNCTGTPLIVSDCTNETKGIYSVIPSCYNLIEQHFVQSRKVGLGI 6660
TCGAREVLIFVPFLLYNCTGTPLIVSDCTNETKGIYSVIPSCYNLIEQHFVQSRKVGLGI
Sbjct: 2161 TCGAREVLIFVPFLLYNCTGTPLIVSDCTNETKGIYSVIPSCYNLIEQHFVQSRKVGLGI 2220
Query: 6661 LTSEKDLLDKAVMEDIXXXXXXXXXXXXXXXXXRFIDKHATQSTRQVPFAAYPKDSAIVX 6840
LTSEKDLLDKAVMEDI RFIDKHATQSTRQVPFAAYPKDSAIV
Sbjct: 2221 LTSEKDLLDKAVMEDIPCSPSSSECSNTASSTERFIDKHATQSTRQVPFAAYPKDSAIVR 2280
Query: 6841 XXXXXXXXXXEVCFQGNDESGKVKACIYSPCPISRVSDTMIRVKRDLPGWVNSSSPYPLW 7020
EVCFQGNDESGKVKACIYSPCPISRVSDTMIRVKRDLPGWVNSSSPYPLW
Sbjct: 2281 KRSLSSKSLREVCFQGNDESGKVKACIYSPCPISRVSDTMIRVKRDLPGWVNSSSPYPLW 2340
Query: 7021 SAPFPLVPPSGSTNVVVPQPSPGESSLLSVTCSILGGALAGRTQAITFQPSHNLCYKQKG 7200
SAPFPLVPPSGSTNVVVPQPSPGESSLLSVTCSILGGALAGRTQAITFQPSHNLCYKQKG
Sbjct: 2341 SAPFPLVPPSGSTNVVVPQPSPGESSLLSVTCSILGGALAGRTQAITFQPSHNLCYKQKG 2400
Query: 7201 TNLVSHLAVGQHSQLQWTDTTRELLVSIRLNEPGWQWSGSFLPDHLGDTQLKIWNYVNKA 7380
TNLVSHLAVGQHSQLQWTDTTRELLVSIRLNEPGWQWSGSFLPDHLGDTQLKIWNYVNKA
Sbjct: 2401 TNLVSHLAVGQHSQLQWTDTTRELLVSIRLNEPGWQWSGSFLPDHLGDTQLKIWNYVNKA 2460
Query: 7381 FNMVRVEVQNANMSSGDEKIVGSVHGHVGTNFILLSDDDMGYMPYRIDNFSNERLRVYQQ 7560
FNMVRVEVQNANMSSGDEKIVGSVHGHVGTNFILLSDDDMGYMPYRIDNFSNERLRVYQQ
Sbjct: 2461 FNMVRVEVQNANMSSGDEKIVGSVHGHVGTNFILLSDDDMGYMPYRIDNFSNERLRVYQQ 2520
Query: 7561 KCETFDTIVHPYTSCPYAWDEPCYPHRLTIEVPGDRVLGSYAFEITKQPIAVHLRSTSEK 7740
KCETFDTIVHPYTSCPYAWDEPCYPHRLTIEVPGDRVLGSYAFEITKQPIAVHLRSTSEK
Sbjct: 2521 KCETFDTIVHPYTSCPYAWDEPCYPHRLTIEVPGDRVLGSYAFEITKQPIAVHLRSTSEK 2580
Query: 7741 PERTLLLSICAEGATKVFSVVDSGYHAIKDIKETFDSRFHEKGKKKLQTDNIIRYTETFL 7920
PERTLLLSICAEGATKVFSVVDSGYHAIKDIKETFDSRFHEKGKKKLQTDNIIRYTETFL
Sbjct: 2581 PERTLLLSICAEGATKVFSVVDSGYHAIKDIKETFDSRFHEKGKKKLQTDNIIRYTETFL 2640
Query: 7921 LVLPSIGISLVNSHPQELVYACASNVVLELSQSVDQQKLSFQISSLQIDNPLQNSSYPVI 8100
LVLPSIGISLVNSHPQELVYACASNVVLELSQSVDQQKLSFQISSLQIDNPLQNSSYPVI
Sbjct: 2641 LVLPSIGISLVNSHPQELVYACASNVVLELSQSVDQQKLSFQISSLQIDNPLQNSSYPVI 2700
Query: 8101 LSFNHDHEVIPPDWGMKNNKAILLSEIVQQVRGNSCDAVVYVDLAKWRKKDVSLVSFEYI 8280
LSFNHDHEVIPPDWGMKNNKAILLSEIVQQVRGNSCDAVVYVDLAKWRKKDVSLVSFEYI
Sbjct: 2701 LSFNHDHEVIPPDWGMKNNKAILLSEIVQQVRGNSCDAVVYVDLAKWRKKDVSLVSFEYI 2760
Query: 8281 NIRIGEFGXXXXXXXXXXXXXFVKAVLPNSQARLLPLSDPTLRPLIYDTGSKDISSEDTP 8460
NIRIGEFG FVKAVLPNSQARLLPLSDPTLRPLIYDTGSKDISSEDTP
Sbjct: 2761 NIRIGEFGLELELQTLLSLLEFVKAVLPNSQARLLPLSDPTLRPLIYDTGSKDISSEDTP 2820
Query: 8461 HARNIPVFNKNQRSIVALPIVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCSA 8640
HARNIPVFNKNQRSIVALPIVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCSA
Sbjct: 2821 HARNIPVFNKNQRSIVALPIVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCSA 2880
Query: 8641 PWMLRNGILTSGESLIHRGLMALADVEGARIHLKQLTIAHQITSWESFQEILVGHYTRQI 8820
PWMLRNGILTSGESLIHRGLMALADVEGARIHLKQLTIAHQITSWESFQEILVGHYTRQI
Sbjct: 2881 PWMLRNGILTSGESLIHRGLMALADVEGARIHLKQLTIAHQITSWESFQEILVGHYTRQI 2940
Query: 8821 LHEIYKVFGSAGVIGNPMGLARNVAFGIKDFLSAPNRSISKKPS 8952
LHEIYKVFGSAGVIGNPMG ARNVAFGIKDFLSAP+RSISK P+
Sbjct: 2941 LHEIYKVFGSAGVIGNPMGFARNVAFGIKDFLSAPSRSISKSPA 2984
Score = 415 bits (1067), Expect(2) = e-139
Identities = 215/268 (80%), Positives = 220/268 (81%)
Frame = +3
Query: 9117 GKDPVANGVIGEVFKGLTGILQSPIRGAEKHGLPGVISGVAMGITGLVARPTASILEVTG 9296
G+ + GVIGEVF+GLTG+LQSPIRGAEKHGLPGVISGVAMGITGLVARPTASILEVTG
Sbjct: 3039 GEGSRSKGVIGEVFEGLTGLLQSPIRGAEKHGLPGVISGVAMGITGLVARPTASILEVTG 3098
Query: 9297 KTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSWEEAVGTAVLMEVGDSLKFKGE 9476
KTA YSWEEAVGTAVLMEVGDSLKFKGE
Sbjct: 3099 KTAQSIRNRSRIHNIRSQRHRLRLPRPLSREQPLRPYSWEEAVGTAVLMEVGDSLKFKGE 3158
Query: 9477 KLVKCKALKQEGAFVVITGRXXXXXXXXXXXDFRKQGFLGVPIDLVWNIEREIGLESVIH 9656
KLVKCKALKQEGAFVVITGR DFRKQGFLGVPIDLVWNIEREIGLESVIH
Sbjct: 3159 KLVKCKALKQEGAFVVITGRLVLVLSSLSLVDFRKQGFLGVPIDLVWNIEREIGLESVIH 3218
Query: 9657 TDCSGGVVRIIGSNSDGVWNWRQDQQKKSSPTKKRWNNPSAQPLLQTNLEFPSEEKAEDL 9836
TDCSGGVVRIIGSNSDGVWNWRQDQQKKSSPTKKRWNNPSAQPLLQTNLEFPSEE+AEDL
Sbjct: 3219 TDCSGGVVRIIGSNSDGVWNWRQDQQKKSSPTKKRWNNPSAQPLLQTNLEFPSEEEAEDL 3278
Query: 9837 LSVLLSTIETGKSRSWHSRFVLSRSNIT 9920
LSVLLSTIETGKSRSWHSRFVLSRSNIT
Sbjct: 3279 LSVLLSTIETGKSRSWHSRFVLSRSNIT 3306
Score = 105 bits (262), Expect(2) = e-139
Identities = 54/67 (80%), Positives = 56/67 (82%)
Frame = +2
Query: 8924 PTGVSQKSPARIIQRMAQGNTSLFSSTIYALSDAATQFSKAAHKGIVAFTFNDHDVATME 9103
P+ KSPA IIQ MA G TSLFSSTIYALSDAATQFSKAAHKGIVAFTFNDHDVA ME
Sbjct: 2975 PSRSISKSPAGIIQGMAHGTTSLFSSTIYALSDAATQFSKAAHKGIVAFTFNDHDVARME 3034
Query: 9104 NHQLGQG 9124
QLG+G
Sbjct: 3035 KQQLGEG 3041
>pir||T17414 TipC protein - slime mold (Dictyostelium
discoideum)|gi|3420745|gb|AAC31916.1| TipC [Dictyostelium
discoideum]
Length = 3848
Score = 105 bits (261), Expect(3) = 5e-30
Identities = 120/527 (22%), Positives = 205/527 (38%), Gaps = 33/527 (6%)
Frame = +1
Query: 7468 TNFILLSDDDMGYMPYRIDNFSNERLRVYQQKCETFDTIVHPYTSCPYAWDEPCYPHRLT 7647
T I+L++ + PYRI+N + L + Q+K E +D V P TS PYAWD P P +L
Sbjct: 3073 TTMIILNEQNPELPPYRINNKTRFPLWIRQKKTEIWDK-VQPKTSIPYAWDHPILPKKLI 3131
Query: 7648 IEVPGDRVLGSYAFEITKQPIAVHLR---STSEKPERTLLLSICAEGATKVFSV------ 7800
IE P + +Y ++ V ++ S+ +SI A G T+V ++
Sbjct: 3132 IEFP-TGLTKTYRLGNLEENSIVSIKNPNSSGGYDRVDFQISIIANGPTRVLNIKERDLN 3190
Query: 7801 -------VDSGYHAIKDIKETFDSRFHEKGKKKLQTDNIIRYTETFLLVLPSIGISLVNS 7959
+ ++I+ T D ++ + F + L +IGIS++N
Sbjct: 3191 GDTNNNTISPQLNSIETFGITNDPNNPNNPNNNPNNNDKLNVKYEFSIDLSNIGISIINK 3250
Query: 7960 HP--QELVYACASNVVLELSQSVDQQKLSFQISSLQIDNPLQNSSYPVIL----SFNHDH 8121
P +E+VY + LE+ QS Q + F++ LQID+ ++++PV L NH
Sbjct: 3251 IPTREEIVYLSIDGLKLEVKQSKLDQYIQFKVDDLQIDDQRYSTNFPVFLCQSKKINHSI 3310
Query: 8122 EVIPPDWG---MKNNKAILLSEIVQQVRGNSCDAVV--YVDLAKWRK-KDVSLVSFEYIN 8283
P N + + + ++ + R K +++ F Y +
Sbjct: 3311 NQQPNQQSSSPQSTNTTTTTTTNTTTTNNTTQQQKLKPFLQFSATRTLKYSNIMFFRYFS 3370
Query: 8284 IRIGEFGXXXXXXXXXXXXXFVKAVLPNSQARLLPLSDPTLRPLIYDTGSKDISSEDTPH 8463
I I EF F+ L + TL P I T + + +++ +
Sbjct: 3371 ILIQEFDINLDEASILNALSFININLNSLNEHF------TLHPTI--TQEEILETKNASN 3422
Query: 8464 ARNIPVFNKNQRSIVALPIVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQFTLSF--CS 8637
N V+ E + P++ LSF C
Sbjct: 3423 IENHMVY----------------------------------FEMLHINPVKMNLSFISCK 3448
Query: 8638 APWMLRN--GILTSGESLI-HRGLMALADVEGARIHLKQLTIAHQITSWESFQEILVGHY 8808
+P + G + E LI + ++E A I H S + + H+
Sbjct: 3449 SPKETQAILGARSLAELLIGFKSNSPFLNIERAPIKFNGFIWEHPFLSTRQVIDEISLHF 3508
Query: 8809 TRQILHEIYKVFGSAGVIGNPMGLARNVAFGIKDFLSAPNRSISKKP 8949
+ Q++ + +K+FGS IGNP+ LA ++ G KDF P + K P
Sbjct: 3509 SYQMMSQAHKIFGSFDFIGNPIRLAESLGSGFKDFFHEPALGLVKSP 3555
Score = 51.6 bits (122), Expect = 2e-04
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +1
Query: 46 YLGRYIKDIQKDQLKISLWNGXXXXXXXXXXPEAFEYLQLPIALKQGRVGKLSIKIPWKK 225
YLG Y+ D+ KD +K+S +G + + +KQ + KLS+ +PWK
Sbjct: 13 YLGDYVDDLNKDNIKLSFLSGEAVLQDLKIKKTVLQSFLPNVIVKQAIIKKLSLHVPWKD 72
Query: 226 LHRDPVTIMIEDVFICA 276
L P I IE +++ A
Sbjct: 73 LKGKPAIIKIEGIYVLA 89
Score = 42.4 bits (98), Expect(3) = 5e-30
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 9153 VFKGLTGILQSPIRGA-EKHGLPGVISGVAMGITGLVARPTASILEVTGKTA 9305
V KG+TGI+ P +GA ++ G G+ G+ G+ +PT + ++ KT+
Sbjct: 3631 VIKGITGIIDEPYKGATQEKSWEGFFKGIGKGVLGVAVKPTVGVFDLVSKTS 3682
Score = 38.5 bits (88), Expect = 2.2
Identities = 51/265 (19%), Positives = 108/265 (40%), Gaps = 22/265 (8%)
Frame = +1
Query: 1285 VCSQSDTLETKPSYGARLELSKDHDVALSLKATLQPLEAAYDGGFILAVSNFFSGSRYFK 1464
+ S + T T S + + V SL +PL Y FI V++FF +
Sbjct: 666 ITSSTTTATTTQSTSTNSNNNNNIKVNYSLSIQSKPLTIVYYPKFISTVNDFFFKKEDDQ 725
Query: 1465 LQHERILSSLNGLESETRLAAKAE----YLLSSRNKVKW--DLDIKDLTLSFPGRLVESE 1626
+ +L L ET + KA+ LL+ NK + D+D++ + P +
Sbjct: 726 DVQDMVLEDLEKKAQETIESIKAQTRDKLLLAISNKTTFSIDMDLEAPIILVPESITNKN 785
Query: 1627 SYNLVLVLESLSIT--SSSTDALSQIPRLQSDVDHVVNSLQSSVEALDAFQ---VKDLYD 1791
+ L+L L L I Q+ +LQ + Q + + Q ++ YD
Sbjct: 786 TNLLILDLGKLLINHYPKQQQLQQQLQQLQQEQGQEQEQEQKQEQKQEQEQKDWKEEFYD 845
Query: 1792 HFDIKICNLEMKLMKI-HPFQELPLVEK----------SSLLIKFASCIIPEESILKQLE 1938
+ K+ N ++ L + + ++++ V+K ++ +K + + +L L+
Sbjct: 846 EYLFKLINTQVLLANLKNDWRDIEQVKKFRMNIANPLNANFTLKISK--LNNRQLLTSLK 903
Query: 1939 VEATLPMFNVHFSPSIFKGVMSVIE 2013
+ A++ + + S + ++++I+
Sbjct: 904 LMASIDLLEFYLSSCQYVNLVNIIQ 928
Score = 30.8 bits (68), Expect(3) = 5e-30
Identities = 11/47 (23%), Positives = 28/47 (59%)
Frame = +2
Query: 8942 KSPARIIQRMAQGNTSLFSSTIYALSDAATQFSKAAHKGIVAFTFND 9082
KSP +++G +SL +++++ +D+ ++ + KG+V + +D
Sbjct: 3553 KSPQDFAAGLSKGTSSLINNSVFGFADSTSKITGTISKGLVQLSLDD 3599
>ref|NP_013060.1| vacuolar Protein Sorting; Vps13p [Saccharomyces
cerevisiae]|gi|2499125|sp|Q07878|VP13_YEAST Vacuolar
protein sorting-associated protein
VPS13|gi|2132654|pir||S64791 VPS13 protein - yeast
(Saccharomyces cerevisiae)|gi|1360233|emb|CAA97491.1| ORF
YLL040c [Saccharomyces
cerevisiae]|gi|2155302|gb|AAC08284.1| Soi1p
[Saccharomyces cerevisiae]
Length = 3144
Score = 85.1 bits (209), Expect(2) = 1e-16
Identities = 124/562 (22%), Positives = 213/562 (37%), Gaps = 23/562 (4%)
Frame = +1
Query: 7309 WSGSFLPDHLGDTQLKIWNYVNKAFNMVRVEVQN------ANMSSGDEKIVGSVHGHVGT 7470
WS F ++G T LK+ N ++++E+ + G ++ S+
Sbjct: 2375 WSQPFFIKNVGVTYLKVLK--NSRHKLLKIEILLDKATIFIRIKDGGDRWPFSIRNFSDH 2432
Query: 7471 NFILLSDDDMGYM-PYRIDNFSNERLRVYQQKCETFDTIVHPYTS---CPYAWDEPCYPH 7638
+FI D PY+ D+ SNE +F I + S PYAWD P
Sbjct: 2433 DFIFYQRDPRKVSDPYK-DDQSNE------SSSRSFKPIFYRIPSKSIMPYAWDFPTAKE 2485
Query: 7639 RLTIEVPGDRVLGSYAFEITKQPIAVHLRSTSEKPERTLLLSICAEGATKVFSVVDS--- 7809
+ + G R EI + P + + +KP + L + A+ + +V+
Sbjct: 2486 KYLVLESGTRTREVRLAEIGELPPLRLDKRSKDKPAPIVGLHVVADDDMQALVIVNYKAN 2545
Query: 7810 -GYHAIKDIKETFDSRFHEKGKKK---LQTDNIIRYTETFLLVLPSIGISLVNSHPQELV 7977
G + +K T S +Q D + ++ +GISL+N QEL+
Sbjct: 2546 VGLYKLKTASATTTSSVSVNSSVTDGFVQKDEDEKVNTQIVVSFKGVGISLINGRLQELL 2605
Query: 7978 YACASNVVLELSQSVDQQKLSFQISSLQIDNPLQNSSYPVILSFNHDHEVIPPDWGMKNN 8157
Y + L ++S Q S+++ +QIDN L + +Y IL + E+ + ++N+
Sbjct: 2606 YINMRGIELRYNESKAYQTFSWKMKWMQIDNQLFSGNYSNIL---YPTEIPYTEKEIENH 2662
Query: 8158 KAILLSEIVQQVRGNSCDAVVYVDLAKWRKKDVSLVSFEYINIRIGEFGXXXXXXXXXXX 8337
I S + +V +S AV Y F+++ + I EF
Sbjct: 2663 PVI--SGSISKV-NDSLQAVPY---------------FKHVTLLIQEFSIQLDEDMLYAM 2704
Query: 8338 XXFVKAVLPNSQARLLPLSDPTLRPLIYDTGSKDISSEDTPHARNIPVFNKNQRSIVALP 8517
F+K P S P I D S+D ++ + LP
Sbjct: 2705 MDFIK--FPGS-------------PWIMD--SRDYKYDEE----------------IQLP 2731
Query: 8518 IVVPIGAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCS----APWMLRNGILTSGESL 8685
V + + IY E F + P LSF +P + + SL
Sbjct: 2732 DVSEL-----------KTAGDIYFEIFHIQPTVLHLSFIRSDEISPGLAEETEESFSSSL 2780
Query: 8686 --IHRGLMALADVEGARIHLKQLTIAHQITSWESFQEILVGHYTRQILHEIYKVFGSAGV 8859
+H M L ++ A + + L + + + + HYT Q +++I+K+ GSA
Sbjct: 2781 YYVHMFAMTLGNINEAPVKVNSLFMDNVRVPLPILMDHIERHYTTQFVYQIHKILGSADC 2840
Query: 8860 IGNPMGLARNVAFGIKDFLSAP 8925
GNP+GL ++ G+ D P
Sbjct: 2841 FGNPVGLFNTISSGVWDLFYEP 2862
Score = 68.2 bits (165), Expect = 3e-09
Identities = 32/100 (32%), Positives = 53/100 (53%)
Frame = +1
Query: 31 NLLLGYLGRYIKDIQKDQLKISLWNGXXXXXXXXXXPEAFEYLQLPIALKQGRVGKLSIK 210
NLL LG Y+++ +QL + +W+G + + L LPI +K G +G L +
Sbjct: 8 NLLNRLLGSYVENFDPNQLNVGIWSGDVKLKNLKLRKDCLDSLNLPIDVKSGILGDLVLT 67
Query: 211 IPWKKLHRDPVTIMIEDVFICASQRNDQEWSSDVVEKREF 330
+PW L PV I+IED ++ S R++ + + + KR F
Sbjct: 68 VPWSSLKNKPVKIIIEDCYLLCSPRSEDHENDEEMIKRAF 107
Score = 27.7 bits (60), Expect(2) = 1e-16
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 8948 PARIIQRMAQGNTSLFSSTIYALSDAATQFSKAAHKGI 9061
P I +A+G S T++ LSD+ ++F+ + KG+
Sbjct: 2872 PQEIGIHLAKGGLSFAKKTVFGLSDSMSKFTGSMAKGL 2909
>sp|P87319|YOS1_SCHPO Hypothetical protein C21C3.01c in chromosome II
Length = 3011
Score = 87.8 bits (216), Expect = 3e-15
Identities = 117/556 (21%), Positives = 205/556 (36%), Gaps = 17/556 (3%)
Frame = +1
Query: 7309 WSGSFLPDHLGDTQLKIWNYVNKAFNMVRVEVQNANMSSGDEKIVGSVHGHVGTNFILLS 7488
WS SF + +G T +++ + + + ++NA T FI +
Sbjct: 2315 WSSSFYIEEIGSTHVRLMTSEGEKLLRLEIVIKNA------------------TIFISIF 2356
Query: 7489 DDDMGYMPYRIDNFSNERLRVYQQ--------KCETFDTIVH---PYTSCPYAWDEPCYP 7635
++ G PY I N S L+ +Q K T H P++ Y+WD PC
Sbjct: 2357 EET-GDWPYYIKNESGVLLKFWQVNPIDASEGKNNTALLKYHDIPPHSEVKYSWDYPCCA 2415
Query: 7636 HRLTIEVPGDRVLGSYAFEITKQPIAVHLRSTSEKPERTLLLSICAEGATKVFSVVD-SG 7812
++ GD+ + EI P++ + + + + I A G +K+ + D
Sbjct: 2416 NKEIALCYGDQKCLTTLAEIG--PLSPFKFTDASNNTKFISRDIVANGLSKILILKDYDP 2473
Query: 7813 YHAIKDIKETFDSRFHEKGKKKLQTDNIIRYTETFLLVLPSIGISLVNSHPQELVYACAS 7992
A++ K E+ Q D+ I + FLL IGISLV + QEL Y
Sbjct: 2474 SKAVRKPKIYSKVSTEERDFNLEQFDSGIDLSVKFLL--EGIGISLVERNTQELAYLTFH 2531
Query: 7993 NVVLELSQSVDQQKLSFQISSLQIDNPLQNSSYPVILSFNHDHEVIPPDWGMKNNKAILL 8172
+ L + S + + +QIDN L YP+IL ++ + M +N +
Sbjct: 2532 GINLFFTDSHLIRTFKLDVRWIQIDNQLYGGIYPIILY----PSILSQEDTMNDNSLLPT 2587
Query: 8173 SEIVQQVRGNSCDAVVYVDLAKWRKKDVSLVSFEYINIRIGEFGXXXXXXXXXXXXXFVK 8352
+ V N V YV +Y I + E ++K
Sbjct: 2588 FHSMVAVVKNDTYGVTYV---------------KYATILLQELTIEIDEDFAFAALEYIK 2632
Query: 8353 AVLPNSQARLLPLSDPTLRPLIYDTGSKDISSEDTPHARNIPVFNKNQRSIVALPIVVPI 8532
+P S+ + D +L L+ + D+
Sbjct: 2633 DSVPRSKRNTGKMFDDSLE-LVPENLGNDL------------------------------ 2661
Query: 8533 GAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCSAPWMLR-NGILTSGES----LIHRG 8697
K+Y E +L P + LSF + +G + S + ++
Sbjct: 2662 ---------------KVYFEVLNLQPTEMHLSFVRTERINNTDGTVVSSHNPFVFFVNVL 2706
Query: 8698 LMALADVEGARIHLKQLTIAHQITSWESFQEILVGHYTRQILHEIYKVFGSAGVIGNPMG 8877
MA+ ++ A + L L + + S E++ HY++++L +++K+ GSA +GNP+G
Sbjct: 2707 SMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKNHYSQELLSQVHKIVGSADFLGNPVG 2766
Query: 8878 LARNVAFGIKDFLSAP 8925
L + G D P
Sbjct: 2767 LFTTITSGFADIFYEP 2782
Score = 70.1 bits (170), Expect = 7e-10
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 8/176 (4%)
Frame = +1
Query: 1 MLEGYVQGFVNLLLGYLGRYIKDIQKDQLKISLWNGXXXXXXXXXXPEAFEYLQLPIALK 180
MLEG V G +N +LG Y+ ++ QL I +W G PEA + L +PI +
Sbjct: 1 MLEGLVAGLLNKILG---SYVDNLDTKQLNIGVWGGHVSLHNLRIKPEALDKLGIPIEIT 57
Query: 181 QGRVGKLSIKIPWKKLHRDPVTIMIEDVFICASQRNDQEWSSDVVEKREFA-GXXXXXXX 357
G +G +++IPW L +TI IED+++ + + D +E+ + A
Sbjct: 58 SGLIGTFTLEIPWSNLRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSF 117
Query: 358 XXXXXXXRRVFDNPGGN-------SYMSYITAKVNRSGELYDDLPQYSISAELTDV 504
R + N S++ Y+ AK+ + ++Y + L+D+
Sbjct: 118 EILRKNFRETLEESSSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRFEDNLSDL 173
Score = 45.4 bits (106), Expect = 0.018
Identities = 27/91 (29%), Positives = 42/91 (45%)
Frame = +1
Query: 4867 LLEVLMRNFLLQANLAEKNMESLVSCDLEVNYNNMHKVLWEPFIEPWNFDIKLSRKFDAN 5046
LL + ++ F + N + S +L +N+ N WEPF+EPW + +SR
Sbjct: 1704 LLNINIKPFQVDLNDWSSELNSNAHLELFMNFYNFSNSHWEPFLEPWKVGVHISRN---- 1759
Query: 5047 SLLNNAGLTEVIVASSNQLNLNLTESLFECI 5139
N T V V S +L+L +T L E +
Sbjct: 1760 ---PNTSKTAVHVFSREKLDLVITPQLIETL 1787
>pir||T50345 vacuolar protein sorting-associated protein yeast vps13 homolog
[imported] - fission yeast (Schizosaccharomyces pombe)
Length = 3071
Score = 87.8 bits (216), Expect = 3e-15
Identities = 117/556 (21%), Positives = 205/556 (36%), Gaps = 17/556 (3%)
Frame = +1
Query: 7309 WSGSFLPDHLGDTQLKIWNYVNKAFNMVRVEVQNANMSSGDEKIVGSVHGHVGTNFILLS 7488
WS SF + +G T +++ + + + ++NA T FI +
Sbjct: 2315 WSSSFYIEEIGSTHVRLMTSEGEKLLRLEIVIKNA------------------TIFISIF 2356
Query: 7489 DDDMGYMPYRIDNFSNERLRVYQQ--------KCETFDTIVH---PYTSCPYAWDEPCYP 7635
++ G PY I N S L+ +Q K T H P++ Y+WD PC
Sbjct: 2357 EET-GDWPYYIKNESGVLLKFWQVNPIDASEGKNNTALLKYHDIPPHSEVKYSWDYPCCA 2415
Query: 7636 HRLTIEVPGDRVLGSYAFEITKQPIAVHLRSTSEKPERTLLLSICAEGATKVFSVVD-SG 7812
++ GD+ + EI P++ + + + + I A G +K+ + D
Sbjct: 2416 NKEIALCYGDQKCLTTLAEIG--PLSPFKFTDASNNTKFISRDIVANGLSKILILKDYDP 2473
Query: 7813 YHAIKDIKETFDSRFHEKGKKKLQTDNIIRYTETFLLVLPSIGISLVNSHPQELVYACAS 7992
A++ K E+ Q D+ I + FLL IGISLV + QEL Y
Sbjct: 2474 SKAVRKPKIYSKVSTEERDFNLEQFDSGIDLSVKFLL--EGIGISLVERNTQELAYLTFH 2531
Query: 7993 NVVLELSQSVDQQKLSFQISSLQIDNPLQNSSYPVILSFNHDHEVIPPDWGMKNNKAILL 8172
+ L + S + + +QIDN L YP+IL ++ + M +N +
Sbjct: 2532 GINLFFTDSHLIRTFKLDVRWIQIDNQLYGGIYPIILY----PSILSQEDTMNDNSLLPT 2587
Query: 8173 SEIVQQVRGNSCDAVVYVDLAKWRKKDVSLVSFEYINIRIGEFGXXXXXXXXXXXXXFVK 8352
+ V N V YV +Y I + E ++K
Sbjct: 2588 FHSMVAVVKNDTYGVTYV---------------KYATILLQELTIEIDEDFAFAALEYIK 2632
Query: 8353 AVLPNSQARLLPLSDPTLRPLIYDTGSKDISSEDTPHARNIPVFNKNQRSIVALPIVVPI 8532
+P S+ + D +L L+ + D+
Sbjct: 2633 DSVPRSKRNTGKMFDDSLE-LVPENLGNDL------------------------------ 2661
Query: 8533 GAPWQHIHLLARRRRKIYVETFDLAPIQFTLSFCSAPWMLR-NGILTSGES----LIHRG 8697
K+Y E +L P + LSF + +G + S + ++
Sbjct: 2662 ---------------KVYFEVLNLQPTEMHLSFVRTERINNTDGTVVSSHNPFVFFVNVL 2706
Query: 8698 LMALADVEGARIHLKQLTIAHQITSWESFQEILVGHYTRQILHEIYKVFGSAGVIGNPMG 8877
MA+ ++ A + L L + + S E++ HY++++L +++K+ GSA +GNP+G
Sbjct: 2707 SMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKNHYSQELLSQVHKIVGSADFLGNPVG 2766
Query: 8878 LARNVAFGIKDFLSAP 8925
L + G D P
Sbjct: 2767 LFTTITSGFADIFYEP 2782
Score = 70.1 bits (170), Expect = 7e-10
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 8/176 (4%)
Frame = +1
Query: 1 MLEGYVQGFVNLLLGYLGRYIKDIQKDQLKISLWNGXXXXXXXXXXPEAFEYLQLPIALK 180
MLEG V G +N +LG Y+ ++ QL I +W G PEA + L +PI +
Sbjct: 1 MLEGLVAGLLNKILG---SYVDNLDTKQLNIGVWGGHVSLHNLRIKPEALDKLGIPIEIT 57
Query: 181 QGRVGKLSIKIPWKKLHRDPVTIMIEDVFICASQRNDQEWSSDVVEKREFA-GXXXXXXX 357
G +G +++IPW L +TI IED+++ + + D +E+ + A
Sbjct: 58 SGLIGTFTLEIPWSNLRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSF 117
Query: 358 XXXXXXXRRVFDNPGGN-------SYMSYITAKVNRSGELYDDLPQYSISAELTDV 504
R + N S++ Y+ AK+ + ++Y + L+D+
Sbjct: 118 EILRKNFRETLEESSSNPNISRKQSFIEYLIAKLTDNIQIYIERIHLRFEDNLSDL 173
Score = 45.4 bits (106), Expect = 0.018
Identities = 27/91 (29%), Positives = 42/91 (45%)
Frame = +1
Query: 4867 LLEVLMRNFLLQANLAEKNMESLVSCDLEVNYNNMHKVLWEPFIEPWNFDIKLSRKFDAN 5046
LL + ++ F + N + S +L +N+ N WEPF+EPW + +SR
Sbjct: 1704 LLNINIKPFQVDLNDWSSELNSNAHLELFMNFYNFSNSHWEPFLEPWKVGVHISRN---- 1759
Query: 5047 SLLNNAGLTEVIVASSNQLNLNLTESLFECI 5139
N T V V S +L+L +T L E +
Sbjct: 1760 ---PNTSKTAVHVFSREKLDLVITPQLIETL 1787
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 142
effective length of database: 239,044,009
effective search space used: 766136048845
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)