BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV536970.f
         (120 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79625.1|AC027665_26  F5M15.5 [Arabidopsis thaliana]|gi...    86   2e-16
gb|AAM65021.1|  unknown [Arabidopsis thaliana]                     86   2e-16
pir||S71112  catalase (EC 1.11.1.6) 3 - Arabidopsis thaliana       86   2e-16
pir||T51752  catalase (EC 1.11.1.6) [similarity] - Arabidops...    86   2e-16
gb|AAC49807.1|  catalase 3 [Arabidopsis thaliana]|gi|2511726...    86   2e-16

>gb|AAF79625.1|AC027665_26 F5M15.5 [Arabidopsis thaliana]|gi|8886925|gb|AAF80611.1|AC069251_4
           F2D10.11 [Arabidopsis thaliana]
          Length = 1013

 Score = 85.9 bits (211), Expect = 2e-16
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 1   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
           YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 45  YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 84




 Score = 65.9 bits (159), Expect = 2e-10
 Identities = 29/39 (74%), Positives = 35/39 (89%)
 Frame = +1

Query: 4   RPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
           RPSSA+++PF+TTN GAPV NN SSLT+G RGP+LLEDY
Sbjct: 528 RPSSAHDSPFFTTNSGAPVWNNNSSLTVGTRGPILLEDY 566



>gb|AAM65021.1| unknown [Arabidopsis thaliana]
          Length = 492

 Score = 85.9 bits (211), Expect = 2e-16
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 1   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
           YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45



>pir||S71112 catalase (EC 1.11.1.6) 3 - Arabidopsis thaliana
          Length = 492

 Score = 85.9 bits (211), Expect = 2e-16
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 1   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
           YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45



>pir||T51752 catalase (EC 1.11.1.6) [similarity] - Arabidopsis thaliana
           (fragment)|gi|3158370|gb|AAC39465.1| catalase 3
           [Arabidopsis thaliana]
          Length = 115

 Score = 85.9 bits (211), Expect = 2e-16
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 1   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
           YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45



>gb|AAC49807.1| catalase 3 [Arabidopsis thaliana]|gi|2511726|gb|AAC17732.1|
           catalase 3 [Arabidopsis thaliana]
          Length = 492

 Score = 85.9 bits (211), Expect = 2e-16
 Identities = 40/40 (100%), Positives = 40/40 (100%)
 Frame = +1

Query: 1   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 120
           YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY
Sbjct: 6   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDY 45



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.310    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 15
effective length of database: 409,102,851
effective search space used: 9818468424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)