BLASTX 1.4.13-Paracel [2002-12-12]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Z18201.f
         (137 letters)

Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr 
           1,339,046 sequences; 429,188,541 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_173459.1|  plastocyanin; protein id: At1g20340.1, sup...    62   2e-09
pir||S33707  DNA-damage repair protein DRT112 precursor - Ar...    62   2e-09
gb|AAM64356.1|  plastocyanin, putative [Arabidopsis thaliana]      62   3e-09
emb|CAB66894.1|  putative plastocyanin [Arabidopsis thaliana]      59   2e-08
sp|P00294|PLAS_CAPBU  Plastocyanin|gi|65836|pir||CUSU plasto...    59   2e-08

>ref|NP_173459.1| plastocyanin; protein id: At1g20340.1, supported by cDNA: 23406.,
           supported by cDNA: gi_12247994, supported by cDNA:
           gi_13265533, supported by cDNA: gi_13605743, supported
           by cDNA: gi_166695 [Arabidopsis
           thaliana]|gi|12644265|sp|P42699|PLAT_ARATH Plastocyanin
           major isoform, chloroplast precursor
           (DNA-damage-repair/toleration protein
           DRT112)|gi|25282804|pir||B86337 plastocyanin
           [similarity] - Arabidopsis
           thaliana|gi|9558592|gb|AAF88155.1|AC026234_6 Contains
           similarity to a DNA-damage-repair/toleration protein
           DRT112 precursor from Arabidopsis thaliana gi|1169201
           and is a member of the copper binding proteins family
           PF|00127.  ESTs gb|BE039446, gb|T46296, gb|N64992,
           gb|T21043, gb|BE039361, gb|T41789, gb|AA728654,
           gb|T22293, gb|T42572, gb|R65100, gb|N65354, gb|N37323,
           gb|R90003, gb|BE039026, gb|BE038950, gb|AA713227 come
           from this gene|gi|11692900|gb|AAG40053.1|AF324702_1
           At1g20340 [Arabidopsis
           thaliana]|gi|11908064|gb|AAG41461.1|AF326879_1 putative
           plastocyanin [Arabidopsis
           thaliana]|gi|12247995|gb|AAG50089.1|AF334383_1 putative
           plastocyanin [Arabidopsis
           thaliana]|gi|13605744|gb|AAK32865.1|AF361853_1
           At1g20340/F14O10_4 [Arabidopsis
           thaliana]|gi|24111321|gb|AAN46784.1| At1g20340/F14O10_4
           [Arabidopsis thaliana]
          Length = 167

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 28/29 (96%), Positives = 28/29 (96%)
 Frame = +3

Query: 24  EVALTEPGTYSFYCAPQQGAGMVGKVTVN 110
           EVALTEPGTYSFYCAP QGAGMVGKVTVN
Sbjct: 139 EVALTEPGTYSFYCAPHQGAGMVGKVTVN 167



>pir||S33707 DNA-damage repair protein DRT112 precursor - Arabidopsis
           thaliana|gi|166696|gb|AAA32787.1| DRT112
          Length = 167

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 28/29 (96%), Positives = 28/29 (96%)
 Frame = +3

Query: 24  EVALTEPGTYSFYCAPQQGAGMVGKVTVN 110
           EVALTEPGTYSFYCAP QGAGMVGKVTVN
Sbjct: 139 EVALTEPGTYSFYCAPHQGAGMVGKVTVN 167



>gb|AAM64356.1| plastocyanin, putative [Arabidopsis thaliana]
          Length = 167

 Score = 61.6 bits (148), Expect = 3e-09
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +3

Query: 24  EVALTEPGTYSFYCAPQQGAGMVGKVTVN 110
           EVALTEPGTYSFYCAP QGAGMVGK+TVN
Sbjct: 139 EVALTEPGTYSFYCAPHQGAGMVGKITVN 167



>emb|CAB66894.1| putative plastocyanin [Arabidopsis thaliana]
          Length = 167

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = +3

Query: 24  EVALTEPGTYSFYCAPQQGAGMVGKVTVN 110
           EVALTEPGTYSFYCAP QGAGMVGKVT N
Sbjct: 139 EVALTEPGTYSFYCAPHQGAGMVGKVTGN 167



>sp|P00294|PLAS_CAPBU Plastocyanin|gi|65836|pir||CUSU plastocyanin - shepherd's
           purse|gi|223148|prf||0512262A plastocyanin
          Length = 99

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = +3

Query: 24  EVALTEPGTYSFYCAPQQGAGMVGKVTVN 110
           EVALTE GTYSFYCAP QGAGMVGKVTVN
Sbjct: 71  EVALTEAGTYSFYCAPHQGAGMVGKVTVN 99



  Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
    Posted date:  Feb 17, 2003 10:02 AM
  Number of letters in database: 429,188,541
  Number of sequences in database:  1,339,046
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 21
effective length of database: 401,068,575
effective search space used: 9625645800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)