BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.1134.C1
(1111 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52314 chlorophyll a/b-binding protein Lhcb6 [imported... 494 e-139
ref|NP_173034.1| chlorophyll binding protein, putative; pro... 494 e-139
gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP... 412 e-114
sp|P36494|CB4_SPIOL Chlorophyll A-B binding protein CP24, c... 411 e-113
sp|P27525|CB4B_LYCES Chlorophyll A-B binding protein CP24 1... 405 e-112
>pir||T52314 chlorophyll a/b-binding protein Lhcb6 [imported] - Arabidopsis
thaliana|gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6
protein [Arabidopsis thaliana]
Length = 258
Score = 494 bits (1272), Expect = e-139
Identities = 240/258 (93%), Positives = 240/258 (93%)
Frame = +1
Query: 118 MAMXXXXXXXXXXXXXXXXXXKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPA 297
MAM KRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPA
Sbjct: 1 MAMAVSGAVLSGIGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPA 60
Query: 298 VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 477
VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ
Sbjct: 61 VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 478 AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 657
AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK
Sbjct: 121 AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 658 TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 837
TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML
Sbjct: 181 TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Query: 838 IFYFEAGQGKTPLGALGL 891
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>ref|NP_173034.1| chlorophyll binding protein, putative; protein id: At1g15820.1,
supported by cDNA: gi_12083257, supported by cDNA:
gi_17473664, supported by cDNA: gi_20148630, supported
by cDNA: gi_4741959 [Arabidopsis
thaliana]|gi|25299031|pir||F86292 probable chlorophyll
A-B binding protein F7H2.16 - Arabidopsis
thaliana|gi|8927661|gb|AAF82152.1|AC034256_16 Identical
to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this
gene|gi|12083258|gb|AAG48788.1|AF332425_1 putative
chlorophyll binding protein [Arabidopsis
thaliana]|gi|17473665|gb|AAL38289.1| Lhcb6 protein
[Arabidopsis thaliana]|gi|20148631|gb|AAM10206.1|
chlorophyll A-B binding protein [Arabidopsis thaliana]
Length = 258
Score = 494 bits (1272), Expect = e-139
Identities = 240/258 (93%), Positives = 240/258 (93%)
Frame = +1
Query: 118 MAMXXXXXXXXXXXXXXXXXXKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPA 297
MAM KRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPA
Sbjct: 1 MAMAVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPA 60
Query: 298 VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 477
VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ
Sbjct: 61 VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 478 AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 657
AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK
Sbjct: 121 AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 658 TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 837
TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML
Sbjct: 181 TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Query: 838 IFYFEAGQGKTPLGALGL 891
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 412 bits (1059), Expect = e-114
Identities = 198/238 (83%), Positives = 213/238 (89%), Gaps = 2/238 (0%)
Frame = +1
Query: 184 RGATALASGVG--TGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGD 357
R T LA+ +G G R+ ++VAAAA PKKSWIP V+GGGN +DPEWLDGSLPGD
Sbjct: 23 RSQTLLATSIGGKVGVAVSPRRLIVVAAAA--PKKSWIPGVRGGGNLVDPEWLDGSLPGD 80
Query: 358 FGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPF 537
FGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGV WFEAGA P+AIAPF
Sbjct: 81 FGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPF 140
Query: 538 SFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFF 717
SFGSLLGTQL+LMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFAN TG+QGYPGG+FF
Sbjct: 141 SFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANATGEQGYPGGKFF 200
Query: 718 DPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAGQGKTPLGALGL 891
DPLG AG +DGVY PD EKLERLKLAEIKH+R+AM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 201 DPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 258
>sp|P36494|CB4_SPIOL Chlorophyll A-B binding protein CP24, chloroplast
precursor|gi|541819|pir||S40210 chlorophyll a/b-binding
protein CP24 precursor -
spinach|gi|437991|emb|CAA81105.1| 20 kDa protein of CP24
precursor protein [Spinacia oleracea]
Length = 261
Score = 411 bits (1056), Expect = e-113
Identities = 194/229 (84%), Positives = 209/229 (90%)
Frame = +1
Query: 205 SGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLG 384
S VG G RK ++VAAAAA PKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLG
Sbjct: 34 SKVGAGVSTTSRKLVVVAAAAA-PKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLG 92
Query: 385 KDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQ 564
KDPAFLKWYREAELIHGRWAM AVLGIFVGQAW+G+ WFEAGA P A+APFSFG+LLGTQ
Sbjct: 93 KDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQ 152
Query: 565 LLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKN 744
LLLMGWVESKRWVDFF+PDSQSVEWATPWS+TAENF+N TG+QGYPGG+FFDPL LAG
Sbjct: 153 LLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTI 212
Query: 745 RDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFYFEAGQGKTPLGALGL 891
+GVY PD +KLERLKLAEIKH+RLAM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 213 SNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 261
>sp|P27525|CB4B_LYCES Chlorophyll A-B binding protein CP24 10B, chloroplast precursor
(CAB-10B) (LHCP)|gi|100202|pir||S11878 chlorophyll
a/b-binding protein Cab10B -
tomato|gi|170400|gb|AAA34146.1| chlorophyll b-binding
protein
Length = 256
Score = 405 bits (1040), Expect = e-112
Identities = 190/217 (87%), Positives = 201/217 (92%)
Frame = +1
Query: 241 KTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 420
K +VAAAA PKKSWIPAVK GGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREA
Sbjct: 40 KRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREA 99
Query: 421 ELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRW 600
ELIHGRWAMAAVLGIFVGQAWSG+ WFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRW
Sbjct: 100 ELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 159
Query: 601 VDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKL 780
VDFF+ DSQS++WATPWSKTAENFAN+TG+QGYPGG+FFDPL LAG +GVY PD EKL
Sbjct: 160 VDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKL 219
Query: 781 ERLKLAEIKHSRLAMVAMLIFYFEAGQGKTPLGALGL 891
ERLKLAEIKHSRLAM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 220 ERLKLAEIKHSRLAMLAMLIFYFEAGQGKTPLGALGL 256
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 124
effective length of database: 263,146,837
effective search space used: 64470975065
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)