BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.8.C1
(1775 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF26462.1|AC007323_3 T25K16.10 [Arabidopsis thaliana] 888 0.0
ref|NP_563618.1| expressed protein; protein id: At1g01110.1... 667 0.0
gb|AAM62593.1| unknown [Arabidopsis thaliana] 655 0.0
ref|NP_567191.1| hypothetical protein; protein id: At4g0082... 416 e-115
ref|NP_192802.1| putative protein; protein id: At4g10640.1 ... 152 1e-35
>gb|AAF26462.1|AC007323_3 T25K16.10 [Arabidopsis thaliana]
Length = 527
Score = 888 bits (2294), Expect = 0.0
Identities = 455/527 (86%), Positives = 455/527 (86%)
Frame = +1
Query: 1 MGKKNGSSSWLTAVKRAFRSPTKKDHSNDVXXXXXXXXXXXXXXXXPATQESPVKSSGIS 180
MGKKNGSSSWLTAVKRAFRSPTKKDHSNDV PATQESPVKSSGIS
Sbjct: 1 MGKKNGSSSWLTAVKRAFRSPTKKDHSNDVEEDEEKKREKRRWFRKPATQESPVKSSGIS 60
Query: 181 PPAPQEDSLNVNSKXXXXXXXXXXXXXXXXXXGKPPSAVVPIATSASKTLAPRRIYYARE 360
PPAPQEDSLNVNSK GKPPSAVVPIATSASKTLAPRRIYYARE
Sbjct: 61 PPAPQEDSLNVNSKPSPETAPSYATTTPPSNAGKPPSAVVPIATSASKTLAPRRIYYARE 120
Query: 361 NYAAVVIQTSFRGYXXXXXXXXXKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVL 540
NYAAVVIQTSFRGY KGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVL
Sbjct: 121 NYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQSRVL 180
Query: 541 DQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDDRPHTIDAVKV 720
DQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDDRPHTIDAVKV
Sbjct: 181 DQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDDRPHTIDAVKV 240
Query: 721 MLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTXXXXXXXXXXXRPKWLDRWMATRPWD 900
MLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQST RPKWLDRWMATRPWD
Sbjct: 241 MLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTEGHHEVELEEERPKWLDRWMATRPWD 300
Query: 901 KRASSRASVDQRVSVKTVEIDTSQPYSRTXXXXXXXXXXXXXXXXXXHHYQSRNNFSATP 1080
KRASSRASVDQRVSVKTVEIDTSQPYSRT HHYQSRNNFSATP
Sbjct: 301 KRASSRASVDQRVSVKTVEIDTSQPYSRTGAGSPSRGQRPSSPSRTSHHYQSRNNFSATP 360
Query: 1081 SPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSFTARSGCSISTTMVNN 1260
SPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSFTARSGCSISTTMVNN
Sbjct: 361 SPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSFTARSGCSISTTMVNN 420
Query: 1261 ASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSYPVPPPAEYEDNNSLR 1440
ASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSYPVPPPAEYEDNNSLR
Sbjct: 421 ASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSYPVPPPAEYEDNNSLR 480
Query: 1441 SPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFRNWLR 1581
SPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFRNWLR
Sbjct: 481 SPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFRNWLR 527
>ref|NP_563618.1| expressed protein; protein id: At1g01110.1, supported by cDNA:
148018. [Arabidopsis thaliana]
Length = 364
Score = 667 bits (1721), Expect = 0.0
Identities = 335/364 (92%), Positives = 335/364 (92%)
Frame = +1
Query: 490 MTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSS 669
MTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSS
Sbjct: 1 MTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSS 60
Query: 670 AAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTXXXXXXXXX 849
AAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQST
Sbjct: 61 AAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTEGHHEVELE 120
Query: 850 XXRPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTXXXXXXXXXXXXXX 1029
RPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRT
Sbjct: 121 EERPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTGAGSPSRGQRPSSP 180
Query: 1030 XXXXHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNY 1209
HHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNY
Sbjct: 181 SRTSHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNY 240
Query: 1210 SFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRL 1389
SFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRL
Sbjct: 241 SFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRL 300
Query: 1390 SYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFR 1569
SYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFR
Sbjct: 301 SYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFR 360
Query: 1570 NWLR 1581
NWLR
Sbjct: 361 NWLR 364
>gb|AAM62593.1| unknown [Arabidopsis thaliana]
Length = 364
Score = 655 bits (1691), Expect = 0.0
Identities = 330/364 (90%), Positives = 330/364 (90%)
Frame = +1
Query: 490 MTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSS 669
MTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSS
Sbjct: 1 MTLRCMQALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSS 60
Query: 670 AAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTXXXXXXXXX 849
AAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQST
Sbjct: 61 AAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTEGHHEVELE 120
Query: 850 XXRPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTXXXXXXXXXXXXXX 1029
RPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRT
Sbjct: 121 EERPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTGAGSPSRGQRPSSP 180
Query: 1030 XXXXHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNY 1209
HHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNY
Sbjct: 181 SRTSHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNY 240
Query: 1210 SFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRL 1389
SFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPST ERDRA L KKR
Sbjct: 241 SFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTXERDRAXLXKKRX 300
Query: 1390 SYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFR 1569
YPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFR
Sbjct: 301 XYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFR 360
Query: 1570 NWLR 1581
NWLR
Sbjct: 361 NWLR 364
>ref|NP_567191.1| hypothetical protein; protein id: At4g00820.1 [Arabidopsis
thaliana]|gi|7485283|pir||T01564 hypothetical protein
A_TM018A10.13 - Arabidopsis
thaliana|gi|2252860|gb|AAB62858.1| A_TM018A10.13 gene
product [Arabidopsis thaliana]|gi|7267421|emb|CAB80891.1|
similarity to [Arabidopsis thaliana]
Length = 496
Score = 416 bits (1068), Expect = e-115
Identities = 267/550 (48%), Positives = 312/550 (56%), Gaps = 23/550 (4%)
Frame = +1
Query: 1 MGKKNGSSS-WLTAVKRAFRSPTKKDHSNDVXXXXXXXXXXXXXXXX------PATQESP 159
MGKK+GSSS WLTAVKRAFRSPTKK+H+N+ +SP
Sbjct: 1 MGKKSGSSSSWLTAVKRAFRSPTKKEHNNNAHGNEVDEDEDKKKEKRRWLFRKSTNHDSP 60
Query: 160 VKSSGISPPAPQEDSLN----VNSKXXXXXXXXXXXXXXXXXXGKPPSAVVPIATSASKT 327
VK+SG+ AP + S +N S P +T+
Sbjct: 61 VKTSGVGKDAPAQKSTETTTIINPTVLSSVTEQRYDASTPPATVSAASETHPPSTTKELP 120
Query: 328 LAPRRIYYARENYAAVVIQTSFRGYXXXXXXXXXKGLVKLQALVRGHNVRKQAKMTLRCM 507
RR Y ARE+YAAVVIQT FRGY G ++++ R V ++ + +C
Sbjct: 121 NLTRRTYTAREDYAAVVIQTGFRGYLVLDLTLNYIGKKSIKSIERASEVTSTSERS-QC- 178
Query: 508 QALVRVQSRVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWD 687
+ A D V+ S +GSS AEDWD
Sbjct: 179 -----------------------EEASKDDFKVYASS-------------KGSSIAEDWD 202
Query: 688 DRPHTIDAVKVMLQRRRDTALRHDKTN-LSQAFSQKMWRTVGNQSTXXXXXXXXXXXRPK 864
DRPHTI+ VK MLQ+RRD ALR + N +SQAFS ++ RT G+ ST RPK
Sbjct: 203 DRPHTIEEVKAMLQQRRDNALRRESNNSISQAFSHQVRRTRGSYSTGDEYEEE----RPK 258
Query: 865 WLDRWMATRPWDKRASSRASVDQRVS--VKTVEIDTSQPY-----SRTXXXXXXXXXXXX 1023
WLDRWMA++PWDKRAS+ DQRV KTVEIDTSQPY SRT
Sbjct: 259 WLDRWMASKPWDKRAST----DQRVPPVYKTVEIDTSQPYLTRGNSRTGASPSRSQRPSS 314
Query: 1024 XXXXXXHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTPSLRS 1203
HHYQ N SATPSPAKSRPI IRSASPR QRD DR+AY+YTSNTPSLRS
Sbjct: 315 PSRTS-HHYQQHNFSSATPSPAKSRPIQIRSASPRIQRD-----DRSAYNYTSNTPSLRS 368
Query: 1204 NYSFTARSGCSI--STTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLV 1377
NYSFTARSG S+ +TT NA+L PNYMA TESAKARIRS SAPRQRPSTPE++R
Sbjct: 369 NYSFTARSGYSVCTTTTTATNAAL-PNYMAITESAKARIRSQSAPRQRPSTPEKERISSA 427
Query: 1378 KKRLSYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTES--NGVEISPA 1551
+KRLS+PVPP + D SLRSPSFKS+ GS G LEQQSNYSSCCTES G EISPA
Sbjct: 428 RKRLSFPVPPLPQQMDGQSLRSPSFKSIGGSQLGA-LEQQSNYSSCCTESLGGGGEISPA 486
Query: 1552 STSDFRNWLR 1581
STSD+R WLR
Sbjct: 487 STSDYRRWLR 496
Score = 50.8 bits (120), Expect = 7e-05
Identities = 27/50 (54%), Positives = 33/50 (66%)
Frame = +3
Query: 384 DFFQRIFGKKSIKSIKRVSEATSIGEGT*CEKAS*NDIKVYASSGSSPVS 533
D GKKSIKSI+R SE TS E + CE+AS +D KVYASS S ++
Sbjct: 149 DLTLNYIGKKSIKSIERASEVTSTSERSQCEEASKDDFKVYASSKGSSIA 198
>ref|NP_192802.1| putative protein; protein id: At4g10640.1 [Arabidopsis
thaliana]|gi|7487635|pir||T04199 hypothetical protein
T4F9.100 - Arabidopsis
thaliana|gi|4539442|emb|CAB40030.1| putative protein
[Arabidopsis thaliana]|gi|7267762|emb|CAB81165.1|
putative protein [Arabidopsis thaliana]
Length = 407
Score = 152 bits (385), Expect = 1e-35
Identities = 155/551 (28%), Positives = 237/551 (42%), Gaps = 24/551 (4%)
Frame = +1
Query: 1 MGKKNGSSSWLTAVKRAFRSPTKKD-----HSNDVXXXXXXXXXXXXXXXXPATQESPVK 165
M KKNG+S W TAVK+ SP+K H + T S ++
Sbjct: 1 MAKKNGTS-WFTAVKKILWSPSKDSDKKTHHHKETDIKRKEKKGWIFRKTKLETTNSVLQ 59
Query: 166 SSGISPPAPQEDSLNVNSKXXXXXXXXXXXXXXXXXXGKPPSAVVPIATSASK----TLA 333
+ + A +++ KPP V + ++ T
Sbjct: 60 HTVRTVEAEEKE--------------------------KPPVIVSSVEEGVTEIVKLTAT 93
Query: 334 PRRIYYARENYAAVVIQTSFRGYXXXXXXXXXKGLVKLQALVRGHNVRKQAKMTLRCMQA 513
P + R ++AA++IQT+FRGY KG+VKLQALVRG+NVR QAK+TLRC++A
Sbjct: 94 PG---FIRRHWAAIIIQTAFRGYLSRRALRALKGIVKLQALVRGNNVRNQAKLTLRCIKA 150
Query: 514 LVRVQSRVLD----QRKRL---------SHDGSRKSAFSDSHAVFESR-YLQDLSDRQSM 651
LVRVQ +VL+ QR R+ + + R S F++S+ ++++ YLQD+ R+S+
Sbjct: 151 LVRVQDQVLNHHQQQRSRVLLSPPSRNYNIEARRNSMFAESNGFWDTKTYLQDIRSRRSL 210
Query: 652 SREGSSAAEDWDDRPHTIDAVKVMLQRRRDTALRHDKTNLSQAFSQKMWRTVGNQSTXXX 831
SR+ + ++ + +++LQ++ + A++ +K +Q R+ NQS
Sbjct: 211 SRDMNRCNNEFYS-----EETELILQKKLEIAIKREKAQALALSNQIRSRSSRNQS---A 262
Query: 832 XXXXXXXXRPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDTSQPYSRTXXXXXXXX 1011
R +WLDRWMAT+ WD ++ +V R +KT+E T+
Sbjct: 263 GDDRELLERTQWLDRWMATKQWDDTITNSTNV--RDPIKTLEAVTT-------------- 306
Query: 1012 XXXXXXXXXXHHYQSRNNFSATPSPAKSRPILIRSASPRCQRDPREDRDRAAYSYTSNTP 1191
HH+Q ++ ATP ++ RS P +Y S T
Sbjct: 307 ----------HHHQ--RSYPATPPSCRAS----RSVMP---------------NYMSATE 335
Query: 1192 SLRSNYSFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAG 1371
S + AKA R+ S PR+RP T
Sbjct: 336 SAK---------------------------------AKA--RTQSTPRRRPMT------- 353
Query: 1372 LVKKRLSYPVPPPAEYEDNNSLRSPSFKS-VAGSHFGGMLEQQSNYSSCCTESNGVEISP 1548
KKRL Y + SLRSPSFKS + G H +S+YS C + +ISP
Sbjct: 354 -AKKRLC--------YAEEESLRSPSFKSCLWGDH-------ESDYSCCYGDGFAGKISP 397
Query: 1549 ASTSDFRNWLR 1581
ST++ R WL+
Sbjct: 398 CSTTELR-WLK 407
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 129
effective length of database: 256,451,607
effective search space used: 118480642434
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)