BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.7.C1
(643 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199581.1| 60S acidic ribosomal protein P1-like prote... 156 2e-37
gb|AAM62534.1| 60S acidic ribosomal protein P1-like protein... 155 5e-37
gb|AAM64427.1| acidic ribosomal protein, putative [Arabidop... 150 1e-35
ref|NP_171618.1| acidic ribosomal protein, putative; protei... 150 1e-35
ref|NP_567190.1| acidic ribosomal protein p1; protein id: A... 150 2e-35
>ref|NP_199581.1| 60S acidic ribosomal protein P1-like protein; protein id:
At5g47700.1, supported by cDNA: 14401., supported by
cDNA: gi_17979076, supported by cDNA: gi_20465332
[Arabidopsis thaliana]|gi|10177906|dbj|BAB11317.1| 60S
acidic ribosomal protein P1-like protein [Arabidopsis
thaliana]|gi|17979077|gb|AAL49806.1| putative 60S acidic
ribosomal protein P1 [Arabidopsis
thaliana]|gi|20465333|gb|AAM20070.1| putative 60S acidic
ribosomal protein P1 [Arabidopsis thaliana]
Length = 113
Score = 156 bits (395), Expect = 2e-37
Identities = 82/111 (73%), Positives = 82/111 (73%)
Frame = +2
Query: 119 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 298
MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 299 MNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKKKDEPAEESDGDLGFGL 451
MN EEKKKDEPAEESDGDLGFGL
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGL 111
>gb|AAM62534.1| 60S acidic ribosomal protein P1-like protein [Arabidopsis thaliana]
Length = 113
Score = 155 bits (391), Expect = 5e-37
Identities = 81/111 (72%), Positives = 81/111 (72%)
Frame = +2
Query: 119 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 298
MSTVGELAC YAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI
Sbjct: 1 MSTVGELACXYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 299 MNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKKKDEPAEESDGDLGFGL 451
MN EEKKKDEPAEESDGDLGFGL
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGL 111
>gb|AAM64427.1| acidic ribosomal protein, putative [Arabidopsis thaliana]
Length = 112
Score = 150 bits (380), Expect = 1e-35
Identities = 81/111 (72%), Positives = 82/111 (72%)
Frame = +2
Query: 119 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 298
MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGV+IESYWPMLFAKMAEKRNVTDLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 299 MNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKKKDEPAEESDGDLGFGL 451
MN EEKKKDEPAEESDGDLGFGL
Sbjct: 61 MN-VGAGGGGSAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGL 110
>ref|NP_171618.1| acidic ribosomal protein, putative; protein id: At1g01100.2,
supported by cDNA: 24367., supported by cDNA:
gi_15293082, supported by cDNA: gi_20258886 [Arabidopsis
thaliana]|gi|25295097|pir||E86141 protein T25K16.9
[imported] - Arabidopsis
thaliana|gi|6715644|gb|AAF26471.1|AC007323_12 T25K16.9
[Arabidopsis thaliana]|gi|15293083|gb|AAK93652.1|
putative acidic ribosomal protein [Arabidopsis
thaliana]|gi|20258887|gb|AAM14115.1| putative acidic
ribosomal protein [Arabidopsis thaliana]
Length = 112
Score = 150 bits (379), Expect = 1e-35
Identities = 81/111 (72%), Positives = 82/111 (72%)
Frame = +2
Query: 119 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 298
MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGV+IESYWPMLFAKMAEKRNVTDLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 299 MNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKKKDEPAEESDGDLGFGL 451
MN EEKKKDEPAEESDGDLGFGL
Sbjct: 61 MN-VGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGL 110
>ref|NP_567190.1| acidic ribosomal protein p1; protein id: At4g00810.1, supported by
cDNA: 26442., supported by cDNA: gi_13605596, supported
by cDNA: gi_15777870 [Arabidopsis
thaliana]|gi|13605597|gb|AAK32792.1|AF361624_1
AT4g00810/A_TM018A10_9 [Arabidopsis
thaliana]|gi|15777871|gb|AAL05896.1|
AT4g00810/A_TM018A10_9 [Arabidopsis
thaliana]|gi|21554797|gb|AAM63694.1| acidic ribosomal
protein p1 [Arabidopsis thaliana]
Length = 113
Score = 150 bits (378), Expect = 2e-35
Identities = 78/111 (70%), Positives = 81/111 (72%)
Frame = +2
Query: 119 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 298
MSTVGELACSYAVMILEDEGIAIT+DKIATLVKAAGV IESYWPMLFAKMAEKRNVTDLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 299 MNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEKKKDEPAEESDGDLGFGL 451
MN +E+KKDEPAEESDGDLGFGL
Sbjct: 61 MNVGAGGGGGGAPVSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGL 111
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 118
effective length of database: 271,181,113
effective search space used: 25762205735
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)