BLASTX 1.4.13-Paracel [2002-12-12]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.6.C1
(1594 letters)
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
1,339,046 sequences; 429,188,541 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171617.1| pyruvate dehydrogenase E1 alpha subunit; p... 794 0.0
gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana] 767 0.0
ref|NP_486748.1| pyruvate dehydrogenase E1 component, alpha... 458 e-127
gb|ZP_00072874.1| hypothetical protein [Trichodesmium eryth... 457 e-127
gb|ZP_00110666.1| hypothetical protein [Nostoc punctiforme] 456 e-127
>ref|NP_171617.1| pyruvate dehydrogenase E1 alpha subunit; protein id: At1g01090.1,
supported by cDNA: gi_15450706, supported by cDNA:
gi_17380621, supported by cDNA: gi_2454181 [Arabidopsis
thaliana]|gi|2454182|gb|AAB86803.1| pyruvate
dehydrogenase E1 alpha subunit [Arabidopsis
thaliana]|gi|15450707|gb|AAK96625.1| At1g01090/T25K16_8
[Arabidopsis thaliana]|gi|17380622|gb|AAL36074.1|
At1g01090/T25K16_8 [Arabidopsis thaliana]
Length = 428
Score = 794 bits (2051), Expect = 0.0
Identities = 397/428 (92%), Positives = 397/428 (92%)
Frame = +1
Query: 115 MATAFAPTKLTATVPLHGSHENRLLLPIRLAPPXXXXXXXXXXXXXXXXXXNATRRSPXX 294
MATAFAPTKLTATVPLHGSHENRLLLPIRLAPP NATRRSP
Sbjct: 1 MATAFAPTKLTATVPLHGSHENRLLLPIRLAPPSSFLGSTRSLSLRRLNHSNATRRSPVV 60
Query: 295 XXXXXXXXXXXTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ 474
TNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ
Sbjct: 61 SVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ 120
Query: 475 EAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFS 654
EAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFS
Sbjct: 121 EAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFS 180
Query: 655 KEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLN 834
KEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLN
Sbjct: 181 KEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLN 240
Query: 835 MAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAK 1014
MAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAK
Sbjct: 241 MAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAK 300
Query: 1015 EAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKL 1194
EAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKL
Sbjct: 301 EAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKL 360
Query: 1195 AKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRCEDPK 1374
AKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRCEDPK
Sbjct: 361 AKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRCEDPK 420
Query: 1375 FTEGTAQV 1398
FTEGTAQV
Sbjct: 421 FTEGTAQV 428
>gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 767 bits (1980), Expect = 0.0
Identities = 384/417 (92%), Positives = 385/417 (92%)
Frame = +1
Query: 115 MATAFAPTKLTATVPLHGSHENRLLLPIRLAPPXXXXXXXXXXXXXXXXXXNATRRSPXX 294
MATAFAPTKLTATVPLHGSHENRLLLPIRLAPP NATRRSP
Sbjct: 1 MATAFAPTKLTATVPLHGSHENRLLLPIRLAPPSSFLGSTRSLSLRRLNHSNATRRSPVV 60
Query: 295 XXXXXXXXXXXTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ 474
TNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ
Sbjct: 61 SVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQ 120
Query: 475 EAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFS 654
EAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFS
Sbjct: 121 EAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFS 180
Query: 655 KEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLN 834
KEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLN
Sbjct: 181 KEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLN 240
Query: 835 MAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAK 1014
MAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAK
Sbjct: 241 MAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAK 300
Query: 1015 EAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKL 1194
EAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKL
Sbjct: 301 EAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKL 360
Query: 1195 AKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRCE 1365
AKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYR +
Sbjct: 361 AKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRSQ 417
>ref|NP_486748.1| pyruvate dehydrogenase E1 component, alpha subunit [Nostoc sp. PCC
7120]|gi|25284425|pir||AE2144 pyruvate dehydrogenase E1
component, alpha chain [imported] - Nostoc sp. (strain
PCC 7120)|gi|17131801|dbj|BAB74407.1| pyruvate
dehydrogenase E1 component, alpha subunit [Nostoc sp. PCC
7120]
Length = 344
Score = 458 bits (1178), Expect = e-127
Identities = 232/332 (69%), Positives = 264/332 (78%), Gaps = 2/332 (0%)
Frame = +1
Query: 331 NNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLT 510
N + ITKEEGL LYEDM LGR FED CA+MYYRGKMFGFVHLYNGQEAVSTG I+ +
Sbjct: 11 NTANAKITKEEGLLLYEDMTLGRFFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGVIQAMR 70
Query: 511 KS-DSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAF 687
D V STYRDHVHALS GV AR VM+ELFGK TGC +G+GGSMHMFS EH +LGG+AF
Sbjct: 71 PGEDFVSSTYRDHVHALSAGVPAREVMAELFGKATGCSKGRGGSMHMFSAEHGLLGGYAF 130
Query: 688 IGEGIPVATGAAFSSKYRREVLKQ-DCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPII 864
+ EGIPVA GAAF SKYRREVL + D VT FFGDG NNGQFFE LNMAAL+KLPII
Sbjct: 131 VAEGIPVAAGAAFQSKYRREVLGDPNADQVTACFFGDGAANNGQFFETLNMAALWKLPII 190
Query: 865 FVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGE 1044
FVVENN WAIGM+H RATSDPEI+KK F M GV VDGMDVL VR VA+EAV RAR GE
Sbjct: 191 FVVENNKWAIGMAHDRATSDPEIYKKASVFNMVGVEVDGMDVLAVRAVAQEAVARARAGE 250
Query: 1045 GPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIE 1224
GPTL+E TYRFRGHSLADPDE+R AEK + +RDPI L YLIE LA EAELK+IE
Sbjct: 251 GPTLIEALTYRFRGHSLADPDEMRSKAEKEFWFSRDPIKKLAAYLIEQNLADEAELKAIE 310
Query: 1225 KKIDELVEEAVEFADASPQPGRSQLLENVFAD 1320
+KI +++++AV+FA++SP+P S+L VFA+
Sbjct: 311 RKIQDVIDDAVKFAESSPEPDPSELYRFVFAE 342
>gb|ZP_00072874.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 346
Score = 457 bits (1175), Expect = e-127
Identities = 227/332 (68%), Positives = 261/332 (78%), Gaps = 2/332 (0%)
Frame = +1
Query: 331 NNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLT 510
+ S+ ITKE+ L LYEDM+LGR FED CA+MYYRGKMFGFVHLYNGQEAVS+G IK +
Sbjct: 14 DTNSVKITKEKALILYEDMVLGRLFEDKCAEMYYRGKMFGFVHLYNGQEAVSSGVIKAMR 73
Query: 511 KS-DSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAF 687
+ D V STYRDHVHALS GV AR VM+ELFGK TGC +G+GGSMHMFS HN+LGG+AF
Sbjct: 74 QDEDFVSSTYRDHVHALSAGVPAREVMAELFGKATGCSKGRGGSMHMFSATHNLLGGYAF 133
Query: 688 IGEGIPVATGAAFSSKYRREVL-KQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPII 864
+ EGIPVATGAAF SKYRRE + Q D VT FFGDG CNNGQFFECLNMAAL+KLPII
Sbjct: 134 VAEGIPVATGAAFQSKYRRETMGNQAADQVTACFFGDGACNNGQFFECLNMAALWKLPII 193
Query: 865 FVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGE 1044
+VVENN WAIGM+H RATS+PEI+KK AFGM GV VDGMD+L V A+EAV RAR GE
Sbjct: 194 YVVENNKWAIGMAHERATSEPEIYKKAHAFGMVGVEVDGMDILAVHSAAQEAVARARAGE 253
Query: 1045 GPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIE 1224
GPTL+E TYRFRGHSLADPDELRD EK + +RDPI YL EN L AEL +I+
Sbjct: 254 GPTLIEALTYRFRGHSLADPDELRDQEEKQYWFSRDPIKKFTTYLTENNLVDVAELVAID 313
Query: 1225 KKIDELVEEAVEFADASPQPGRSQLLENVFAD 1320
KKI+ L+ EAV+FA SP+PG +L +FA+
Sbjct: 314 KKIENLITEAVDFATNSPEPGSDELYRYIFAE 345
>gb|ZP_00110666.1| hypothetical protein [Nostoc punctiforme]
Length = 344
Score = 456 bits (1172), Expect = e-127
Identities = 228/332 (68%), Positives = 264/332 (78%), Gaps = 2/332 (0%)
Frame = +1
Query: 331 NNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLT 510
N + ITKEEGL LYEDM+LGR FED CA+MYYRGKMFGFVHLYNGQEAV TG ++ +
Sbjct: 11 NPATTQITKEEGLWLYEDMVLGRLFEDKCAEMYYRGKMFGFVHLYNGQEAVCTGVVQSMR 70
Query: 511 KS-DSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAF 687
D V STYRDHVHALS GV AR VM+ELFGK TGC +G+GGSMHMFS EH +LGG+AF
Sbjct: 71 PGEDYVCSTYRDHVHALSAGVPAREVMAELFGKATGCSKGRGGSMHMFSAEHRLLGGYAF 130
Query: 688 IGEGIPVATGAAFSSKYRREVL-KQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPII 864
+ EGIPVA GAAF SKYRREVL ++ D VT FFGDG NNGQFFE LNMAAL+KLPI+
Sbjct: 131 VAEGIPVAAGAAFQSKYRREVLGDKNADQVTACFFGDGAANNGQFFETLNMAALWKLPIL 190
Query: 865 FVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGE 1044
FVVENN WAIGMSH RATS PEI+KK AF M GV VDGMDVL VR VA+EAV RAR GE
Sbjct: 191 FVVENNKWAIGMSHERATSQPEIYKKASAFNMVGVEVDGMDVLAVRAVAQEAVARARAGE 250
Query: 1045 GPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIAALKKYLIENKLAKEAELKSIE 1224
GPTL+E TYRFRGHSLADPDE+R AEK + ARDPI L YL+E LA E E+K+I+
Sbjct: 251 GPTLIEALTYRFRGHSLADPDEMRSKAEKEFWFARDPIKKLAAYLLEQNLANEGEIKAID 310
Query: 1225 KKIDELVEEAVEFADASPQPGRSQLLENVFAD 1320
+KI ++++EAV+FA++SP+P S+L VFA+
Sbjct: 311 RKIQDVIDEAVKFAESSPEPDPSELYRFVFAE 342
Database: BlastDB/NCBI/blast/db/2003_02_17_02_00_1/nr
Posted date: Feb 17, 2003 10:02 AM
Number of letters in database: 429,188,541
Number of sequences in database: 1,339,046
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 429,188,541
effective HSP length: 128
effective length of database: 257,790,653
effective search space used: 103631842506
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)